Wall clock time and date at job start Tue Mar 31 2020 21:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99988 * 2 1 4 4 H 1.48503 * 109.47149 * 240.00031 * 3 2 1 5 5 H 1.48504 * 109.47017 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47147 * 119.99891 * 3 2 1 7 7 C 1.38808 * 120.00379 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00542 * 198.17832 * 7 2 1 9 9 N 1.36940 * 119.99685 * 18.16856 * 7 2 1 10 10 C 1.46923 * 120.63064 * 207.67747 * 9 7 2 11 11 C 1.53198 * 108.77722 * 233.58675 * 10 9 7 12 12 C 1.53037 * 109.31776 * 305.37094 * 11 10 9 13 13 C 1.52999 * 109.46141 * 181.38212 * 12 11 10 14 14 H 1.08994 * 109.49659 * 300.03317 * 13 12 11 15 15 C 1.53034 * 109.49642 * 60.13618 * 13 12 11 16 16 C 1.53043 * 109.53766 * 181.31729 * 15 13 12 17 17 C 1.53620 * 109.23897 * 298.50827 * 16 15 13 18 18 N 1.46924 * 108.54641 * 54.85704 * 17 16 15 19 19 C 1.34775 * 120.63265 * 126.36708 * 18 17 16 20 20 O 1.21281 * 119.99690 * 173.57347 * 19 18 17 21 21 C 1.50697 * 119.99986 * 353.84541 * 19 18 17 22 22 C 1.52995 * 115.54891 * 82.25113 * 21 19 18 23 23 F 1.39896 * 109.47281 * 294.03002 * 22 21 19 24 24 C 1.53009 * 117.49673 * 296.54265 * 21 19 18 25 25 C 1.53001 * 117.49936 * 227.92246 * 21 19 18 26 26 C 1.46936 * 118.73623 * 306.09480 * 18 17 16 27 27 C 1.53041 * 109.52515 * 61.36469 * 12 11 10 28 28 C 1.46929 * 120.62749 * 27.66455 * 9 7 2 29 29 H 0.97003 * 119.99832 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58473 * 113.80683 * 10 9 7 31 31 H 1.09002 * 109.58926 * 353.38019 * 10 9 7 32 32 H 1.09000 * 109.49767 * 185.41136 * 11 10 9 33 33 H 1.09004 * 109.51552 * 65.33614 * 11 10 9 34 34 H 1.09001 * 109.45855 * 301.35579 * 12 11 10 35 35 H 1.09007 * 109.45718 * 301.33493 * 15 13 12 36 36 H 1.09001 * 109.46147 * 61.29044 * 15 13 12 37 37 H 1.09001 * 109.49649 * 58.58156 * 16 15 13 38 38 H 1.09003 * 109.49534 * 178.65010 * 16 15 13 39 39 H 1.08997 * 109.74058 * 295.12008 * 17 16 15 40 40 H 1.09004 * 109.66231 * 174.54910 * 17 16 15 41 41 H 1.08996 * 109.47186 * 54.03342 * 22 21 19 42 42 H 1.09000 * 109.47213 * 174.03199 * 22 21 19 43 43 H 1.08996 * 117.50166 * 0.02562 * 24 21 19 44 44 H 1.09002 * 117.49184 * 145.01964 * 24 21 19 45 45 H 1.09000 * 117.50283 * 214.97944 * 25 21 19 46 46 H 1.09007 * 117.50032 * 359.97438 * 25 21 19 47 47 H 1.09003 * 109.58259 * 173.64282 * 26 18 17 48 48 H 1.08994 * 109.58575 * 294.06960 * 26 18 17 49 49 H 1.09002 * 109.49792 * 58.58664 * 27 12 11 50 50 H 1.09003 * 109.49548 * 178.67849 * 27 12 11 51 51 H 1.09002 * 109.58568 * 246.19501 * 28 9 7 52 52 H 1.08992 * 109.59044 * 6.62150 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0499 -1.2256 0.2912 9 7 1.3768 -2.3583 -0.3709 10 6 1.8174 -3.6559 0.1589 11 6 2.0865 -4.6023 -1.0154 12 6 0.8414 -4.6754 -1.9023 13 6 1.0945 -5.6463 -3.0573 14 1 1.9415 -5.2966 -3.6475 15 6 1.4007 -7.0373 -2.4974 16 6 1.6864 -8.0018 -3.6508 17 6 0.4415 -8.1042 -4.5451 18 7 0.0595 -6.7510 -4.9711 19 6 -0.0997 -6.4617 -6.2778 20 8 -0.5272 -5.3768 -6.6109 21 6 0.2478 -7.4886 -7.3246 22 6 -0.8288 -8.5401 -7.6003 23 9 -1.0013 -9.3396 -6.4653 24 6 1.7094 -7.9304 -7.4230 25 6 1.1074 -7.0313 -8.5048 26 6 -0.1516 -5.7206 -3.9451 27 6 0.5306 -3.2858 -2.4631 28 6 0.2435 -2.3246 -1.3053 29 1 -0.4850 0.8401 -0.0004 30 1 1.0372 -4.0750 0.7944 31 1 2.7312 -3.5230 0.7380 32 1 2.3212 -5.5964 -0.6350 33 1 2.9275 -4.2282 -1.5992 34 1 -0.0049 -5.0262 -1.3117 35 1 2.2727 -6.9825 -1.8455 36 1 0.5436 -7.3962 -1.9276 37 1 2.5279 -7.6304 -4.2356 38 1 1.9279 -8.9864 -3.2504 39 1 -0.3776 -8.5560 -3.9856 40 1 0.6680 -8.7127 -5.4207 41 1 -1.7686 -8.0434 -7.8412 42 1 -0.5215 -9.1632 -8.4402 43 1 2.4195 -7.4788 -6.7304 44 1 1.9041 -8.9707 -7.6841 45 1 0.9063 -7.4799 -9.4776 46 1 1.4213 -5.9876 -8.5243 47 1 -0.3166 -4.7558 -4.4248 48 1 -1.0180 -5.9819 -3.3377 49 1 1.3863 -2.9237 -3.0331 50 1 -0.3424 -3.3428 -3.1133 51 1 -0.6650 -2.6351 -0.7892 52 1 0.1188 -1.3133 -1.6923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047256732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:02 Heat of formation + Delta-G solvation = -69.782561 kcal Electronic energy + Delta-G solvation = -31211.385312 eV Core-core repulsion = 27125.081323 eV Total energy + Delta-G solvation = -4086.303990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -48.68172 -41.59922 -39.99058 -38.25051 -37.64034 -35.62257 -33.67262 -32.95247 -31.47609 -30.70461 -28.86781 -27.18972 -26.75121 -24.81583 -24.18126 -23.44390 -23.08274 -22.63300 -21.03375 -20.73038 -19.50876 -18.68012 -18.43203 -17.41502 -16.97482 -16.85199 -16.60507 -16.29241 -15.87311 -15.73146 -15.67138 -15.34350 -15.18886 -15.02714 -14.75751 -14.54703 -14.41646 -14.12394 -13.91656 -13.74316 -13.56401 -13.08810 -12.96871 -12.81110 -12.59720 -12.53186 -12.50685 -12.30210 -12.26993 -12.09934 -11.96496 -11.84168 -11.78929 -11.56916 -11.49461 -11.42130 -11.30852 -11.02641 -10.84514 -10.64348 -10.53726 -9.65358 -8.69406 -7.89067 -5.33668 1.42979 1.43780 1.46615 1.53036 1.88110 2.49365 2.55484 3.24646 3.27512 3.36871 3.65035 3.69031 3.71900 3.76390 3.78663 3.90953 4.08942 4.11102 4.19410 4.24091 4.32381 4.38235 4.43196 4.52549 4.56098 4.60818 4.62590 4.69181 4.74354 4.79584 4.82272 4.84600 4.87869 4.92625 4.93992 5.01438 5.07065 5.10280 5.13763 5.15783 5.29575 5.34026 5.39065 5.40638 5.47435 5.53860 5.56210 5.64465 5.75985 6.36911 6.37224 7.06397 7.12958 7.86018 8.37690 9.17016 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019687 B = 0.002659 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.926351 B =10529.102005 C =11142.586907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.054 4.054 3 Si 0.966 3.034 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.612 5.612 10 C 0.139 3.861 11 C -0.111 4.111 12 C -0.062 4.062 13 C -0.078 4.078 14 H 0.058 0.942 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.102 3.898 18 N -0.599 5.599 19 C 0.537 3.463 20 O -0.589 6.589 21 C -0.215 4.215 22 C 0.108 3.892 23 F -0.217 7.217 24 C -0.135 4.135 25 C -0.131 4.131 26 C 0.116 3.884 27 C -0.123 4.123 28 C 0.180 3.820 29 H 0.249 0.751 30 H 0.014 0.986 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.128 0.872 43 H 0.095 0.905 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.040 0.960 50 H 0.055 0.945 51 H -0.006 1.006 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -26.138 -16.171 30.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.249 4.249 3 Si 0.794 3.206 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.335 5.335 10 C 0.014 3.986 11 C -0.150 4.150 12 C -0.081 4.081 13 C -0.097 4.097 14 H 0.077 0.923 15 C -0.152 4.152 16 C -0.166 4.166 17 C -0.019 4.019 18 N -0.330 5.330 19 C 0.326 3.674 20 O -0.469 6.469 21 C -0.218 4.218 22 C 0.053 3.947 23 F -0.198 7.198 24 C -0.172 4.172 25 C -0.168 4.168 26 C -0.007 4.007 27 C -0.162 4.162 28 C 0.054 3.946 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.145 0.855 43 H 0.113 0.887 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.059 0.941 50 H 0.073 0.927 51 H 0.012 0.988 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.034 -25.473 -16.270 30.378 hybrid contribution -0.229 1.918 0.491 1.993 sum 2.805 -23.555 -15.779 28.490 Atomic orbital electron populations 1.70200 1.06764 1.25874 1.55351 1.25814 0.96025 1.01631 1.01412 0.85356 0.77622 0.79219 0.78383 1.20644 1.22006 1.19724 1.19500 0.93252 0.86437 1.40281 0.91584 1.44334 1.36877 1.02331 1.49998 1.21104 0.97080 0.85886 0.94568 1.21936 0.96834 0.99510 0.96738 1.20921 0.98293 0.93255 0.95628 1.21374 0.96610 0.96510 0.95225 0.92312 1.21648 1.02736 0.92685 0.98122 1.22014 0.97104 1.00984 0.96501 1.22291 0.97479 0.81461 1.00704 1.48192 1.67131 1.12628 1.05005 1.20192 0.76645 0.87217 0.83324 1.90690 1.47476 1.26934 1.81845 1.22010 0.97201 1.00967 1.01670 1.21535 0.97730 0.89526 0.85878 1.92743 1.96546 1.75557 1.55003 1.23304 0.90199 1.02620 1.01039 1.23124 0.98723 1.00801 0.94188 1.21634 0.98093 0.91547 0.89420 1.22069 0.99795 0.96566 0.97818 1.20515 0.87927 0.97336 0.88806 0.94182 0.96843 0.92906 0.89143 0.93271 0.91772 0.90246 0.91241 0.91666 0.88038 0.91005 0.87096 0.90477 0.85453 0.88674 0.84162 0.84298 0.89859 0.91859 0.91316 0.94112 0.92681 0.98762 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.97 11.24 21.65 0.24 -57.73 16 2 C -0.05 -3.13 4.89 84.86 0.41 -2.71 16 3 Si 0.97 46.68 29.59 68.60 2.03 48.71 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.26 -15.20 9.58 84.03 0.80 -14.40 16 8 H 0.07 3.68 7.89 -2.91 -0.02 3.65 16 9 N -0.61 -32.20 2.99 -699.09 -2.09 -34.29 16 10 C 0.14 5.85 6.52 86.37 0.56 6.42 16 11 C -0.11 -3.64 5.05 30.67 0.15 -3.49 16 12 C -0.06 -2.00 1.74 -10.77 -0.02 -2.02 16 13 C -0.08 -2.02 1.92 -10.72 -0.02 -2.04 16 14 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 15 C -0.11 -2.14 4.85 30.62 0.15 -1.99 16 16 C -0.13 -1.81 6.10 30.82 0.19 -1.62 16 17 C 0.10 1.66 5.01 86.51 0.43 2.10 16 18 N -0.60 -14.29 2.97 -818.07 -2.43 -16.71 16 19 C 0.54 14.23 6.82 87.66 0.60 14.83 16 20 O -0.59 -21.47 16.47 -3.03 -0.05 -21.52 16 21 C -0.21 -3.41 1.30 -52.93 -0.07 -3.48 16 22 C 0.11 1.23 7.36 71.98 0.53 1.76 16 23 F -0.22 -3.22 14.51 44.97 0.65 -2.57 16 24 C -0.13 -1.35 8.44 30.60 0.26 -1.09 16 25 C -0.13 -1.63 9.86 30.60 0.30 -1.32 16 26 C 0.12 3.25 5.17 86.36 0.45 3.69 16 27 C -0.12 -5.05 5.05 30.67 0.15 -4.89 16 28 C 0.18 9.28 5.31 86.36 0.46 9.74 16 29 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 32 H 0.09 2.29 6.34 -2.39 -0.02 2.28 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 1.40 6.33 -2.38 -0.02 1.38 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.11 1.47 3.83 -2.38 -0.01 1.46 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.13 0.46 8.09 -2.39 -0.02 0.44 16 43 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 47 H 0.06 2.20 5.63 -2.39 -0.01 2.18 16 48 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.05 2.16 6.49 -2.39 -0.02 2.14 16 51 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 52 H 0.05 2.68 6.06 -2.39 -0.01 2.66 16 Total: -1.00 -76.19 391.24 4.60 -71.60 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.90 Total: 13.03 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.35 Total: -0.51 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -4.28 Total: -108.73 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.65 Total: -2.57 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -76.19 4.60 -71.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047256732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.813 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds