Wall clock time and date at job start Tue Mar 31 2020 21:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47182 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46868 * 119.99586 * 3 2 1 6 6 H 1.48499 * 109.47144 * 239.99495 * 3 2 1 7 7 C 1.38817 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99543 * 171.62851 * 7 2 1 9 9 N 1.36933 * 119.99939 * 351.63272 * 7 2 1 10 10 C 1.48293 * 128.21290 * 344.80809 * 9 7 2 11 11 H 1.09005 * 112.20618 * 343.85960 * 10 9 7 12 12 C 1.54602 * 104.26381 * 221.59972 * 10 9 7 13 13 C 1.54821 * 104.65386 * 334.74523 * 12 10 9 14 14 C 1.48301 * 128.20937 * 164.49214 * 9 7 2 15 15 H 1.08997 * 112.20665 * 16.13963 * 14 9 7 16 16 C 1.53157 * 107.55682 * 252.69415 * 14 9 7 17 17 C 1.53152 * 108.90792 * 296.11136 * 16 14 9 18 18 H 1.08997 * 109.39349 * 173.84705 * 17 16 14 19 19 C 1.53004 * 109.43478 * 293.73573 * 17 16 14 20 20 N 1.46493 * 109.46874 * 180.18427 * 19 17 16 21 21 C 1.34776 * 120.00062 * 180.02562 * 20 19 17 22 22 O 1.21284 * 119.99629 * 359.97438 * 21 20 19 23 23 C 1.50701 * 120.00229 * 180.02562 * 21 20 19 24 24 H 1.09000 * 109.46827 * 299.99732 * 23 21 20 25 25 C 1.52994 * 109.47279 * 59.99613 * 23 21 20 26 26 C 1.53004 * 109.46767 * 180.02562 * 25 23 21 27 27 C 1.52997 * 109.47193 * 299.99649 * 26 25 23 28 28 C 1.53003 * 109.47130 * 60.00412 * 27 26 25 29 29 H 1.09000 * 109.46962 * 59.99843 * 28 27 26 30 30 F 1.39895 * 109.47242 * 180.02562 * 28 27 26 31 31 C 1.52998 * 109.47043 * 180.02562 * 23 21 20 32 32 C 1.53146 * 109.68881 * 53.80509 * 17 16 14 33 33 H 0.96999 * 119.99411 * 0.02562 * 1 2 3 34 34 H 1.09003 * 110.38351 * 93.68050 * 12 10 9 35 35 H 1.09001 * 110.38567 * 216.04107 * 12 10 9 36 36 H 1.08995 * 110.33754 * 241.26351 * 13 12 10 37 37 H 1.09003 * 110.52611 * 118.83168 * 13 12 10 38 38 H 1.08999 * 109.62458 * 176.24187 * 16 14 9 39 39 H 1.08992 * 109.57944 * 55.95971 * 16 14 9 40 40 H 1.09000 * 109.47249 * 300.18553 * 19 17 16 41 41 H 1.08995 * 109.47077 * 60.18284 * 19 17 16 42 42 H 0.97005 * 120.00375 * 0.02562 * 20 19 17 43 43 H 1.08999 * 109.47255 * 299.99781 * 25 23 21 44 44 H 1.08995 * 109.47205 * 60.00744 * 25 23 21 45 45 H 1.09008 * 109.46640 * 180.02562 * 26 25 23 46 46 H 1.09000 * 109.47375 * 60.00097 * 26 25 23 47 47 H 1.09000 * 109.47326 * 300.00478 * 27 26 25 48 48 H 1.08997 * 109.47326 * 180.02562 * 27 26 25 49 49 H 1.09000 * 109.46990 * 299.99509 * 31 23 21 50 50 H 1.08994 * 109.47562 * 59.99741 * 31 23 21 51 51 H 1.09001 * 109.56536 * 186.28933 * 32 17 16 52 52 H 1.08994 * 109.66835 * 65.98298 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1042 1.6962 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0816 -1.2073 -0.1356 9 7 1.3365 -2.3817 0.1736 10 6 -0.0450 -2.5841 0.6732 11 1 -0.4352 -1.6990 1.1757 12 6 0.0657 -3.8048 1.6155 13 6 1.3001 -4.5854 1.1018 14 6 1.8130 -3.7591 -0.1001 15 1 2.8963 -3.8058 -0.2109 16 6 1.0892 -4.2577 -1.3544 17 6 -0.4116 -4.3419 -1.0608 18 1 -0.9463 -4.5902 -1.9776 19 6 -0.6653 -5.4278 -0.0133 20 7 -2.1011 -5.5120 0.2648 21 6 -2.5625 -6.4052 1.1624 22 8 -1.7889 -7.1397 1.7395 23 6 -4.0396 -6.4923 1.4481 24 1 -4.3937 -5.5329 1.8255 25 6 -4.7884 -6.8417 0.1605 26 6 -6.2881 -6.9293 0.4506 27 6 -6.5423 -8.0145 1.4988 28 6 -5.7934 -7.6651 2.7865 29 1 -6.1473 -6.7056 3.1636 30 9 -6.0253 -8.6576 3.7447 31 6 -4.2932 -7.5772 2.4967 32 6 -0.9097 -2.9947 -0.5294 33 1 -0.4849 0.8401 -0.0004 34 1 0.2210 -3.4778 2.6437 35 1 -0.8297 -4.4223 1.5438 36 1 1.0087 -5.5848 0.7786 37 1 2.0649 -4.6438 1.8763 38 1 1.4641 -5.2446 -1.6254 39 1 1.2621 -3.5631 -2.1763 40 1 -0.3116 -6.3870 -0.3912 41 1 -0.1315 -5.1796 0.9040 42 1 -2.7199 -4.9248 -0.1970 43 1 -4.6077 -6.0684 -0.5861 44 1 -4.4343 -7.8010 -0.2168 45 1 -6.8216 -7.1787 -0.4668 46 1 -6.6420 -5.9698 0.8277 47 1 -6.1884 -8.9740 1.1216 48 1 -7.6107 -8.0773 1.7051 49 1 -3.9389 -8.5366 2.1197 50 1 -3.7598 -7.3278 3.4139 51 1 -1.9497 -3.0878 -0.2165 52 1 -0.8298 -2.2396 -1.3113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048525415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:09 Heat of formation + Delta-G solvation = -9.080608 kcal Electronic energy + Delta-G solvation = -31595.596136 eV Core-core repulsion = 27511.924381 eV Total energy + Delta-G solvation = -4083.671755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -48.60202 -42.72936 -40.71655 -38.20639 -36.16599 -34.60181 -32.93523 -32.36389 -31.81077 -31.61977 -30.97293 -28.22249 -25.67523 -24.80939 -24.34455 -23.46852 -22.13385 -21.68547 -21.09100 -20.84284 -20.23684 -18.79665 -18.27961 -17.60108 -16.90384 -16.66180 -16.60592 -16.41387 -16.04234 -15.82960 -15.48573 -15.13214 -14.79583 -14.54750 -14.45229 -14.34399 -14.10836 -13.75994 -13.68961 -13.40073 -13.27099 -13.11685 -12.98198 -12.91107 -12.68526 -12.60092 -12.43143 -12.32862 -12.22475 -12.04635 -11.99890 -11.64145 -11.51426 -11.40906 -11.19329 -11.18247 -11.03708 -10.93313 -10.81597 -10.54128 -10.41791 -9.42155 -8.69718 -7.80041 -5.14091 1.47877 1.49394 1.55129 1.72830 2.30895 2.52596 3.35978 3.50787 3.53012 3.60249 3.62727 3.91325 3.97269 3.99061 4.01779 4.05012 4.09043 4.26901 4.29432 4.30768 4.34564 4.41016 4.44061 4.56932 4.59710 4.61838 4.64982 4.74735 4.81042 4.94297 4.96038 5.01497 5.05922 5.08406 5.12074 5.17623 5.19364 5.19556 5.22948 5.24987 5.31998 5.40380 5.45406 5.53606 5.55906 5.57692 5.65765 5.85010 5.94888 6.32859 6.67437 7.14538 7.35424 7.80361 8.61646 9.30042 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020374 B = 0.002716 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.943650 B =10305.482035 C =10656.223013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.056 4.056 3 Si 0.967 3.033 4 H -0.295 1.295 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.607 5.607 10 C 0.176 3.824 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.150 4.150 14 C 0.139 3.861 15 H 0.065 0.935 16 C -0.116 4.116 17 C -0.076 4.076 18 H 0.070 0.930 19 C 0.012 3.988 20 N -0.711 5.711 21 C 0.510 3.490 22 O -0.585 6.585 23 C -0.098 4.098 24 H 0.121 0.879 25 C -0.112 4.112 26 C -0.109 4.109 27 C -0.144 4.144 28 C 0.088 3.912 29 H 0.103 0.897 30 F -0.231 7.231 31 C -0.122 4.122 32 C -0.098 4.098 33 H 0.245 0.755 34 H 0.038 0.962 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.180 0.820 42 H 0.407 0.593 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.057 0.943 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.755 -14.448 -0.587 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.329 5.329 10 C 0.070 3.930 11 H 0.086 0.914 12 C -0.202 4.202 13 C -0.188 4.188 14 C 0.032 3.968 15 H 0.083 0.917 16 C -0.156 4.156 17 C -0.095 4.095 18 H 0.088 0.912 19 C -0.107 4.107 20 N -0.363 5.363 21 C 0.298 3.702 22 O -0.466 6.466 23 C -0.119 4.119 24 H 0.139 0.861 25 C -0.150 4.150 26 C -0.146 4.146 27 C -0.181 4.181 28 C 0.053 3.947 29 H 0.121 0.879 30 F -0.212 7.212 31 C -0.160 4.160 32 C -0.137 4.137 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.195 0.805 42 H 0.243 0.757 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.086 0.914 48 H 0.105 0.895 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.076 0.924 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -13.201 -14.711 -0.207 19.767 hybrid contribution 0.518 1.413 -0.311 1.537 sum -12.683 -13.298 -0.519 18.384 Atomic orbital electron populations 1.70021 1.05720 1.24991 1.57189 1.25478 0.96470 1.00220 1.02853 0.85333 0.77324 0.79894 0.77788 1.22098 1.21153 1.20751 1.19224 0.90864 0.84006 1.42227 0.91182 1.45369 1.13062 1.00337 1.74117 1.21400 0.85372 0.94111 0.92132 0.91410 1.23602 0.99167 0.98736 0.98711 1.23414 0.97080 0.99770 0.98488 1.21676 0.96680 0.85158 0.93256 0.91711 1.21945 0.95129 1.00265 0.98287 1.21147 0.96477 0.94370 0.97499 0.91167 1.24814 0.82139 0.97567 1.06221 1.46219 1.09407 1.38229 1.42415 1.21015 0.91486 0.79198 0.78533 1.90678 1.59855 1.44243 1.51800 1.21270 0.90548 1.01871 0.98223 0.86065 1.21609 0.95731 1.02808 0.94804 1.21464 0.94647 0.99268 0.99235 1.22150 1.01273 1.00569 0.94148 1.21790 0.95389 0.90083 0.87485 0.87915 1.92777 1.95734 1.65643 1.67087 1.21845 0.95362 0.99527 0.99291 1.21833 0.97890 0.95067 0.98950 0.94526 0.94282 0.87078 0.86964 0.92461 0.90475 0.93940 0.93041 0.80493 0.75684 0.89538 0.91962 0.89301 0.89741 0.91377 0.89516 0.91758 0.91676 0.92401 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.54 10.59 21.65 0.23 -52.31 16 2 C -0.06 -3.06 5.43 84.86 0.46 -2.60 16 3 Si 0.97 44.86 29.56 68.60 2.03 46.89 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.23 -12.70 10.38 84.04 0.87 -11.83 16 8 H 0.07 3.73 7.84 -2.91 -0.02 3.70 16 9 N -0.61 -29.32 2.83 -638.19 -1.80 -31.12 16 10 C 0.18 7.82 3.16 45.43 0.14 7.96 16 11 H 0.07 3.59 6.28 -2.38 -0.01 3.57 16 12 C -0.16 -6.06 5.74 31.76 0.18 -5.88 16 13 C -0.15 -5.11 5.74 31.76 0.18 -4.92 16 14 C 0.14 5.40 4.29 45.25 0.19 5.59 16 15 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 16 C -0.12 -3.94 5.35 30.70 0.16 -3.78 16 17 C -0.08 -2.36 2.76 -10.69 -0.03 -2.39 16 18 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 19 C 0.01 0.35 2.68 86.38 0.23 0.58 16 20 N -0.71 -16.73 4.27 -463.07 -1.98 -18.71 16 21 C 0.51 12.70 6.91 87.66 0.61 13.31 16 22 O -0.59 -19.50 15.98 -3.04 -0.05 -19.55 16 23 C -0.10 -1.66 2.52 -11.54 -0.03 -1.69 16 24 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 25 C -0.11 -1.37 5.10 30.59 0.16 -1.21 16 26 C -0.11 -0.94 5.92 30.59 0.18 -0.76 16 27 C -0.14 -1.65 5.66 30.59 0.17 -1.48 16 28 C 0.09 1.38 3.88 30.61 0.12 1.50 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 F -0.23 -5.01 17.08 44.97 0.77 -4.24 16 31 C -0.12 -2.37 4.23 30.61 0.13 -2.24 16 32 C -0.10 -3.73 5.20 30.88 0.16 -3.57 16 33 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.11 3.67 3.94 -2.39 -0.01 3.66 16 36 H 0.11 3.38 4.83 -2.39 -0.01 3.37 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 1.44 8.00 -2.39 -0.02 1.42 16 41 H 0.18 5.54 1.12 -109.27 -0.12 5.42 16 42 H 0.41 7.87 6.73 -92.70 -0.62 7.25 16 43 H 0.09 0.88 7.56 -2.39 -0.02 0.86 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 46 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 48 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 50 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 51 H 0.06 1.90 6.71 -2.39 -0.02 1.88 16 52 H 0.03 1.57 8.03 -2.39 -0.02 1.55 16 Total: -1.00 -66.70 378.00 3.27 -63.43 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.18 Total: 29.01 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 3.90 Total: -13.40 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -3.55 Total: -102.14 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.77 Total: -4.24 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.70 3.27 -63.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048525415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.347 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds