Wall clock time and date at job start Tue Mar 31 2020 21:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99718 * 2 1 4 4 H 1.48501 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47081 * 299.99753 * 3 2 1 6 6 H 1.48497 * 109.47558 * 59.99906 * 3 2 1 7 7 C 1.38810 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00047 * 178.03942 * 7 2 1 9 9 N 1.36939 * 119.99935 * 358.04691 * 7 2 1 10 10 C 1.48155 * 127.84834 * 17.53169 * 9 7 2 11 11 C 1.54403 * 104.59459 * 140.34632 * 10 9 7 12 12 C 1.54253 * 104.93695 * 23.95542 * 11 10 9 13 13 C 1.48158 * 127.85053 * 197.55908 * 9 7 2 14 14 C 1.47097 * 112.33823 * 122.27893 * 12 11 10 15 15 C 1.52617 * 114.25786 * 183.77905 * 14 12 11 16 16 C 1.50881 * 109.37482 * 275.28537 * 15 14 12 17 17 C 1.54314 * 110.31737 * 91.74304 * 16 15 14 18 18 N 1.47565 * 111.98329 * 319.65107 * 17 16 15 19 19 C 1.34776 * 118.63863 * 137.73139 * 18 17 16 20 20 O 1.21277 * 120.00233 * 173.74886 * 19 18 17 21 21 C 1.50697 * 119.99737 * 354.02760 * 19 18 17 22 22 C 1.53005 * 112.84790 * 291.60324 * 21 19 18 23 23 F 1.39899 * 109.47382 * 298.44265 * 22 21 19 24 24 C 1.53781 * 113.61326 * 160.40871 * 21 19 18 25 25 C 1.53952 * 87.02103 * 220.04399 * 24 21 19 26 26 C 1.53783 * 87.11216 * 25.36292 * 25 24 21 27 27 C 1.44587 * 122.72286 * 317.45955 * 18 17 16 28 28 H 0.96996 * 120.00416 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.40969 * 21.57321 * 10 9 7 30 30 H 1.08994 * 110.41329 * 259.12824 * 10 9 7 31 31 H 1.08993 * 110.35300 * 265.08555 * 11 10 9 32 32 H 1.09007 * 110.34589 * 142.81027 * 11 10 9 33 33 H 1.08998 * 110.41212 * 100.83525 * 13 9 7 34 34 H 1.08997 * 110.40943 * 338.39626 * 13 9 7 35 35 H 1.09002 * 108.52351 * 305.01162 * 14 12 11 36 36 H 1.08995 * 108.52660 * 62.69188 * 14 12 11 37 37 H 1.08995 * 109.49306 * 35.25846 * 15 14 12 38 38 H 1.08997 * 109.48775 * 155.30003 * 15 14 12 39 39 H 1.09000 * 109.35029 * 212.04808 * 16 15 14 40 40 H 1.08995 * 109.35208 * 331.62115 * 16 15 14 41 41 H 1.08999 * 109.13801 * 198.95241 * 17 16 15 42 42 H 1.08995 * 108.95038 * 80.23168 * 17 16 15 43 43 H 1.08999 * 109.47184 * 58.45192 * 22 21 19 44 44 H 1.09004 * 109.46906 * 178.44852 * 22 21 19 45 45 H 1.08996 * 113.61744 * 334.56755 * 24 21 19 46 46 H 1.09006 * 113.61712 * 105.47035 * 24 21 19 47 47 H 1.09000 * 113.54131 * 270.81502 * 25 24 21 48 48 H 1.09000 * 113.74218 * 139.94038 * 25 24 21 49 49 H 1.08995 * 113.61496 * 220.08886 * 26 25 24 50 50 H 1.08998 * 113.69015 * 89.19235 * 26 25 24 51 51 H 1.08999 * 109.47241 * 210.85128 * 27 18 17 52 52 H 1.08998 * 109.47411 * 330.85116 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0899 -1.2023 -0.0315 9 7 1.3262 -2.3877 0.0415 10 6 -0.1041 -2.6230 -0.2648 11 6 -0.1226 -3.9637 -1.0304 12 6 1.1642 -4.6912 -0.5894 13 6 1.8482 -3.7264 0.4026 14 6 0.8859 -6.0048 0.0112 15 6 2.1212 -6.7240 0.5461 16 6 2.7888 -7.4761 -0.5787 17 6 3.8633 -6.5946 -1.2492 18 7 3.4178 -5.1953 -1.3946 19 6 4.2920 -4.2071 -1.1191 20 8 3.9911 -3.0528 -1.3380 21 6 5.6457 -4.5371 -0.5450 22 6 5.5692 -5.0762 0.8848 23 9 5.0090 -4.1041 1.7205 24 6 6.6816 -3.4150 -0.7258 25 6 7.7073 -4.5211 -1.0334 26 6 6.5198 -5.3905 -1.4792 27 6 2.0842 -4.8404 -1.8260 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4954 -1.8218 -0.8918 30 1 -0.6818 -2.7030 0.6560 31 1 -0.1082 -3.7864 -2.1057 32 1 -1.0012 -4.5464 -0.7532 33 1 1.5743 -3.9775 1.4273 34 1 2.9307 -3.7584 0.2790 35 1 0.1821 -5.8681 0.8323 36 1 0.4183 -6.6382 -0.7425 37 1 2.8172 -5.9936 0.9585 38 1 1.8246 -7.4246 1.3266 39 1 3.2565 -8.3775 -0.1828 40 1 2.0405 -7.7558 -1.3203 41 1 4.0914 -6.9975 -2.2359 42 1 4.7683 -6.6165 -0.6422 43 1 4.9488 -5.9722 0.9026 44 1 6.5720 -5.3217 1.2346 45 1 6.4752 -2.7627 -1.5742 46 1 6.8935 -2.8645 0.1909 47 1 8.2176 -4.9001 -0.1479 48 1 8.3932 -4.2708 -1.8426 49 1 6.6011 -6.4325 -1.1700 50 1 6.2680 -5.2804 -2.5340 51 1 2.1174 -3.8965 -2.3701 52 1 1.6931 -5.6218 -2.4775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045968519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:11 Heat of formation + Delta-G solvation = -42.056025 kcal Electronic energy + Delta-G solvation = -33877.354941 eV Core-core repulsion = 29792.253264 eV Total energy + Delta-G solvation = -4085.101677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.66285 -42.24824 -40.28536 -38.34493 -37.51979 -35.02518 -34.19341 -32.34814 -30.47282 -30.04888 -27.84259 -27.60466 -26.89001 -26.23276 -25.21188 -24.35232 -22.44574 -21.76065 -20.72749 -19.78055 -19.34081 -18.90587 -18.22222 -17.26551 -17.09482 -16.87671 -16.60347 -16.51810 -16.29039 -15.84345 -15.44850 -15.37106 -15.04418 -14.82922 -14.66079 -14.29209 -14.06907 -13.77031 -13.43681 -13.39569 -13.20349 -13.09112 -12.94645 -12.89978 -12.81441 -12.67759 -12.52996 -12.28426 -12.04811 -11.99100 -11.96764 -11.74365 -11.63330 -11.61186 -11.36022 -11.23905 -11.12631 -11.07518 -11.03958 -10.66854 -10.33795 -9.38188 -8.73292 -7.81507 -5.16202 1.35287 1.37287 1.49263 1.76595 2.18808 2.50057 3.22429 3.28575 3.34127 3.59970 3.62329 3.72021 3.84988 3.86288 3.90072 3.98537 4.08137 4.09458 4.19370 4.23261 4.39174 4.43004 4.49553 4.56054 4.63444 4.65508 4.67520 4.79446 4.81102 4.81427 4.85160 4.92463 5.00531 5.04429 5.09672 5.10614 5.15197 5.18751 5.24032 5.30310 5.35030 5.41098 5.43374 5.50171 5.57068 5.59274 5.69966 5.77457 5.89472 6.33067 6.55125 7.14110 7.45972 7.80814 8.58952 9.30179 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010962 B = 0.006091 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.722469 B = 4595.884816 C = 6275.005039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.078 4.078 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.186 4.186 8 H 0.062 0.938 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.120 4.120 12 C -0.076 4.076 13 C 0.136 3.864 14 C -0.095 4.095 15 C -0.116 4.116 16 C -0.125 4.125 17 C 0.091 3.909 18 N -0.601 5.601 19 C 0.505 3.495 20 O -0.554 6.554 21 C -0.150 4.150 22 C 0.076 3.924 23 F -0.236 7.236 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.100 4.100 27 C 0.142 3.858 28 H 0.243 0.757 29 H 0.056 0.944 30 H -0.013 1.013 31 H 0.056 0.944 32 H 0.079 0.921 33 H -0.015 1.015 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.121 0.879 50 H 0.085 0.915 51 H 0.038 0.962 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.772 -25.193 -3.154 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.316 4.316 8 H 0.080 0.920 9 N -0.328 5.328 10 C 0.025 3.975 11 C -0.159 4.159 12 C -0.079 4.079 13 C 0.011 3.989 14 C -0.132 4.132 15 C -0.154 4.154 16 C -0.162 4.162 17 C -0.030 4.030 18 N -0.333 5.333 19 C 0.294 3.706 20 O -0.431 6.431 21 C -0.153 4.153 22 C 0.022 3.978 23 F -0.218 7.218 24 C -0.167 4.167 25 C -0.159 4.159 26 C -0.137 4.137 27 C 0.019 3.981 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.005 0.995 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.002 0.998 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.141 0.859 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.128 0.872 48 H 0.102 0.898 49 H 0.139 0.861 50 H 0.104 0.896 51 H 0.057 0.943 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.603 -24.340 -3.276 28.075 hybrid contribution -0.486 2.305 0.296 2.375 sum 13.117 -22.034 -2.980 25.816 Atomic orbital electron populations 1.70048 1.05902 1.24597 1.60083 1.25607 0.96615 1.00483 1.04227 0.85146 0.77828 0.80458 0.76923 1.20415 1.21687 1.21499 1.19210 0.90138 0.83264 1.38941 0.91986 1.45001 1.06640 1.03382 1.77757 1.21506 0.85730 0.95054 0.95162 1.22667 0.97186 0.96569 0.99494 1.21004 0.95001 0.95498 0.96369 1.22003 0.98614 0.85099 0.93194 1.20382 0.98674 0.93998 1.00175 1.21088 0.96554 0.98836 0.98917 1.21864 0.98526 0.98344 0.97502 1.22660 0.98798 0.78861 1.02670 1.47741 1.11346 1.07253 1.67007 1.20878 0.86634 0.85182 0.77945 1.90911 1.78085 1.21863 1.52251 1.22942 0.91976 1.02426 0.98002 1.22302 1.01964 0.88991 0.84587 1.92805 1.87976 1.67283 1.73693 1.22839 0.95765 0.96517 1.01530 1.22910 0.95698 0.94366 1.02953 1.22975 0.92807 0.99743 0.98190 1.21344 0.81773 1.00015 0.95012 0.94713 0.92568 0.99537 0.92479 0.90253 0.99762 0.91700 0.93795 0.89811 0.93990 0.90146 0.87292 0.90427 0.89330 0.88234 0.87801 0.85914 0.91971 0.92487 0.87250 0.89768 0.86118 0.89626 0.94345 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.58 10.60 21.65 0.23 -63.35 16 2 C -0.08 -5.07 5.48 84.86 0.47 -4.60 16 3 Si 0.97 52.83 29.55 68.60 2.03 54.86 16 4 H -0.28 -15.01 7.11 99.48 0.71 -14.30 16 5 H -0.29 -15.48 7.11 99.48 0.71 -14.77 16 6 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 7 C -0.19 -12.10 9.72 84.03 0.82 -11.28 16 8 H 0.06 4.22 6.84 -2.91 -0.02 4.20 16 9 N -0.61 -35.59 3.39 -688.12 -2.33 -37.92 16 10 C 0.15 8.34 5.97 86.54 0.52 8.86 16 11 C -0.12 -4.87 6.24 31.50 0.20 -4.68 16 12 C -0.08 -2.73 0.67 -52.50 -0.04 -2.77 16 13 C 0.14 6.52 4.49 86.52 0.39 6.91 16 14 C -0.09 -2.47 3.83 28.63 0.11 -2.36 16 15 C -0.12 -2.32 5.45 29.78 0.16 -2.16 16 16 C -0.12 -1.49 5.71 30.35 0.17 -1.32 16 17 C 0.09 1.31 4.85 86.62 0.42 1.73 16 18 N -0.60 -16.37 1.99 -817.59 -1.63 -18.00 16 19 C 0.51 17.29 4.26 87.66 0.37 17.66 16 20 O -0.55 -26.93 12.54 -3.02 -0.04 -26.97 16 21 C -0.15 -3.59 0.48 -52.40 -0.02 -3.61 16 22 C 0.08 1.58 6.36 71.98 0.46 2.04 16 23 F -0.24 -8.19 16.72 44.97 0.75 -7.44 16 24 C -0.13 -3.39 6.90 31.18 0.22 -3.18 16 25 C -0.12 -1.71 7.74 31.18 0.24 -1.47 16 26 C -0.10 -1.33 5.60 31.12 0.17 -1.15 16 27 C 0.14 4.66 4.22 87.37 0.37 5.03 16 28 H 0.24 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.06 3.50 6.25 -2.39 -0.01 3.48 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.06 2.28 7.53 -2.39 -0.02 2.26 16 32 H 0.08 2.74 7.79 -2.38 -0.02 2.72 16 33 H -0.02 -0.78 7.95 -2.39 -0.02 -0.80 16 34 H 0.06 3.10 3.23 -2.39 -0.01 3.09 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.72 7.37 -2.39 -0.02 1.70 16 37 H 0.04 1.08 5.45 -2.39 -0.01 1.06 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 0.85 7.32 -2.39 -0.02 0.84 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 1.06 2.89 -2.39 -0.01 1.05 16 43 H 0.10 1.65 4.99 -2.39 -0.01 1.64 16 44 H 0.12 1.53 7.30 -2.39 -0.02 1.51 16 45 H 0.06 2.02 7.76 -2.39 -0.02 2.00 16 46 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 47 H 0.11 0.99 7.60 -2.39 -0.02 0.97 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.12 0.61 7.20 -2.39 -0.02 0.59 16 50 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 51 H 0.04 1.67 7.02 -2.39 -0.02 1.65 16 52 H 0.10 2.44 8.08 -2.39 -0.02 2.42 16 Total: -1.00 -91.42 370.03 4.95 -86.46 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.92 Total: 8.71 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.02 Total: 3.65 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -3.73 Total: -119.28 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.04 Total: -26.97 kcal Atomic # 9 Polarization: -8.19 SS G_CDS: 0.75 Total: -7.44 kcal Atomic # 14 Polarization: 52.83 SS G_CDS: 2.03 Total: 54.86 kcal Total: -91.42 4.95 -86.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045968519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.407 kcal (2) G-P(sol) polarization free energy of solvation -91.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds