Wall clock time and date at job start Tue Mar 31 2020 21:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86805 * 119.99869 * 2 1 4 4 H 1.48497 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47024 * 299.99914 * 3 2 1 6 6 H 1.48498 * 109.46712 * 59.99755 * 3 2 1 7 7 C 1.38817 * 120.00333 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99771 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.47088 * 125.62448 * 0.02696 * 9 7 2 11 11 C 1.54474 * 107.42315 * 178.88274 * 10 9 7 12 12 C 1.54581 * 102.75066 * 338.70208 * 11 10 9 13 13 C 1.47578 * 125.62285 * 179.97438 * 9 7 2 14 14 C 1.52073 * 110.52013 * 276.31673 * 12 11 10 15 15 C 1.53195 * 109.67382 * 177.48547 * 14 12 11 16 16 C 1.53186 * 109.27582 * 59.96312 * 15 14 12 17 17 N 1.46936 * 108.93370 * 304.68450 * 16 15 14 18 18 C 1.34776 * 120.71198 * 234.27247 * 17 16 15 19 19 O 1.21279 * 119.99931 * 175.65250 * 18 17 16 20 20 C 1.50696 * 120.00259 * 355.65636 * 18 17 16 21 21 C 1.53004 * 109.47017 * 277.77534 * 20 18 17 22 22 C 1.53002 * 109.47091 * 180.02562 * 21 20 18 23 23 C 1.52999 * 109.47426 * 59.99450 * 22 21 20 24 24 F 1.39908 * 109.46766 * 60.00036 * 23 22 21 25 25 C 1.52996 * 109.47476 * 300.00608 * 23 22 21 26 26 C 1.52998 * 109.47357 * 157.77405 * 20 18 17 27 27 C 1.47106 * 118.57416 * 54.25382 * 17 16 15 28 28 H 0.97002 * 120.00516 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.87895 * 298.38076 * 10 9 7 30 30 H 1.09000 * 109.88155 * 59.38885 * 10 9 7 31 31 H 1.09002 * 110.73101 * 96.95504 * 11 10 9 32 32 H 1.08999 * 110.73258 * 220.26791 * 11 10 9 33 33 H 1.09002 * 110.38001 * 322.15791 * 13 9 7 34 34 H 1.08998 * 110.37375 * 84.40597 * 13 9 7 35 35 H 1.08990 * 109.44133 * 297.55097 * 14 12 11 36 36 H 1.09006 * 109.43260 * 57.46936 * 14 12 11 37 37 H 1.09003 * 109.50130 * 179.90563 * 15 14 12 38 38 H 1.08997 * 109.50368 * 299.98200 * 15 14 12 39 39 H 1.08994 * 109.56401 * 64.52039 * 16 15 14 40 40 H 1.09008 * 109.55726 * 184.74323 * 16 15 14 41 41 H 1.09000 * 109.47099 * 37.77359 * 20 18 17 42 42 H 1.09000 * 109.47043 * 299.99858 * 21 20 18 43 43 H 1.08994 * 109.47092 * 59.99577 * 21 20 18 44 44 H 1.09000 * 109.47039 * 299.99833 * 22 21 20 45 45 H 1.08999 * 109.47197 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.47363 * 179.97438 * 23 22 21 47 47 H 1.09004 * 109.46668 * 299.99995 * 25 23 22 48 48 H 1.08994 * 109.47134 * 179.97438 * 25 23 22 49 49 H 1.09006 * 109.47297 * 299.99911 * 26 20 18 50 50 H 1.09000 * 109.47054 * 59.99927 * 26 20 18 51 51 H 1.09006 * 109.57771 * 187.93732 * 27 17 16 52 52 H 1.09000 * 109.57617 * 67.55444 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1381 -2.5323 -0.0006 11 6 -0.4539 -4.0441 -0.0289 12 6 0.8507 -4.6547 -0.5896 13 6 1.9348 -3.7323 0.0005 14 6 0.8587 -4.5920 -2.1090 15 6 2.1850 -5.1440 -2.6411 16 6 2.3452 -6.5987 -2.1886 17 7 2.2268 -6.6586 -0.7252 18 6 3.1934 -7.2292 0.0208 19 8 3.1209 -7.2019 1.2311 20 6 4.3643 -7.9011 -0.6489 21 6 3.9686 -9.3192 -1.0656 22 6 5.1576 -10.0016 -1.7449 23 6 6.3344 -10.0662 -0.7693 24 9 5.9614 -10.7981 0.3633 25 6 6.7300 -8.6482 -0.3526 26 6 5.5414 -7.9658 0.3263 27 6 1.0308 -6.0820 -0.0919 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5555 -2.0833 0.9008 30 1 -0.5575 -2.0496 -0.8833 31 1 -0.6525 -4.4157 0.9764 32 1 -1.2950 -4.2503 -0.6908 33 1 2.8265 -3.7449 -0.6263 34 1 2.1822 -4.0368 1.0175 35 1 0.0345 -5.1878 -2.5010 36 1 0.7425 -3.5567 -2.4298 37 1 2.1870 -5.0993 -3.7302 38 1 3.0099 -4.5479 -2.2509 39 1 1.5658 -7.2102 -2.6431 40 1 3.3240 -6.9697 -2.4926 41 1 4.6545 -7.3308 -1.5313 42 1 3.6784 -9.8895 -0.1832 43 1 3.1300 -9.2731 -1.7603 44 1 5.4482 -9.4314 -2.6273 45 1 4.8756 -11.0116 -2.0422 46 1 7.1813 -10.5528 -1.2531 47 1 7.0205 -8.0780 -1.2349 48 1 7.5680 -8.6944 0.3429 49 1 5.8233 -6.9555 0.6232 50 1 5.2512 -8.5361 1.2087 51 1 1.1568 -6.0780 0.9908 52 1 0.1553 -6.6746 -0.3574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054191233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:10 Heat of formation + Delta-G solvation = -98.515008 kcal Electronic energy + Delta-G solvation = -31581.787867 eV Core-core repulsion = 27494.237945 eV Total energy + Delta-G solvation = -4087.549922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.53797 -41.76742 -40.14114 -37.98017 -37.24664 -34.81100 -33.09629 -32.30669 -31.82257 -31.45833 -30.07246 -27.53869 -26.66822 -25.59274 -24.01019 -23.70082 -23.24295 -22.01463 -20.96551 -20.08338 -19.27130 -18.88979 -18.15708 -17.46705 -16.95701 -16.74030 -16.53327 -16.40453 -16.22757 -15.96004 -15.57506 -15.08360 -14.98474 -14.65931 -14.49924 -14.36805 -14.18535 -13.95558 -13.79585 -13.48881 -13.41990 -13.20638 -13.17565 -12.95341 -12.81210 -12.75837 -12.74301 -12.31855 -12.16095 -12.09725 -12.00591 -11.99851 -11.71525 -11.64661 -11.57187 -11.40633 -11.22540 -11.14064 -11.00652 -10.72650 -10.50458 -9.54397 -8.91177 -7.87341 -5.22491 1.41798 1.43575 1.53683 1.64359 2.03073 2.46535 3.29956 3.39644 3.57163 3.59524 3.65146 3.69977 3.85306 3.93118 3.95652 4.01894 4.09036 4.13567 4.17931 4.19594 4.32505 4.34159 4.41673 4.51486 4.55678 4.60894 4.63720 4.75594 4.77692 4.78002 4.83653 4.89900 4.91202 4.95786 5.02827 5.04511 5.07503 5.16015 5.17403 5.22608 5.27160 5.28518 5.40627 5.46745 5.49271 5.55192 5.56381 5.67220 5.76689 6.17487 6.49285 7.08528 7.22409 7.75290 8.41014 9.23062 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.002890 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.570319 B = 9686.093976 C =10316.748022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.623 5.623 10 C 0.190 3.810 11 C -0.123 4.123 12 C -0.070 4.070 13 C 0.154 3.846 14 C -0.093 4.093 15 C -0.132 4.132 16 C 0.106 3.894 17 N -0.606 5.606 18 C 0.509 3.491 19 O -0.594 6.594 20 C -0.098 4.098 21 C -0.105 4.105 22 C -0.136 4.136 23 C 0.079 3.921 24 F -0.237 7.237 25 C -0.139 4.139 26 C -0.106 4.106 27 C 0.135 3.865 28 H 0.247 0.753 29 H -0.003 1.003 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.037 0.963 34 H -0.012 1.012 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.045 0.955 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.088 0.912 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.046 0.954 51 H 0.060 0.940 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.460 -23.418 -11.939 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.221 1.221 7 C -0.371 4.371 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.065 3.935 11 C -0.162 4.162 12 C -0.071 4.071 13 C 0.029 3.971 14 C -0.131 4.131 15 C -0.170 4.170 16 C -0.015 4.015 17 N -0.337 5.337 18 C 0.299 3.701 19 O -0.474 6.474 20 C -0.119 4.119 21 C -0.143 4.143 22 C -0.174 4.174 23 C 0.043 3.957 24 F -0.218 7.218 25 C -0.177 4.177 26 C -0.144 4.144 27 C 0.012 3.988 28 H 0.056 0.944 29 H 0.015 0.985 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.006 0.994 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.121 0.879 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.064 0.936 43 H 0.111 0.889 44 H 0.133 0.867 45 H 0.107 0.893 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.383 -23.217 -11.289 27.469 hybrid contribution -0.012 1.759 1.151 2.102 sum 9.372 -21.458 -10.138 25.516 Atomic orbital electron populations 1.70195 1.06203 1.25164 1.58280 1.25624 0.96642 1.00866 1.02581 0.85023 0.78065 0.79462 0.76869 1.19257 1.21324 1.22055 1.19424 0.90709 0.83953 1.43042 0.90769 1.44816 1.02475 1.00842 1.86755 1.20882 0.83530 0.91727 0.97404 1.22767 0.97254 0.95289 1.00861 1.21335 0.94921 0.93638 0.97255 1.21507 0.95423 0.84865 0.95289 1.21200 0.99003 1.00864 0.91988 1.21968 0.96853 0.96021 1.02148 1.22115 1.05153 0.96765 0.77476 1.48282 1.19973 1.56823 1.08636 1.21347 0.83998 0.77812 0.86907 1.90673 1.78665 1.61407 1.16704 1.21422 0.92098 0.98273 1.00084 1.21435 0.99755 0.92126 1.00968 1.22154 0.93442 1.03115 0.98674 1.21944 0.99332 0.91246 0.83179 1.92772 1.93547 1.79717 1.55764 1.22143 0.97319 0.95333 1.02892 1.21303 0.94501 1.00662 0.97919 1.21289 0.87958 0.91895 0.97655 0.94377 0.98493 0.96466 0.92005 0.88932 0.94460 0.99421 0.89425 0.94133 0.87908 0.93596 0.88271 0.86840 0.85808 0.93598 0.88875 0.86696 0.89317 0.87148 0.87211 0.90647 0.92784 0.93547 0.92183 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.55 10.30 21.65 0.22 -58.33 16 2 C -0.06 -3.77 5.49 84.86 0.47 -3.31 16 3 Si 0.98 47.14 29.55 68.60 2.03 49.16 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 7 C -0.24 -14.24 10.28 84.04 0.86 -13.37 16 8 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.62 -33.67 3.39 -692.74 -2.35 -36.02 16 10 C 0.19 9.72 5.02 86.77 0.44 10.15 16 11 C -0.12 -4.59 5.92 31.63 0.19 -4.40 16 12 C -0.07 -2.35 0.55 -51.84 -0.03 -2.38 16 13 C 0.15 6.88 5.96 86.54 0.52 7.40 16 14 C -0.09 -2.61 4.64 30.35 0.14 -2.46 16 15 C -0.13 -2.77 5.91 30.72 0.18 -2.59 16 16 C 0.11 1.63 5.93 86.36 0.51 2.15 16 17 N -0.61 -14.82 2.87 -820.29 -2.35 -17.17 16 18 C 0.51 14.24 6.83 87.66 0.60 14.84 16 19 O -0.59 -23.04 15.49 -3.03 -0.05 -23.09 16 20 C -0.10 -1.79 1.69 -11.54 -0.02 -1.81 16 21 C -0.10 -1.46 5.02 30.60 0.15 -1.31 16 22 C -0.14 -1.11 5.72 30.59 0.17 -0.93 16 23 C 0.08 0.92 4.12 30.59 0.13 1.05 16 24 F -0.24 -4.88 16.04 44.97 0.72 -4.16 16 25 C -0.14 -1.80 5.72 30.58 0.17 -1.62 16 26 C -0.11 -2.24 4.58 30.58 0.14 -2.10 16 27 C 0.14 3.93 5.13 86.01 0.44 4.37 16 28 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.00 -0.19 7.50 -2.39 -0.02 -0.20 16 30 H 0.02 0.96 7.37 -2.39 -0.02 0.94 16 31 H 0.06 2.25 8.01 -2.39 -0.02 2.23 16 32 H 0.09 2.90 8.01 -2.39 -0.02 2.88 16 33 H 0.04 1.64 6.10 -2.39 -0.01 1.63 16 34 H -0.01 -0.59 7.87 -2.39 -0.02 -0.61 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.46 7.85 -2.38 -0.02 1.44 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.23 6.33 -2.39 -0.02 1.21 16 39 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.07 5.43 -2.38 -0.01 1.06 16 41 H 0.12 1.51 6.23 -2.39 -0.01 1.50 16 42 H 0.05 0.93 7.80 -2.39 -0.02 0.91 16 43 H 0.09 0.93 7.79 -2.39 -0.02 0.91 16 44 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 49 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 50 H 0.05 1.28 7.54 -2.39 -0.02 1.27 16 51 H 0.06 2.15 6.83 -2.38 -0.02 2.14 16 52 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -81.26 385.71 4.18 -77.08 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.89 Total: 8.88 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.06 Total: 3.66 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.48 Total: -111.52 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.72 Total: -4.16 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -81.26 4.18 -77.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054191233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.440 kcal (2) G-P(sol) polarization free energy of solvation -81.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds