Wall clock time and date at job start Tue Mar 31 2020 21:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47144 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47049 * 300.00164 * 3 2 1 6 6 H 1.48505 * 109.47090 * 60.00171 * 3 2 1 7 7 C 1.38809 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.46640 * 125.33048 * 0.03249 * 9 7 2 11 11 C 1.53682 * 108.01199 * 180.81011 * 10 9 7 12 12 H 1.08999 * 113.06372 * 253.80605 * 11 10 9 13 13 C 1.53737 * 109.34188 * 127.55472 * 11 10 9 14 14 N 1.46665 * 107.94070 * 266.25313 * 13 11 10 15 15 C 1.34777 * 125.33267 * 180.54026 * 14 13 11 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99675 * 179.72797 * 15 14 13 18 18 H 1.09003 * 109.47209 * 345.27846 * 17 15 14 19 19 F 1.39893 * 109.47340 * 105.27959 * 17 15 14 20 20 C 1.53002 * 109.47352 * 225.27737 * 17 15 14 21 21 C 1.52995 * 109.47599 * 174.99964 * 20 17 15 22 22 C 1.53002 * 109.46978 * 294.99888 * 21 20 17 23 23 C 1.53000 * 109.47129 * 179.97438 * 22 21 20 24 24 C 1.53007 * 109.46904 * 60.00489 * 23 22 21 25 25 C 1.53002 * 109.46828 * 299.99695 * 24 23 22 26 26 C 1.53000 * 109.47148 * 175.00329 * 21 20 17 27 27 C 1.46772 * 109.32760 * 0.81078 * 14 13 11 28 28 C 1.54160 * 106.52505 * 341.08802 * 27 14 13 29 29 H 1.09003 * 113.83077 * 265.68429 * 28 27 14 30 30 C 1.46750 * 125.33267 * 180.02562 * 9 7 2 31 31 H 0.97000 * 120.00055 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.76455 * 61.17012 * 10 9 7 33 33 H 1.08999 * 109.76281 * 300.45602 * 10 9 7 34 34 H 1.09002 * 109.77057 * 146.63402 * 13 11 10 35 35 H 1.09001 * 109.76705 * 25.87903 * 13 11 10 36 36 H 1.09007 * 109.46954 * 295.00610 * 20 17 15 37 37 H 1.09007 * 109.47027 * 54.99555 * 20 17 15 38 38 H 1.09001 * 109.46703 * 54.99921 * 21 20 17 39 39 H 1.08992 * 109.47399 * 299.99818 * 22 21 20 40 40 H 1.09004 * 109.47190 * 60.00043 * 22 21 20 41 41 H 1.08996 * 109.47626 * 300.00721 * 23 22 21 42 42 H 1.09002 * 109.47202 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.47461 * 179.97438 * 24 23 22 44 44 H 1.08997 * 109.47018 * 59.99220 * 24 23 22 45 45 H 1.08992 * 109.47399 * 300.00123 * 25 24 23 46 46 H 1.08998 * 109.47180 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.46806 * 299.99736 * 26 21 20 48 48 H 1.08992 * 109.47479 * 60.00029 * 26 21 20 49 49 H 1.08999 * 110.03012 * 100.50509 * 27 14 13 50 50 H 1.08998 * 110.02668 * 221.92499 * 27 14 13 51 51 H 1.08996 * 110.00143 * 42.36740 * 30 9 7 52 52 H 1.09001 * 110.00578 * 280.99909 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1344 -2.5243 -0.0007 11 6 -0.4717 -4.0234 0.0200 12 1 -0.8370 -4.3922 -0.9384 13 6 -1.4477 -4.3099 1.1728 14 7 -0.6597 -4.7126 2.3424 15 6 -1.1665 -5.0541 3.5437 16 8 -2.3663 -5.0433 3.7211 17 6 -0.2427 -5.4558 4.6645 18 1 0.7485 -5.6639 4.2616 19 9 -0.1586 -4.4148 5.5953 20 6 -0.7881 -6.7101 5.3503 21 6 0.2108 -7.1899 6.4051 22 6 1.5038 -7.6340 5.7182 23 6 2.5031 -8.1134 6.7730 24 6 1.9046 -9.2916 7.5442 25 6 0.6116 -8.8475 8.2311 26 6 -0.3879 -8.3683 7.1757 27 6 0.7675 -4.6792 2.0015 28 6 0.8515 -4.7082 0.4625 29 1 0.9784 -5.7079 0.0471 30 6 1.9382 -3.7215 -0.0005 31 1 -0.4850 0.8400 0.0004 32 1 -0.5473 -2.0660 -0.8994 33 1 -0.5497 -2.0408 0.8835 34 1 -2.1260 -5.1149 0.8902 35 1 -2.0186 -3.4107 1.4045 36 1 -1.7392 -6.4777 5.8296 37 1 -0.9375 -7.4942 4.6079 38 1 0.4278 -6.3760 7.0968 39 1 1.2868 -8.4479 5.0265 40 1 1.9304 -6.7946 5.1691 41 1 2.7200 -7.2992 7.4645 42 1 3.4244 -8.4293 6.2837 43 1 2.6166 -9.6334 8.2954 44 1 1.6876 -10.1057 6.8527 45 1 0.8286 -8.0334 8.9225 46 1 0.1850 -9.6870 8.7801 47 1 -1.3091 -8.0519 7.6651 48 1 -0.6049 -9.1822 6.4841 49 1 1.2218 -3.7660 2.3858 50 1 1.2713 -5.5513 2.4183 51 1 2.7815 -3.7445 0.6897 52 1 2.2714 -3.9789 -1.0060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049173446.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:51 Heat of formation + Delta-G solvation = -100.081446 kcal Electronic energy + Delta-G solvation = -30873.583203 eV Core-core repulsion = 26785.965355 eV Total energy + Delta-G solvation = -4087.617848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.02192 -41.57777 -39.88354 -39.40677 -36.66341 -34.59587 -34.13147 -32.16971 -31.60141 -31.14403 -30.01665 -27.51339 -27.08524 -25.72830 -24.23169 -23.39546 -21.92272 -21.82555 -20.82634 -20.71542 -20.46876 -19.06972 -18.64375 -17.79547 -17.16947 -17.06749 -16.52578 -16.26148 -16.15388 -15.62912 -15.54099 -15.14817 -14.97974 -14.87808 -14.73447 -14.61150 -14.22784 -14.03665 -13.64750 -13.61885 -13.33472 -13.25526 -13.13436 -13.08054 -12.92666 -12.76964 -12.71400 -12.60824 -12.14996 -11.95200 -11.94808 -11.89887 -11.86721 -11.79912 -11.53355 -11.36074 -11.31223 -11.02907 -10.85300 -10.79700 -10.69298 -9.79750 -8.87121 -7.85777 -5.20327 1.20165 1.44736 1.45343 1.55466 1.73187 2.48870 3.04410 3.32999 3.36344 3.43594 3.52840 3.57859 3.70107 3.83080 3.88945 3.93017 3.98169 4.03895 4.23667 4.28010 4.35081 4.45121 4.48571 4.50550 4.53130 4.60267 4.65172 4.69364 4.70491 4.79817 4.82751 4.85977 4.90437 4.98876 5.04752 5.08007 5.08835 5.14409 5.21568 5.31338 5.33547 5.35626 5.40044 5.43620 5.48944 5.50277 5.62406 5.64416 5.77301 6.21356 6.29966 6.81027 7.11072 7.81089 8.41465 9.24433 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.002703 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.810695 B =10357.655312 C =10737.096935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.260 1.260 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.233 4.233 8 H 0.088 0.912 9 N -0.624 5.624 10 C 0.196 3.804 11 C -0.111 4.111 12 H 0.119 0.881 13 C 0.121 3.879 14 N -0.600 5.600 15 C 0.497 3.503 16 O -0.569 6.569 17 C 0.086 3.914 18 H 0.130 0.870 19 F -0.205 7.205 20 C -0.123 4.123 21 C -0.083 4.083 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.111 4.111 27 C 0.104 3.896 28 C -0.090 4.090 29 H 0.144 0.856 30 C 0.137 3.863 31 H 0.243 0.757 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.071 0.929 49 H 0.051 0.949 50 H 0.117 0.883 51 H 0.051 0.949 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -23.093 10.853 25.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.221 1.221 6 H -0.226 1.226 7 C -0.363 4.363 8 H 0.106 0.894 9 N -0.350 5.350 10 C 0.070 3.930 11 C -0.131 4.131 12 H 0.137 0.863 13 C -0.002 4.002 14 N -0.332 5.332 15 C 0.285 3.715 16 O -0.448 6.448 17 C 0.048 3.952 18 H 0.147 0.853 19 F -0.186 7.186 20 C -0.161 4.161 21 C -0.102 4.102 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.149 4.149 27 C -0.017 4.017 28 C -0.109 4.109 29 H 0.162 0.838 30 C 0.012 3.988 31 H 0.052 0.948 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.135 0.865 51 H 0.069 0.931 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.831 -22.872 11.037 25.683 hybrid contribution -0.212 2.124 -0.054 2.135 sum 3.619 -20.748 10.983 23.753 Atomic orbital electron populations 1.70211 1.06376 1.24911 1.58772 1.25643 0.96506 1.01125 1.03029 0.85064 0.78514 0.79747 0.76379 1.18441 1.22147 1.22615 1.19491 0.91123 0.83569 1.42069 0.89432 1.44526 1.02078 1.01514 1.86932 1.20772 0.84254 0.90492 0.97466 1.23013 0.95428 0.96387 0.98267 0.86282 1.21780 0.94229 0.99375 0.84787 1.48451 1.09381 1.64366 1.10958 1.21250 0.89300 0.77611 0.83370 1.90681 1.17285 1.54653 1.82189 1.21894 1.01285 0.86408 0.85653 0.85283 1.92849 1.97507 1.61167 1.67093 1.22086 0.99945 0.94340 0.99711 1.21131 0.94731 0.98257 0.96087 1.21716 0.94455 1.01336 0.98255 1.21528 0.98283 0.98157 0.97781 1.21539 0.96695 0.97883 0.99462 1.21540 0.95724 1.00860 0.97555 1.21547 0.98167 0.97213 0.97935 1.22362 0.80167 1.02716 0.96485 1.23021 0.94025 1.00506 0.93336 0.83847 1.21434 0.94955 0.83771 0.98654 0.94759 0.97756 0.97789 0.89630 0.94329 0.91195 0.88279 0.91764 0.90475 0.91839 0.92664 0.91096 0.91633 0.91482 0.92567 0.91274 0.92349 0.91031 0.93065 0.86503 0.93119 0.94825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.24 10.25 21.65 0.22 -58.02 16 2 C -0.07 -4.01 5.48 84.86 0.47 -3.54 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 7 C -0.23 -12.67 10.25 84.03 0.86 -11.81 16 8 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.62 -30.22 3.37 -697.92 -2.35 -32.57 16 10 C 0.20 9.37 4.75 86.58 0.41 9.78 16 11 C -0.11 -3.70 4.02 -9.48 -0.04 -3.73 16 12 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 13 C 0.12 4.06 6.23 86.60 0.54 4.60 16 14 N -0.60 -18.86 3.31 -817.00 -2.71 -21.57 16 15 C 0.50 16.22 7.18 87.66 0.63 16.85 16 16 O -0.57 -22.70 16.91 -3.04 -0.05 -22.76 16 17 C 0.09 2.15 3.40 29.85 0.10 2.25 16 18 H 0.13 2.42 4.38 -2.39 -0.01 2.41 16 19 F -0.21 -6.40 16.66 44.97 0.75 -5.65 16 20 C -0.12 -2.45 4.16 30.59 0.13 -2.32 16 21 C -0.08 -1.34 2.15 -10.79 -0.02 -1.36 16 22 C -0.12 -1.55 4.96 30.59 0.15 -1.40 16 23 C -0.12 -1.44 5.92 30.60 0.18 -1.26 16 24 C -0.12 -1.28 5.92 30.60 0.18 -1.09 16 25 C -0.12 -1.43 5.93 30.61 0.18 -1.25 16 26 C -0.11 -1.52 5.21 30.61 0.16 -1.36 16 27 C 0.10 2.80 5.66 86.72 0.49 3.29 16 28 C -0.09 -2.39 4.19 -9.26 -0.04 -2.42 16 29 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 30 C 0.14 4.74 6.37 86.64 0.55 5.29 16 31 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.00 0.23 7.45 -2.38 -0.02 0.21 16 33 H 0.00 0.22 6.51 -2.39 -0.02 0.21 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.04 1.57 7.44 -2.39 -0.02 1.56 16 36 H 0.07 1.66 8.05 -2.38 -0.02 1.64 16 37 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 1.22 7.82 -2.39 -0.02 1.21 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.82 6.46 -2.38 -0.02 0.81 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.05 1.74 7.72 -2.39 -0.02 1.72 16 50 H 0.12 1.99 6.92 -2.39 -0.02 1.98 16 51 H 0.05 1.65 7.94 -2.39 -0.02 1.63 16 52 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.87 393.97 3.71 -70.17 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.89 Total: 11.83 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 4.93 Total: 10.51 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -4.84 Total: -112.16 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.75 Total: -5.65 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.87 3.71 -70.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049173446.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.916 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds