Wall clock time and date at job start Tue Mar 31 2020 21:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00146 * 2 1 4 4 H 1.48506 * 109.46919 * 274.62366 * 3 2 1 5 5 H 1.48499 * 109.47359 * 34.62263 * 3 2 1 6 6 H 1.48499 * 109.47185 * 154.62851 * 3 2 1 7 7 C 1.38811 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99654 * 170.53803 * 7 2 1 9 9 N 1.36940 * 120.00224 * 350.54324 * 7 2 1 10 10 C 1.46757 * 125.33367 * 350.00854 * 9 7 2 11 11 C 1.53978 * 106.67704 * 198.42907 * 10 9 7 12 12 H 1.08997 * 112.80068 * 209.36883 * 11 10 9 13 13 C 1.53675 * 109.29560 * 82.34521 * 11 10 9 14 14 N 1.46658 * 107.96797 * 233.06017 * 13 11 10 15 15 C 1.34776 * 125.33558 * 179.28972 * 14 13 11 16 16 O 1.21283 * 119.99590 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00396 * 179.97438 * 15 14 13 18 18 H 1.09000 * 109.47334 * 15.00568 * 17 15 14 19 19 F 1.39896 * 109.47666 * 255.00175 * 17 15 14 20 20 C 1.53000 * 109.46966 * 135.00183 * 17 15 14 21 21 C 1.52998 * 109.47075 * 185.00332 * 20 17 15 22 22 C 1.53002 * 109.47430 * 295.00078 * 21 20 17 23 23 C 1.52998 * 109.47430 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.47022 * 59.99935 * 23 22 21 25 25 C 1.53000 * 109.47175 * 299.99910 * 24 23 22 26 26 C 1.52998 * 109.47072 * 60.00121 * 25 24 23 27 27 C 1.46762 * 109.33337 * 359.29183 * 14 13 11 28 28 C 1.53977 * 106.67546 * 18.44862 * 27 14 13 29 29 H 1.08999 * 113.35004 * 209.06251 * 28 27 14 30 30 C 1.46662 * 125.33556 * 169.98372 * 9 7 2 31 31 H 0.97004 * 119.99821 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.01580 * 317.73809 * 10 9 7 33 33 H 1.09001 * 110.01724 * 79.12485 * 10 9 7 34 34 H 1.08994 * 109.76952 * 352.68666 * 13 11 10 35 35 H 1.08997 * 109.77072 * 113.43248 * 13 11 10 36 36 H 1.09001 * 109.47338 * 304.99997 * 20 17 15 37 37 H 1.09001 * 109.47015 * 65.00333 * 20 17 15 38 38 H 1.09000 * 109.47731 * 55.00055 * 21 20 17 39 39 H 1.09003 * 109.47042 * 299.99988 * 22 21 20 40 40 H 1.08997 * 109.46882 * 59.99814 * 22 21 20 41 41 H 1.08994 * 109.47302 * 299.99971 * 23 22 21 42 42 H 1.08998 * 109.47315 * 179.97438 * 23 22 21 43 43 H 1.09005 * 109.47168 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.47168 * 60.00184 * 24 23 22 45 45 H 1.08994 * 109.47109 * 299.99939 * 25 24 23 46 46 H 1.09006 * 109.47258 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47315 * 180.02562 * 26 25 24 48 48 H 1.09008 * 109.47427 * 59.99887 * 26 25 24 49 49 H 1.09004 * 110.01367 * 259.14426 * 27 14 13 50 50 H 1.08996 * 110.01633 * 137.75809 * 27 14 13 51 51 H 1.09006 * 109.76378 * 59.68353 * 30 9 7 52 52 H 1.08993 * 109.76586 * 298.94626 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4000 2.1028 -1.3956 5 1 1.5000 2.6225 0.7955 6 1 3.5933 1.4138 0.5999 7 6 2.0102 -1.2022 0.0005 8 1 3.0792 -1.2086 -0.1532 9 7 1.3395 -2.3800 0.1959 10 6 -0.0609 -2.4992 0.6185 11 6 -0.2412 -3.9326 1.1512 12 1 -1.2556 -4.3083 1.0177 13 6 0.2451 -3.9981 2.6075 14 7 1.2162 -5.0922 2.7114 15 6 1.8720 -5.4484 3.8337 16 8 1.6766 -4.8451 4.8675 17 6 2.8473 -6.5968 3.8042 18 1 3.0921 -6.8392 2.7701 19 9 2.2722 -7.7130 4.4212 20 6 4.1228 -6.2019 4.5512 21 6 5.1598 -7.3187 4.4153 22 6 4.6502 -8.5766 5.1216 23 6 5.6869 -9.6936 4.9852 24 6 7.0037 -9.2479 5.6242 25 6 7.5134 -7.9900 4.9180 26 6 6.4767 -6.8731 5.0544 27 6 1.3619 -5.7386 1.4019 28 6 0.8174 -4.7474 0.3569 29 1 0.4048 -5.2344 -0.5267 30 6 1.9078 -3.7198 0.0151 31 1 -0.4850 0.8401 -0.0004 32 1 -0.2752 -1.7782 1.4074 33 1 -0.7226 -2.3309 -0.2311 34 1 0.7207 -3.0561 2.8800 35 1 -0.5990 -4.1903 3.2697 36 1 4.5226 -5.2813 4.1261 37 1 3.8930 -6.0457 5.6052 38 1 5.3239 -7.5359 3.3599 39 1 4.4862 -8.3596 6.1771 40 1 3.7123 -8.8943 4.6660 41 1 5.8505 -9.9106 3.9296 42 1 5.3240 -10.5896 5.4887 43 1 7.7422 -10.0439 5.5275 44 1 6.8402 -9.0310 6.6798 45 1 7.6769 -8.2070 3.8624 46 1 8.4518 -7.6728 5.3730 47 1 6.8395 -5.9771 4.5509 48 1 6.3131 -6.6561 6.1100 49 1 0.7847 -6.6629 1.3757 50 1 2.4130 -5.9490 1.2045 51 1 2.7604 -3.8516 0.6815 52 1 2.2250 -3.8491 -1.0195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049173445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:48 Heat of formation + Delta-G solvation = -97.336477 kcal Electronic energy + Delta-G solvation = -30865.071490 eV Core-core repulsion = 26777.572673 eV Total energy + Delta-G solvation = -4087.498817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.07456 -41.58444 -39.80575 -39.38252 -36.66963 -34.55767 -34.09799 -32.01675 -31.56381 -31.36468 -30.17806 -27.51298 -27.12065 -25.47710 -24.13521 -23.43281 -21.99358 -21.86785 -20.91611 -20.75760 -20.42522 -19.08728 -18.52354 -17.90479 -17.23759 -16.92814 -16.68570 -16.30923 -16.09229 -15.62482 -15.38861 -15.28189 -15.00528 -14.75589 -14.61793 -14.52937 -14.21482 -14.02920 -13.69796 -13.65316 -13.59503 -13.31164 -13.09132 -12.89563 -12.77592 -12.75855 -12.73124 -12.54570 -12.28151 -12.03312 -11.93811 -11.89770 -11.80536 -11.66489 -11.57660 -11.47868 -11.30134 -11.18941 -10.85899 -10.69916 -10.54910 -9.76384 -8.84266 -7.90611 -5.23829 1.25616 1.42767 1.44799 1.53427 1.72674 2.47121 3.10854 3.27628 3.38370 3.40932 3.55475 3.63271 3.71357 3.77347 3.89240 3.92968 3.96623 4.07455 4.19357 4.27618 4.34422 4.45951 4.50459 4.50727 4.56843 4.61218 4.67633 4.70265 4.76382 4.79811 4.83035 4.88366 4.91096 4.97767 5.02892 5.07507 5.09034 5.19408 5.23812 5.31280 5.33561 5.35467 5.35860 5.45628 5.46185 5.53425 5.54264 5.64617 5.72755 6.20327 6.34029 6.85669 7.09017 7.78375 8.40564 9.20984 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015125 B = 0.002763 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.773592 B =10131.319640 C =11091.262591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.242 4.242 8 H 0.077 0.923 9 N -0.621 5.621 10 C 0.192 3.808 11 C -0.110 4.110 12 H 0.123 0.877 13 C 0.125 3.875 14 N -0.600 5.600 15 C 0.495 3.505 16 O -0.575 6.575 17 C 0.098 3.902 18 H 0.136 0.864 19 F -0.188 7.188 20 C -0.131 4.131 21 C -0.078 4.078 22 C -0.131 4.131 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.116 4.116 27 C 0.104 3.896 28 C -0.093 4.093 29 H 0.136 0.864 30 C 0.136 3.864 31 H 0.248 0.752 32 H 0.018 0.982 33 H 0.009 0.991 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.109 0.891 50 H 0.102 0.898 51 H 0.022 0.978 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.900 -22.740 5.304 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.347 5.347 10 C 0.067 3.933 11 C -0.130 4.130 12 H 0.141 0.859 13 C 0.002 3.998 14 N -0.332 5.332 15 C 0.283 3.717 16 O -0.455 6.455 17 C 0.060 3.940 18 H 0.154 0.846 19 F -0.169 7.169 20 C -0.169 4.169 21 C -0.096 4.096 22 C -0.168 4.168 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.153 4.153 27 C -0.017 4.017 28 C -0.112 4.112 29 H 0.154 0.846 30 C 0.011 3.989 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.127 0.873 50 H 0.120 0.880 51 H 0.040 0.960 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.797 -22.274 5.914 25.042 hybrid contribution -0.062 1.853 0.259 1.872 sum 9.734 -20.421 6.173 23.449 Atomic orbital electron populations 1.70140 1.06216 1.25406 1.57640 1.25594 0.96474 1.00941 1.02549 0.85181 0.77802 0.79630 0.77453 1.20952 1.22226 1.19707 1.19328 0.91509 0.84271 1.42023 0.90552 1.44467 1.09857 1.01219 1.79184 1.20806 0.85364 0.91458 0.95681 1.23060 1.00542 0.97107 0.92243 0.85865 1.21652 0.91315 0.89214 0.97578 1.48454 1.41238 1.33173 1.10336 1.21363 0.81773 0.86314 0.82275 1.90701 1.66001 1.56450 1.32307 1.21681 0.91093 0.80459 1.00804 0.84608 1.92780 1.86366 1.52318 1.85420 1.22108 0.92977 1.00511 1.01284 1.21138 0.93575 0.93546 1.01332 1.21952 0.99733 0.94838 1.00293 1.21527 0.94886 0.97619 1.01362 1.21562 0.97240 0.97604 0.99442 1.21509 0.97795 0.94818 1.01251 1.21575 0.94582 0.98582 1.00590 1.22410 1.03560 0.96149 0.79625 1.22893 0.94728 0.94817 0.98726 0.84611 1.21405 0.95137 0.84490 0.97885 0.94325 0.96406 0.97329 0.94842 0.91615 0.89977 0.91479 0.89320 0.93382 0.90145 0.91312 0.91854 0.91319 0.92753 0.91333 0.91675 0.91814 0.92739 0.87345 0.88032 0.96013 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.61 10.62 21.65 0.23 -56.38 16 2 C -0.06 -3.52 5.40 84.86 0.46 -3.06 16 3 Si 0.97 46.09 29.56 68.60 2.03 48.11 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.24 -13.46 10.21 84.03 0.86 -12.60 16 8 H 0.08 4.11 7.85 -2.91 -0.02 4.08 16 9 N -0.62 -30.71 3.38 -697.73 -2.35 -33.07 16 10 C 0.19 9.03 4.55 86.66 0.39 9.43 16 11 C -0.11 -3.60 4.09 -9.41 -0.04 -3.64 16 12 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 13 C 0.13 4.42 6.24 86.58 0.54 4.96 16 14 N -0.60 -17.64 3.31 -817.55 -2.70 -20.34 16 15 C 0.50 15.45 7.18 87.66 0.63 16.08 16 16 O -0.58 -23.38 16.92 -3.04 -0.05 -23.43 16 17 C 0.10 2.14 3.49 29.85 0.10 2.25 16 18 H 0.14 1.97 6.19 -2.39 -0.01 1.96 16 19 F -0.19 -4.36 13.88 44.97 0.62 -3.73 16 20 C -0.13 -2.76 4.27 30.59 0.13 -2.63 16 21 C -0.08 -1.24 2.19 -10.79 -0.02 -1.26 16 22 C -0.13 -2.13 4.65 30.59 0.14 -1.99 16 23 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 24 C -0.12 -1.51 5.92 30.60 0.18 -1.33 16 25 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 26 C -0.12 -1.79 5.21 30.60 0.16 -1.63 16 27 C 0.10 2.13 5.59 86.66 0.48 2.61 16 28 C -0.09 -2.45 4.09 -9.41 -0.04 -2.49 16 29 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 30 C 0.14 4.98 6.63 86.57 0.57 5.55 16 31 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.02 0.97 6.87 -2.39 -0.02 0.95 16 33 H 0.01 0.45 7.80 -2.39 -0.02 0.43 16 34 H 0.03 1.49 7.47 -2.39 -0.02 1.47 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.70 8.05 -2.39 -0.02 1.68 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.39 5.43 -2.39 -0.01 1.38 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 0.77 8.14 -2.38 -0.02 0.76 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.10 1.60 6.58 -2.39 -0.02 1.58 16 51 H 0.02 0.80 7.47 -2.38 -0.02 0.78 16 52 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -73.35 392.82 3.57 -69.77 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.88 Total: 11.49 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 4.92 Total: 7.58 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -4.83 Total: -109.79 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.62 Total: -3.73 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -73.35 3.57 -69.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049173445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.562 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds