Wall clock time and date at job start Tue Mar 31 2020 21:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99759 * 2 1 4 4 H 1.48493 * 109.47156 * 274.99790 * 3 2 1 5 5 H 1.48496 * 109.47161 * 35.00053 * 3 2 1 6 6 H 1.48506 * 109.47159 * 154.99839 * 3 2 1 7 7 C 1.38813 * 120.00559 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00701 * 214.93981 * 7 2 1 9 9 N 1.36944 * 119.99503 * 34.94109 * 7 2 1 10 10 C 1.48286 * 128.20908 * 175.01996 * 9 7 2 11 11 H 1.09000 * 112.21062 * 343.89360 * 10 9 7 12 12 C 1.54603 * 104.81657 * 221.88852 * 10 9 7 13 13 C 1.55896 * 103.99465 * 334.82002 * 12 10 9 14 14 C 1.48293 * 128.20712 * 355.04229 * 9 7 2 15 15 H 1.08995 * 112.21401 * 16.71426 * 14 9 7 16 16 C 1.53704 * 107.27733 * 253.16704 * 14 9 7 17 17 C 1.54504 * 108.28579 * 295.53674 * 16 14 9 18 18 H 1.09002 * 109.35409 * 174.09490 * 17 16 14 19 19 C 1.52996 * 109.64365 * 294.03839 * 17 16 14 20 20 N 1.46505 * 109.47454 * 181.02736 * 19 17 16 21 21 C 1.34772 * 120.00179 * 179.97438 * 20 19 17 22 22 O 1.21283 * 119.99793 * 359.97438 * 21 20 19 23 23 C 1.50699 * 119.99825 * 180.02562 * 21 20 19 24 24 C 1.53001 * 109.47175 * 299.99789 * 23 21 20 25 25 C 1.53001 * 109.47094 * 180.02562 * 24 23 21 26 26 C 1.53005 * 109.47128 * 59.99930 * 25 24 23 27 27 F 1.39908 * 109.46963 * 59.99935 * 26 25 24 28 28 C 1.53001 * 109.47190 * 300.00011 * 26 25 24 29 29 C 1.53001 * 109.47094 * 59.99968 * 28 26 25 30 30 C 1.53150 * 109.57008 * 54.15636 * 17 16 14 31 31 H 0.96994 * 120.00380 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.38606 * 93.42354 * 12 10 9 33 33 H 1.09001 * 110.38972 * 215.79052 * 12 10 9 34 34 H 1.09001 * 110.30126 * 241.10765 * 13 12 10 35 35 H 1.09002 * 110.32498 * 118.84683 * 13 12 10 36 36 H 1.09003 * 109.56055 * 55.81784 * 16 14 9 37 37 H 1.08990 * 109.57116 * 176.05371 * 16 14 9 38 38 H 1.09006 * 109.46758 * 301.02137 * 19 17 16 39 39 H 1.09002 * 109.47429 * 61.02272 * 19 17 16 40 40 H 0.96997 * 119.99662 * 359.97438 * 20 19 17 41 41 H 1.08997 * 109.47408 * 60.00116 * 23 21 20 42 42 H 1.09002 * 109.46861 * 300.00164 * 24 23 21 43 43 H 1.08993 * 109.46738 * 60.00176 * 24 23 21 44 44 H 1.08997 * 109.47314 * 300.00220 * 25 24 23 45 45 H 1.08998 * 109.46923 * 179.97438 * 25 24 23 46 46 H 1.08999 * 109.47054 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.46861 * 299.99968 * 28 26 25 48 48 H 1.09002 * 109.46828 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.46923 * 180.02562 * 29 28 26 50 50 H 1.08997 * 109.47314 * 59.99780 * 29 28 26 51 51 H 1.08995 * 109.57283 * 186.11016 * 30 17 16 52 52 H 1.09002 * 109.56965 * 65.86717 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5044 2.6199 0.8030 6 1 3.5966 1.4121 0.5918 7 6 2.0104 -1.2021 0.0005 8 1 2.9444 -1.2862 0.5362 9 7 1.5108 -2.2815 -0.6783 10 6 2.1410 -3.6080 -0.8832 11 1 3.2098 -3.5938 -0.6696 12 6 1.8451 -3.9626 -2.3586 13 6 0.5545 -3.1531 -2.6893 14 6 0.2115 -2.4006 -1.3830 15 1 -0.2438 -1.4290 -1.5750 16 6 -0.6912 -3.3032 -0.5268 17 6 -0.0622 -4.7136 -0.4804 18 1 -0.6307 -5.3402 0.2068 19 6 -0.0911 -5.3360 -1.8777 20 7 0.4837 -6.6825 -1.8247 21 6 0.5624 -7.4263 -2.9458 22 8 0.1568 -6.9811 -3.9986 23 6 1.1531 -8.8116 -2.8910 24 6 2.5997 -8.7301 -2.3994 25 6 3.1996 -10.1365 -2.3444 26 6 3.1702 -10.7586 -3.7420 27 9 3.9175 -9.9667 -4.6206 28 6 1.7237 -10.8400 -4.2337 29 6 1.1237 -9.4336 -4.2887 30 6 1.3877 -4.6131 0.0027 31 1 -0.4850 0.8400 -0.0004 32 1 2.6695 -3.6467 -2.9978 33 1 1.6706 -5.0334 -2.4641 34 1 -0.2562 -3.8287 -2.9624 35 1 0.7477 -2.4454 -3.4956 36 1 -0.7695 -2.8917 0.4795 37 1 -1.6825 -3.3599 -0.9763 38 1 -1.1216 -5.3944 -2.2281 39 1 0.4911 -4.7191 -2.5624 40 1 0.8077 -7.0387 -0.9826 41 1 0.5708 -9.4282 -2.2063 42 1 3.1819 -8.1136 -3.0842 43 1 2.6205 -8.2867 -1.4040 44 1 2.6174 -10.7534 -1.6599 45 1 4.2303 -10.0784 -1.9945 46 1 3.5981 -11.7603 -3.7029 47 1 1.1415 -11.4569 -3.5491 48 1 1.7029 -11.2828 -5.2295 49 1 0.0930 -9.4918 -4.6385 50 1 1.7059 -8.8167 -4.9731 51 1 1.8645 -5.5907 -0.0674 52 1 1.4048 -4.2719 1.0378 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048560100.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:29 Heat of formation + Delta-G solvation = -8.149122 kcal Electronic energy + Delta-G solvation = -31774.203905 eV Core-core repulsion = 27690.572542 eV Total energy + Delta-G solvation = -4083.631363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -48.51926 -42.64791 -40.62218 -37.93952 -36.19185 -34.54814 -32.93145 -32.39285 -31.86591 -31.70242 -31.16907 -28.23517 -25.62332 -24.88543 -24.28499 -23.62561 -22.13930 -21.68882 -20.95347 -20.64698 -20.26120 -18.70561 -18.23693 -17.50452 -17.25513 -16.86766 -16.60217 -16.20757 -16.18085 -15.86117 -15.49438 -14.91801 -14.64183 -14.43665 -14.38694 -14.30430 -14.06551 -13.70730 -13.52592 -13.50895 -13.21884 -13.14757 -13.06940 -12.92937 -12.79437 -12.73590 -12.64080 -12.54686 -12.33506 -12.02482 -11.97035 -11.67304 -11.38634 -11.32743 -11.20867 -11.09651 -10.97397 -10.95965 -10.78500 -10.55199 -10.29459 -9.45527 -8.89504 -7.98321 -5.02828 1.44109 1.50522 1.55884 1.75339 2.33727 2.51237 3.16927 3.57398 3.58589 3.63252 3.76390 3.92163 3.94644 3.96125 3.99762 4.06543 4.16185 4.20883 4.26527 4.31711 4.37214 4.38318 4.48322 4.52347 4.55283 4.59546 4.69502 4.77451 4.82549 4.88797 4.94900 4.99207 5.03931 5.06281 5.09304 5.11051 5.16325 5.21016 5.27244 5.30016 5.32352 5.35323 5.47822 5.50580 5.55785 5.60970 5.62591 5.76060 5.81196 6.19474 6.70080 7.04885 7.39243 7.77916 8.59008 9.16525 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.002756 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.837013 B =10155.458997 C =10552.151896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.043 4.043 3 Si 0.935 3.065 4 H -0.296 1.296 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.079 0.921 9 N -0.606 5.606 10 C 0.145 3.855 11 H 0.067 0.933 12 C -0.148 4.148 13 C -0.159 4.159 14 C 0.161 3.839 15 H 0.066 0.934 16 C -0.106 4.106 17 C -0.074 4.074 18 H 0.074 0.926 19 C 0.015 3.985 20 N -0.710 5.710 21 C 0.507 3.493 22 O -0.588 6.588 23 C -0.098 4.098 24 C -0.114 4.114 25 C -0.139 4.139 26 C 0.078 3.922 27 F -0.237 7.237 28 C -0.139 4.139 29 C -0.101 4.101 30 C -0.116 4.116 31 H 0.248 0.752 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.177 0.823 40 H 0.409 0.591 41 H 0.128 0.872 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.044 0.956 51 H 0.085 0.915 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -26.571 -3.087 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.239 4.239 3 Si 0.765 3.235 4 H -0.224 1.224 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.369 4.369 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.039 3.961 11 H 0.085 0.915 12 C -0.186 4.186 13 C -0.197 4.197 14 C 0.055 3.945 15 H 0.085 0.915 16 C -0.146 4.146 17 C -0.092 4.092 18 H 0.092 0.908 19 C -0.105 4.105 20 N -0.362 5.362 21 C 0.295 3.705 22 O -0.469 6.469 23 C -0.119 4.119 24 C -0.152 4.152 25 C -0.176 4.176 26 C 0.042 3.958 27 F -0.218 7.218 28 C -0.177 4.177 29 C -0.140 4.140 30 C -0.155 4.155 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.192 0.808 40 H 0.246 0.754 41 H 0.146 0.854 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.094 0.906 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.103 0.897 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.924 -25.984 -3.722 26.412 hybrid contribution 0.133 1.719 0.421 1.775 sum 3.057 -24.265 -3.302 24.679 Atomic orbital electron populations 1.70279 1.06389 1.25646 1.53420 1.25208 0.95630 0.99879 1.03186 0.85689 0.79263 0.81676 0.76914 1.22414 1.22740 1.19577 1.19124 1.03423 0.87888 1.26435 0.90362 1.45489 1.16973 1.10318 1.60060 1.21706 0.95911 0.85244 0.93271 0.91495 1.23568 0.96347 1.01179 0.97465 1.23681 0.98483 0.99006 0.98546 1.21594 0.86945 0.96604 0.89401 0.91549 1.22092 0.97640 0.94796 1.00033 1.21336 0.96759 0.95576 0.95570 0.90787 1.24686 1.00309 0.84325 1.01209 1.46181 1.62248 1.16445 1.11357 1.21236 0.77959 0.88232 0.83081 1.90684 1.50502 1.74166 1.31501 1.21396 0.98293 0.92012 1.00192 1.21528 0.92861 0.98486 1.02281 1.22147 1.03337 0.96102 0.96022 1.21945 0.91110 0.94493 0.88276 1.92775 1.79033 1.77754 1.72226 1.22156 0.94997 0.96833 1.03693 1.21268 1.01304 0.96217 0.95170 1.22095 0.95279 0.99278 0.98850 0.94245 0.93051 0.86594 0.87775 0.93699 0.94376 0.92999 0.93936 0.80796 0.75446 0.85412 0.93228 0.89131 0.86977 0.89916 0.87521 0.87261 0.90553 0.91766 0.93746 0.89651 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.27 11.26 21.65 0.24 -53.03 16 2 C -0.04 -2.41 5.19 84.86 0.44 -1.97 16 3 Si 0.94 45.26 29.67 68.60 2.04 47.29 16 4 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.24 -13.16 10.23 84.03 0.86 -12.30 16 8 H 0.08 4.20 8.02 -2.91 -0.02 4.18 16 9 N -0.61 -29.38 2.83 -637.22 -1.80 -31.18 16 10 C 0.15 5.50 4.28 45.43 0.19 5.69 16 11 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 12 C -0.15 -5.08 5.79 32.14 0.19 -4.90 16 13 C -0.16 -6.11 5.75 32.14 0.18 -5.93 16 14 C 0.16 7.39 3.45 45.43 0.16 7.55 16 15 H 0.07 3.62 6.10 -2.39 -0.01 3.60 16 16 C -0.11 -4.26 5.49 31.34 0.17 -4.08 16 17 C -0.07 -2.26 2.78 -10.23 -0.03 -2.29 16 18 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 19 C 0.01 0.43 2.67 86.38 0.23 0.66 16 20 N -0.71 -15.52 4.29 -463.05 -1.99 -17.50 16 21 C 0.51 12.27 6.93 87.66 0.61 12.88 16 22 O -0.59 -19.92 15.98 -3.04 -0.05 -19.97 16 23 C -0.10 -1.52 2.53 -11.54 -0.03 -1.55 16 24 C -0.11 -1.51 4.98 30.60 0.15 -1.36 16 25 C -0.14 -1.18 5.72 30.60 0.17 -1.01 16 26 C 0.08 0.87 4.12 30.60 0.13 0.99 16 27 F -0.24 -4.78 16.04 44.97 0.72 -4.06 16 28 C -0.14 -1.50 5.72 30.60 0.17 -1.32 16 29 C -0.10 -1.81 4.37 30.60 0.13 -1.68 16 30 C -0.12 -3.60 5.26 30.88 0.16 -3.44 16 31 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.12 3.50 4.07 -2.39 -0.01 3.49 16 34 H 0.10 3.66 4.85 -2.39 -0.01 3.65 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.04 1.31 7.98 -2.38 -0.02 1.29 16 39 H 0.18 5.60 1.14 -106.58 -0.12 5.48 16 40 H 0.41 6.43 6.79 -92.71 -0.63 5.80 16 41 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 0.95 7.80 -2.39 -0.02 0.93 16 43 H 0.09 0.91 7.56 -2.39 -0.02 0.89 16 44 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 49 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 50 H 0.04 1.08 7.76 -2.39 -0.02 1.06 16 51 H 0.09 1.94 6.77 -2.39 -0.02 1.92 16 52 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -70.98 377.76 3.24 -67.74 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.18 Total: 24.75 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 3.90 Total: -14.05 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -3.55 Total: -101.71 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.72 Total: -4.06 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.04 Total: 47.29 kcal Total: -70.98 3.24 -67.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048560100.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.591 kcal (2) G-P(sol) polarization free energy of solvation -70.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds