Wall clock time and date at job start Tue Mar 31 2020 21:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00111 * 2 1 4 4 H 1.48501 * 109.46990 * 270.00007 * 3 2 1 5 5 H 1.48502 * 109.47320 * 29.99829 * 3 2 1 6 6 H 1.48500 * 109.47306 * 150.00394 * 3 2 1 7 7 C 1.38818 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00064 * 164.75871 * 7 2 1 9 9 N 1.36936 * 119.99748 * 344.75239 * 7 2 1 10 10 C 1.46929 * 120.63432 * 331.60856 * 9 7 2 11 11 C 1.53190 * 108.77498 * 233.58800 * 10 9 7 12 12 C 1.53042 * 109.31338 * 305.36132 * 11 10 9 13 13 C 1.53038 * 109.53754 * 61.36657 * 12 11 10 14 14 H 1.09005 * 109.49601 * 58.62101 * 13 12 11 15 15 C 1.53002 * 109.49852 * 178.68337 * 13 12 11 16 16 H 1.08997 * 109.52214 * 59.92128 * 15 13 12 17 17 C 1.53042 * 109.49528 * 180.02562 * 15 13 12 18 18 C 1.53042 * 109.53428 * 181.31660 * 17 15 13 19 19 C 1.53190 * 109.31056 * 298.63515 * 18 17 15 20 20 N 1.46920 * 108.78016 * 54.63910 * 19 18 17 21 21 C 1.34777 * 120.63519 * 126.40569 * 20 19 18 22 22 O 1.21289 * 119.99974 * 173.84996 * 21 20 19 23 23 C 1.50702 * 119.99884 * 353.85764 * 21 20 19 24 24 C 1.53000 * 115.54845 * 291.75318 * 23 21 20 25 25 F 1.39895 * 109.47147 * 294.32906 * 24 23 21 26 26 C 1.53002 * 117.49797 * 146.08409 * 23 21 20 27 27 C 1.53000 * 117.49437 * 77.42562 * 23 21 20 28 28 C 1.46925 * 118.73607 * 306.38785 * 20 19 18 29 29 C 1.46926 * 120.62936 * 151.58905 * 9 7 2 30 30 H 0.96996 * 120.00141 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.58520 * 113.79710 * 10 9 7 32 32 H 1.09006 * 109.70235 * 353.44365 * 10 9 7 33 33 H 1.09006 * 109.49423 * 185.41314 * 11 10 9 34 34 H 1.08995 * 109.52329 * 65.33556 * 11 10 9 35 35 H 1.09004 * 109.46141 * 301.34817 * 12 11 10 36 36 H 1.08999 * 109.44907 * 181.38217 * 12 11 10 37 37 H 1.08997 * 109.45919 * 61.30026 * 17 15 13 38 38 H 1.08992 * 109.44828 * 301.33064 * 17 15 13 39 39 H 1.09000 * 109.49720 * 58.58419 * 18 17 15 40 40 H 1.08998 * 109.49372 * 178.68460 * 18 17 15 41 41 H 1.09009 * 109.58268 * 174.42556 * 19 18 17 42 42 H 1.08996 * 109.58951 * 294.84365 * 19 18 17 43 43 H 1.08999 * 109.47012 * 54.32905 * 24 23 21 44 44 H 1.09004 * 109.46964 * 174.32568 * 24 23 21 45 45 H 1.09005 * 117.49641 * 359.97438 * 26 23 21 46 46 H 1.08997 * 117.49815 * 145.01611 * 26 23 21 47 47 H 1.09007 * 117.49264 * 214.97613 * 27 23 21 48 48 H 1.08995 * 117.50333 * 359.97438 * 27 23 21 49 49 H 1.09000 * 109.59146 * 293.81964 * 28 20 19 50 50 H 1.09000 * 109.70778 * 173.46260 * 28 20 19 51 51 H 1.09001 * 109.58962 * 6.61981 * 29 9 7 52 52 H 1.09008 * 109.58257 * 246.20311 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0618 -1.2185 -0.2464 9 7 1.3617 -2.3673 0.3108 10 6 0.1978 -2.3597 1.2076 11 6 0.4433 -3.3590 2.3425 12 6 0.7692 -4.7308 1.7474 13 6 2.0434 -4.6337 0.9053 14 1 2.8655 -4.2820 1.5287 15 6 2.3867 -6.0125 0.3377 16 1 1.5647 -6.3647 -0.2855 17 6 3.6613 -5.9154 -0.5039 18 6 3.9872 -7.2872 -1.0990 19 6 4.2320 -8.2866 0.0360 20 7 3.0678 -8.2789 0.9322 21 6 2.4291 -9.4256 1.2382 22 8 1.5411 -9.4233 2.0644 23 6 2.8184 -10.7107 0.5540 24 6 2.4866 -10.7909 -0.9374 25 9 1.0981 -10.7820 -1.1074 26 6 2.7238 -12.0019 1.3693 27 6 4.0937 -11.4075 1.0327 28 6 2.6133 -6.9974 1.4889 29 6 1.8162 -3.6489 -0.2458 30 1 -0.4850 0.8400 -0.0004 31 1 -0.6936 -2.6499 0.6516 32 1 0.0605 -1.3614 1.6230 33 1 -0.4512 -3.4339 2.9610 34 1 1.2800 -3.0189 2.9526 35 1 -0.0578 -5.0594 1.1179 36 1 0.9202 -5.4493 2.5530 37 1 4.4881 -5.5871 0.1259 38 1 3.5105 -5.1967 -1.3093 39 1 3.1503 -7.6273 -1.7090 40 1 4.8819 -7.2123 -1.7170 41 1 4.3668 -9.2854 -0.3794 42 1 5.1233 -7.9967 0.5923 43 1 2.9213 -9.9345 -1.4529 44 1 2.8976 -11.7114 -1.3520 45 1 2.3803 -11.9218 2.4007 46 1 2.4254 -12.9086 0.8431 47 1 4.6961 -11.9236 0.2850 48 1 4.6512 -10.9364 1.8421 49 1 3.3727 -6.6022 2.1637 50 1 1.6807 -7.1435 2.0338 51 1 2.7492 -3.5008 -0.7896 52 1 1.0566 -4.0441 -0.9204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053038474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:22 Heat of formation + Delta-G solvation = -72.125631 kcal Electronic energy + Delta-G solvation = -31174.531431 eV Core-core repulsion = 27088.125839 eV Total energy + Delta-G solvation = -4086.405593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -48.63719 -41.62964 -39.99182 -38.26348 -37.61043 -35.51684 -33.94380 -32.77155 -32.22121 -30.01277 -28.68447 -27.45299 -26.67896 -24.96408 -24.14764 -23.44668 -22.99836 -22.66720 -21.04018 -20.68372 -19.64571 -18.68741 -18.16855 -17.50203 -16.99113 -16.86426 -16.67686 -16.37150 -15.80990 -15.77910 -15.64857 -15.28849 -15.14396 -14.91670 -14.87103 -14.57056 -14.39597 -14.13821 -13.90470 -13.80417 -13.60773 -13.04592 -13.00179 -12.88719 -12.69381 -12.47992 -12.44862 -12.31331 -12.28294 -11.99170 -11.95384 -11.83002 -11.72355 -11.62200 -11.51316 -11.47910 -11.25672 -11.10155 -10.82377 -10.70351 -10.54173 -9.66768 -8.66930 -7.86486 -5.33982 1.43688 1.45913 1.47537 1.57305 1.89666 2.50853 2.54691 3.28021 3.28627 3.42173 3.59419 3.65300 3.74290 3.81159 3.86867 3.91568 4.08415 4.10193 4.15359 4.20503 4.29344 4.33745 4.37211 4.50184 4.59121 4.60418 4.63618 4.69348 4.72204 4.77653 4.79894 4.86149 4.87942 4.89948 4.94576 4.99832 5.03976 5.06026 5.15067 5.16268 5.23953 5.31443 5.37863 5.41074 5.50669 5.52923 5.57725 5.65728 5.75922 6.37178 6.39344 7.08239 7.14395 7.85982 8.39118 9.19831 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.002597 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.044860 B =10779.912573 C =11155.341632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.970 3.030 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.260 4.260 8 H 0.070 0.930 9 N -0.611 5.611 10 C 0.176 3.824 11 C -0.131 4.131 12 C -0.101 4.101 13 C -0.081 4.081 14 H 0.068 0.932 15 C -0.080 4.080 16 H 0.054 0.946 17 C -0.116 4.116 18 C -0.131 4.131 19 C 0.101 3.899 20 N -0.602 5.602 21 C 0.541 3.459 22 O -0.588 6.588 23 C -0.220 4.220 24 C 0.097 3.903 25 F -0.236 7.236 26 C -0.148 4.148 27 C -0.113 4.113 28 C 0.121 3.879 29 C 0.156 3.844 30 H 0.249 0.751 31 H -0.012 1.012 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.083 0.917 46 H 0.125 0.875 47 H 0.149 0.851 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.067 0.933 51 H 0.061 0.939 52 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.576 -25.816 -1.332 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.390 4.390 8 H 0.088 0.912 9 N -0.334 5.334 10 C 0.050 3.950 11 C -0.170 4.170 12 C -0.139 4.139 13 C -0.101 4.101 14 H 0.087 0.913 15 C -0.100 4.100 16 H 0.072 0.928 17 C -0.154 4.154 18 C -0.169 4.169 19 C -0.020 4.020 20 N -0.334 5.334 21 C 0.330 3.670 22 O -0.468 6.468 23 C -0.223 4.223 24 C 0.043 3.957 25 F -0.217 7.217 26 C -0.185 4.185 27 C -0.150 4.150 28 C -0.002 4.002 29 C 0.031 3.969 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.144 0.856 45 H 0.101 0.899 46 H 0.143 0.857 47 H 0.167 0.833 48 H 0.122 0.878 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.079 0.921 52 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 14.003 -25.660 -0.919 29.246 hybrid contribution -0.824 1.630 0.112 1.830 sum 13.179 -24.030 -0.807 27.419 Atomic orbital electron populations 1.70195 1.06853 1.25775 1.55751 1.25877 0.96073 1.01700 1.01354 0.85244 0.78066 0.79335 0.77618 1.21008 1.22093 1.19247 1.19540 0.92396 0.85642 1.41412 0.91234 1.44321 1.33967 1.02793 1.52287 1.20581 0.87444 0.97507 0.89449 1.22019 1.00601 0.96204 0.98185 1.21460 0.97333 0.96283 0.98816 1.21447 0.97287 0.94108 0.97269 0.91347 1.21346 0.98729 0.93428 0.96454 0.92791 1.21612 0.96336 0.98050 0.99387 1.21958 1.03297 0.94051 0.97583 1.22155 0.86985 1.02011 0.90884 1.48176 1.31392 1.05886 1.47901 1.20092 0.80565 0.85090 0.81220 1.90673 1.33395 1.86661 1.36077 1.22040 1.10326 0.92639 0.97322 1.21887 0.75728 1.06750 0.91349 1.92770 1.34339 1.98343 1.96284 1.23109 1.00783 0.94326 1.00312 1.23317 0.88827 0.99310 1.03513 1.21587 1.00471 0.82526 0.95571 1.21031 0.96861 0.85591 0.93438 0.94198 0.99412 0.92768 0.91980 0.92782 0.93963 0.91466 0.90831 0.91886 0.92223 0.87593 0.87010 0.89259 0.88549 0.85591 0.89876 0.85650 0.83316 0.87762 0.90480 0.91475 0.92102 0.98172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.22 11.10 21.65 0.24 -56.98 16 2 C -0.06 -3.14 4.96 84.86 0.42 -2.72 16 3 Si 0.97 45.35 29.58 68.60 2.03 47.38 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.26 -14.49 9.59 84.04 0.81 -13.68 16 8 H 0.07 3.72 7.87 -2.91 -0.02 3.69 16 9 N -0.61 -31.65 2.99 -699.08 -2.09 -33.75 16 10 C 0.18 9.03 5.29 86.36 0.46 9.49 16 11 C -0.13 -5.32 6.08 30.67 0.19 -5.13 16 12 C -0.10 -3.62 4.86 30.62 0.15 -3.47 16 13 C -0.08 -2.72 1.92 -10.72 -0.02 -2.74 16 14 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 15 C -0.08 -2.14 1.92 -10.71 -0.02 -2.16 16 16 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 17 C -0.12 -2.43 4.86 30.62 0.15 -2.28 16 18 C -0.13 -1.80 6.03 30.67 0.18 -1.62 16 19 C 0.10 1.22 5.67 86.36 0.49 1.71 16 20 N -0.60 -12.79 2.97 -818.90 -2.43 -15.23 16 21 C 0.54 13.63 6.91 87.66 0.61 14.24 16 22 O -0.59 -20.97 16.22 -3.06 -0.05 -21.02 16 23 C -0.22 -3.39 1.07 -52.93 -0.06 -3.45 16 24 C 0.10 1.22 6.98 71.98 0.50 1.72 16 25 F -0.24 -5.51 17.33 44.97 0.78 -4.73 16 26 C -0.15 -1.99 9.79 30.62 0.30 -1.69 16 27 C -0.11 -0.80 9.12 30.62 0.28 -0.52 16 28 C 0.12 3.10 5.17 86.36 0.45 3.55 16 29 C 0.16 6.56 5.28 86.36 0.46 7.01 16 30 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 31 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.05 3.12 6.03 -2.38 -0.01 3.10 16 33 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.07 2.15 6.49 -2.39 -0.02 2.13 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.49 6.50 -2.39 -0.02 1.48 16 39 H 0.06 0.93 7.89 -2.39 -0.02 0.91 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.11 0.74 4.53 -2.38 -0.01 0.73 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 0.93 6.18 -2.39 -0.01 0.92 16 44 H 0.13 0.55 8.09 -2.38 -0.02 0.53 16 45 H 0.08 1.53 8.05 -2.38 -0.02 1.51 16 46 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.15 -0.07 8.14 -2.38 -0.02 -0.09 16 48 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.07 2.10 5.64 -2.39 -0.01 2.09 16 51 H 0.06 2.43 6.52 -2.39 -0.02 2.41 16 52 H 0.00 0.01 8.14 -2.38 -0.02 0.00 16 Total: -1.00 -77.97 393.10 4.70 -73.27 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.90 Total: 12.80 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 5.33 Total: -1.75 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.29 Total: -105.96 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.78 Total: -4.73 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.97 4.70 -73.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053038474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.144 kcal (2) G-P(sol) polarization free energy of solvation -77.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds