Wall clock time and date at job start Tue Mar 31 2020 21:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47154 * 240.00200 * 3 2 1 5 5 H 1.48498 * 109.47204 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47025 * 120.00024 * 3 2 1 7 7 C 1.38802 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00042 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64167 * 0.02562 * 9 7 2 11 11 C 1.54912 * 104.82495 * 155.83803 * 10 9 7 12 12 C 1.55153 * 101.58753 * 37.00943 * 11 10 9 13 13 H 1.08999 * 110.72233 * 83.03285 * 12 11 10 14 14 C 1.53000 * 110.72411 * 206.13471 * 12 11 10 15 15 H 1.08998 * 109.69873 * 305.63665 * 14 12 11 16 16 C 1.53626 * 109.66225 * 66.22554 * 14 12 11 17 17 C 1.53041 * 109.23614 * 174.54825 * 16 14 12 18 18 C 1.53036 * 109.54205 * 298.51017 * 17 16 14 19 19 C 1.53192 * 109.30895 * 61.37003 * 18 17 16 20 20 N 1.46927 * 109.58502 * 185.27886 * 14 12 11 21 21 C 1.34773 * 120.63287 * 6.62603 * 20 14 12 22 22 O 1.21282 * 120.00006 * 355.36401 * 21 20 14 23 23 C 1.50699 * 119.99943 * 175.36168 * 21 20 14 24 24 F 1.39898 * 110.54100 * 312.61498 * 23 21 20 25 25 C 1.54888 * 110.48546 * 75.22662 * 23 21 20 26 26 C 1.54893 * 102.75014 * 156.61979 * 25 23 21 27 27 C 1.54270 * 104.19312 * 322.05841 * 26 25 23 28 28 C 1.53869 * 106.60084 * 23.60985 * 27 26 25 29 29 C 1.47318 * 125.61598 * 180.16466 * 9 7 2 30 30 H 0.96999 * 119.99623 * 359.97438 * 1 2 3 31 31 H 1.08990 * 110.36773 * 37.00256 * 10 9 7 32 32 H 1.08998 * 110.36521 * 274.67282 * 10 9 7 33 33 H 1.08996 * 111.00663 * 278.93045 * 11 10 9 34 34 H 1.09001 * 111.03358 * 155.10015 * 11 10 9 35 35 H 1.09003 * 109.63346 * 54.56267 * 16 14 12 36 36 H 1.08996 * 109.46017 * 294.43479 * 16 14 12 37 37 H 1.09003 * 109.45529 * 178.48618 * 17 16 14 38 38 H 1.09004 * 109.45935 * 58.53935 * 17 16 14 39 39 H 1.08998 * 109.49940 * 301.41672 * 18 17 16 40 40 H 1.09001 * 109.49800 * 181.31243 * 18 17 16 41 41 H 1.08999 * 109.58383 * 185.57849 * 19 18 17 42 42 H 1.08998 * 109.70895 * 65.22447 * 19 18 17 43 43 H 1.09002 * 110.75908 * 274.93477 * 25 23 21 44 44 H 1.08998 * 110.75635 * 38.30929 * 25 23 21 45 45 H 1.09001 * 110.48572 * 203.37963 * 26 25 23 46 46 H 1.09005 * 110.59908 * 80.79034 * 26 25 23 47 47 H 1.09000 * 110.03407 * 264.32414 * 27 26 25 48 48 H 1.09005 * 110.07156 * 142.91706 * 27 26 25 49 49 H 1.09003 * 110.03286 * 240.71648 * 28 27 26 50 50 H 1.08999 * 110.07514 * 119.30558 * 28 27 26 51 51 H 1.09005 * 110.06205 * 61.75192 * 29 9 7 52 52 H 1.09000 * 109.85276 * 300.49076 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1415 -2.5331 -0.0005 11 6 -0.4015 -3.9318 -0.6135 12 6 0.7785 -4.7524 -0.0292 13 1 0.5448 -5.1014 0.9766 14 6 1.1233 -5.9306 -0.9424 15 1 0.2307 -6.5301 -1.1215 16 6 1.6726 -5.4061 -2.2778 17 6 2.1406 -6.5882 -3.1297 18 6 3.2662 -7.3284 -2.4037 19 6 2.7389 -7.8712 -1.0717 20 7 2.1551 -6.7611 -0.3065 21 6 2.5544 -6.5128 0.9565 22 8 2.1235 -5.5469 1.5499 23 6 3.5364 -7.4354 1.6314 24 9 3.1559 -8.7702 1.4563 25 6 4.9654 -7.2025 1.0811 26 6 5.8635 -7.7227 2.2309 27 6 5.1291 -7.2813 3.5138 28 6 3.6496 -7.0987 3.1327 29 6 1.9339 -3.7298 0.0024 30 1 -0.4849 0.8401 0.0004 31 1 -0.5992 -1.7584 -0.6155 32 1 -0.5271 -2.4876 1.0179 33 1 -0.3520 -3.8968 -1.7018 34 1 -1.3589 -4.3329 -0.2808 35 1 2.5127 -4.7372 -2.0908 36 1 0.8875 -4.8651 -2.8060 37 1 2.5063 -6.2221 -4.0890 38 1 1.3058 -7.2692 -3.2955 39 1 4.0913 -6.6415 -2.2156 40 1 3.6148 -8.1562 -3.0213 41 1 3.5596 -8.3127 -0.5065 42 1 1.9761 -8.6270 -1.2589 43 1 5.1283 -7.7810 0.1718 44 1 5.1424 -6.1419 0.9024 45 1 6.8514 -7.2650 2.1802 46 1 5.9449 -8.8090 2.1924 47 1 5.5409 -6.3387 3.8742 48 1 5.2248 -8.0484 4.2823 49 1 3.3434 -6.0674 3.3081 50 1 3.0266 -7.7772 3.7155 51 1 2.5278 -3.8692 0.9058 52 1 2.5624 -3.8532 -0.8796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039215707.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:09 Heat of formation + Delta-G solvation = -48.702406 kcal Electronic energy + Delta-G solvation = -32730.773146 eV Core-core repulsion = 28645.383261 eV Total energy + Delta-G solvation = -4085.389885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.01445 -41.95185 -39.26876 -38.25278 -37.69712 -34.91529 -33.87765 -32.61922 -30.80265 -29.95544 -29.84920 -28.60430 -26.90109 -25.70043 -24.54358 -23.05131 -22.14693 -21.78043 -21.57600 -20.76089 -19.85757 -18.91464 -18.20148 -17.52769 -17.03430 -16.82925 -16.60933 -16.33776 -16.02484 -15.85375 -15.65529 -15.26205 -15.00997 -14.78240 -14.63026 -14.49287 -14.27839 -13.97986 -13.70939 -13.57480 -13.41550 -13.23833 -12.91203 -12.83939 -12.69186 -12.59742 -12.35192 -12.32069 -12.21515 -12.04528 -11.97217 -11.87667 -11.85002 -11.61391 -11.51149 -11.39298 -11.34875 -11.28636 -11.12644 -10.71776 -9.99853 -9.47561 -8.77045 -7.75177 -5.18309 1.40715 1.42393 1.46930 1.53254 1.83461 2.49895 3.03777 3.20491 3.31899 3.36155 3.59768 3.71226 3.80488 3.87053 3.96703 4.04038 4.14252 4.17648 4.25272 4.29612 4.30977 4.34399 4.37789 4.39610 4.56528 4.61875 4.66220 4.70590 4.76776 4.81780 4.87106 4.94833 4.97124 5.03473 5.06766 5.08655 5.15620 5.17549 5.22362 5.22826 5.27780 5.32442 5.37578 5.42946 5.51472 5.57991 5.65297 5.75609 5.84284 6.31138 6.37840 7.09712 7.14574 7.82410 8.49288 9.26660 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.004089 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.210402 B = 6846.753238 C = 7938.967185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.626 5.626 10 C 0.160 3.840 11 C -0.133 4.133 12 C -0.083 4.083 13 H 0.087 0.913 14 C 0.164 3.836 15 H 0.091 0.909 16 C -0.135 4.135 17 C -0.113 4.113 18 C -0.130 4.130 19 C 0.095 3.905 20 N -0.595 5.595 21 C 0.481 3.519 22 O -0.531 6.531 23 C 0.104 3.896 24 F -0.188 7.188 25 C -0.137 4.137 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.140 4.140 29 C 0.149 3.851 30 H 0.246 0.754 31 H 0.073 0.927 32 H -0.030 1.030 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.081 0.919 51 H 0.022 0.978 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.962 -24.036 -2.880 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.090 0.910 9 N -0.352 5.352 10 C 0.035 3.965 11 C -0.172 4.172 12 C -0.102 4.102 13 H 0.105 0.895 14 C 0.061 3.939 15 H 0.109 0.891 16 C -0.173 4.173 17 C -0.150 4.150 18 C -0.168 4.168 19 C -0.026 4.026 20 N -0.328 5.328 21 C 0.268 3.732 22 O -0.409 6.409 23 C 0.082 3.918 24 F -0.169 7.169 25 C -0.174 4.174 26 C -0.154 4.154 27 C -0.159 4.159 28 C -0.179 4.179 29 C 0.025 3.975 30 H 0.056 0.944 31 H 0.090 0.910 32 H -0.012 1.012 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.100 0.900 51 H 0.040 0.960 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.701 -23.373 -2.582 25.437 hybrid contribution -0.140 1.469 0.415 1.533 sum 9.560 -21.904 -2.168 23.997 Atomic orbital electron populations 1.70074 1.06227 1.24904 1.58898 1.25634 0.96660 1.00904 1.02965 0.85120 0.77151 0.78737 0.78140 1.19973 1.21587 1.20818 1.19386 0.90701 0.84194 1.42333 0.90972 1.44945 1.02610 1.01191 1.86438 1.21612 0.84401 0.94992 0.95525 1.23050 0.97970 0.96098 1.00110 1.22545 0.94807 0.93686 0.99184 0.89468 1.21297 0.90038 0.90434 0.92088 0.89083 1.22182 1.01333 0.98823 0.94980 1.21512 0.99045 0.96276 0.98209 1.21939 0.98007 1.01203 0.95682 1.22262 0.99610 0.87711 0.93008 1.48165 1.39615 1.32226 1.12758 1.21191 0.82968 0.86282 0.82773 1.90799 1.55073 1.29056 1.65998 1.21920 0.95314 0.76395 0.98144 1.92847 1.92632 1.35051 1.96350 1.23189 0.90210 1.03218 1.00827 1.22393 0.98789 1.02118 0.92051 1.22153 0.92289 1.02520 0.98909 1.22664 0.99820 1.03669 0.91711 1.21901 0.94944 0.83757 0.96878 0.94431 0.90954 1.01197 0.91166 0.90690 0.92749 0.91242 0.90861 0.90324 0.92425 0.87623 0.88084 0.89631 0.87563 0.90531 0.89271 0.89451 0.91304 0.89590 0.90701 0.90009 0.96034 0.95868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 10.09 21.65 0.22 -60.05 16 2 C -0.07 -4.22 5.49 84.86 0.47 -3.75 16 3 Si 0.98 48.31 29.55 68.60 2.03 50.33 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 7 C -0.24 -14.51 10.28 84.03 0.86 -13.64 16 8 H 0.07 4.28 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -36.01 3.40 -691.22 -2.35 -38.37 16 10 C 0.16 8.83 5.89 86.86 0.51 9.35 16 11 C -0.13 -5.54 6.44 31.99 0.21 -5.34 16 12 C -0.08 -3.30 2.06 -9.60 -0.02 -3.32 16 13 H 0.09 3.85 5.76 -19.28 -0.11 3.74 16 14 C 0.16 4.78 2.76 45.12 0.12 4.91 16 15 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.14 -3.67 4.80 30.82 0.15 -3.52 16 17 C -0.11 -2.02 5.88 30.62 0.18 -1.84 16 18 C -0.13 -1.95 6.08 30.67 0.19 -1.76 16 19 C 0.10 1.63 5.62 86.36 0.49 2.11 16 20 N -0.60 -15.39 2.96 -794.22 -2.35 -17.73 16 21 C 0.48 14.52 6.46 87.66 0.57 15.08 16 22 O -0.53 -20.97 8.49 -3.03 -0.03 -20.99 16 23 C 0.10 2.39 0.91 -10.46 -0.01 2.38 16 24 F -0.19 -4.04 14.83 44.97 0.67 -3.37 16 25 C -0.14 -2.44 5.62 31.89 0.18 -2.27 16 26 C -0.12 -1.62 6.83 31.67 0.22 -1.40 16 27 C -0.12 -2.06 6.80 31.32 0.21 -1.85 16 28 C -0.14 -3.28 6.06 31.32 0.19 -3.09 16 29 C 0.15 7.13 5.73 86.67 0.50 7.62 16 30 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 31 H 0.07 4.42 5.87 -2.39 -0.01 4.40 16 32 H -0.03 -1.82 8.14 -2.39 -0.02 -1.84 16 33 H 0.07 2.73 6.39 -2.39 -0.02 2.71 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.05 1.81 5.48 -2.39 -0.01 1.79 16 36 H 0.07 1.99 6.67 -2.39 -0.02 1.97 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.53 3.58 -2.39 -0.01 1.52 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.11 1.43 6.54 -2.39 -0.02 1.42 16 44 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.07 2.22 6.75 -2.39 -0.02 2.20 16 50 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 51 H 0.02 1.15 5.79 -2.38 -0.01 1.13 16 52 H 0.02 1.10 5.01 -2.39 -0.01 1.09 16 Total: -1.00 -75.96 372.20 4.01 -71.95 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.82 Total: 18.56 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 5.00 Total: -0.33 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -4.48 Total: -116.15 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.03 Total: -20.99 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.67 Total: -3.37 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.33 kcal Total: -75.96 4.01 -71.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039215707.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.245 kcal (2) G-P(sol) polarization free energy of solvation -75.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds