Wall clock time and date at job start Tue Mar 31 2020 21:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00357 * 2 1 4 4 H 1.48504 * 109.47038 * 270.00106 * 3 2 1 5 5 H 1.48496 * 109.46906 * 29.99336 * 3 2 1 6 6 H 1.48491 * 109.47674 * 149.99776 * 3 2 1 7 7 C 1.38811 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00350 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.47484 * 125.65917 * 359.97016 * 9 7 2 11 11 C 1.55034 * 104.90023 * 204.02894 * 10 9 7 12 12 C 1.54497 * 101.52364 * 323.64359 * 11 10 9 13 13 C 1.47189 * 125.66291 * 179.97438 * 9 7 2 14 14 C 1.52245 * 110.25196 * 276.23523 * 12 11 10 15 15 C 1.53164 * 109.62165 * 297.03753 * 14 12 11 16 16 C 1.53188 * 109.27342 * 299.83677 * 15 14 12 17 17 N 1.46928 * 108.91838 * 55.23905 * 16 15 14 18 18 C 1.34777 * 120.70001 * 125.81128 * 17 16 15 19 19 O 1.21280 * 120.00152 * 174.91699 * 18 17 16 20 20 C 1.50705 * 120.00028 * 354.91176 * 18 17 16 21 21 F 1.39896 * 109.47264 * 311.55909 * 20 18 17 22 22 C 1.52995 * 109.47147 * 191.55569 * 20 18 17 23 23 C 1.53002 * 109.47115 * 179.97438 * 22 20 18 24 24 C 1.52995 * 109.46981 * 60.00536 * 23 22 20 25 25 C 1.53002 * 109.46981 * 299.99858 * 24 23 22 26 26 C 1.53002 * 109.47147 * 60.00243 * 25 24 23 27 27 C 1.47079 * 118.60211 * 305.82809 * 17 16 15 28 28 H 0.97004 * 119.99785 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.35609 * 322.88306 * 10 9 7 30 30 H 1.08998 * 110.35584 * 85.06892 * 10 9 7 31 31 H 1.09002 * 111.01237 * 205.58343 * 11 10 9 32 32 H 1.08999 * 111.01138 * 81.70567 * 11 10 9 33 33 H 1.08999 * 109.91251 * 59.10238 * 13 9 7 34 34 H 1.09007 * 109.90904 * 297.83255 * 13 9 7 35 35 H 1.08992 * 109.44068 * 176.99789 * 14 12 11 36 36 H 1.09000 * 109.44051 * 57.07455 * 14 12 11 37 37 H 1.08998 * 109.50574 * 59.77986 * 15 14 12 38 38 H 1.09000 * 109.49869 * 179.89718 * 15 14 12 39 39 H 1.09006 * 109.55966 * 175.07131 * 16 15 14 40 40 H 1.08997 * 109.56343 * 295.40505 * 16 15 14 41 41 H 1.08999 * 109.47467 * 300.00194 * 22 20 18 42 42 H 1.09008 * 109.47311 * 60.00193 * 22 20 18 43 43 H 1.08999 * 109.47114 * 300.00414 * 23 22 20 44 44 H 1.09002 * 109.47187 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.47541 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.47655 * 59.99656 * 24 23 22 47 47 H 1.08999 * 109.47213 * 300.00181 * 25 24 23 48 48 H 1.09001 * 109.47304 * 180.02562 * 25 24 23 49 49 H 1.09002 * 109.47187 * 179.97438 * 26 25 24 50 50 H 1.08999 * 109.47114 * 59.99878 * 26 25 24 51 51 H 1.08997 * 109.58187 * 172.24960 * 27 17 16 52 52 H 1.09001 * 109.57610 * 292.64601 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1422 -2.5335 0.0006 11 6 -0.4039 -3.9345 0.6107 12 6 0.7806 -4.7458 0.0400 13 6 1.9320 -3.7291 0.0005 14 6 0.4525 -5.2429 -1.3611 15 6 -0.7431 -6.1982 -1.3011 16 6 -0.3920 -7.3922 -0.4079 17 7 0.0330 -6.8943 0.9075 18 6 -0.5604 -7.3349 2.0346 19 8 -0.1395 -6.9866 3.1174 20 6 -1.7469 -8.2601 1.9494 21 9 -2.6731 -7.7477 1.0347 22 6 -2.4019 -8.3777 3.3270 23 6 -3.6069 -9.3166 3.2403 24 6 -3.1439 -10.6990 2.7762 25 6 -2.4888 -10.5814 1.3985 26 6 -1.2838 -9.6426 1.4852 27 6 1.1195 -5.9048 0.9684 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5998 -1.7600 0.6174 30 1 -0.5282 -2.4834 -1.0175 31 1 -1.3561 -4.3387 0.2671 32 1 -0.3657 -3.9001 1.6994 33 1 2.5645 -3.8505 0.8799 34 1 2.5210 -3.8702 -0.9058 35 1 1.3156 -5.7671 -1.7714 36 1 0.2069 -4.3938 -1.9990 37 1 -1.6060 -5.6759 -0.8879 38 1 -0.9774 -6.5514 -2.3053 39 1 -1.2679 -8.0305 -0.2910 40 1 0.4187 -7.9618 -0.8620 41 1 -1.6803 -8.7770 4.0396 42 1 -2.7322 -7.3929 3.6576 43 1 -4.3284 -8.9169 2.5277 44 1 -4.0739 -9.4000 4.2217 45 1 -4.0024 -11.3678 2.7140 46 1 -2.4223 -11.0987 3.4887 47 1 -3.2103 -10.1817 0.6860 48 1 -2.1593 -11.5664 1.0676 49 1 -0.8168 -9.5592 0.5038 50 1 -0.5623 -10.0423 2.1978 51 1 1.2219 -5.5372 1.9894 52 1 2.0533 -6.3676 0.6493 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054224374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:30 Heat of formation + Delta-G solvation = -85.382860 kcal Electronic energy + Delta-G solvation = -32100.884822 eV Core-core repulsion = 28013.904352 eV Total energy + Delta-G solvation = -4086.980469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -49.14284 -41.67053 -40.07662 -38.26209 -37.39010 -34.86438 -33.20196 -32.33393 -31.81043 -31.36078 -30.39662 -27.50282 -26.90750 -25.53305 -24.18547 -23.73881 -23.28050 -22.05174 -21.00168 -20.52566 -19.60106 -18.69754 -18.40678 -17.75148 -17.09603 -16.98536 -16.56646 -16.17484 -16.01972 -15.70052 -15.61806 -15.29455 -14.83380 -14.74843 -14.55386 -14.46815 -14.23326 -14.06924 -13.81947 -13.63382 -13.46709 -13.30326 -13.20134 -13.11150 -12.93453 -12.85742 -12.77959 -12.31886 -12.20924 -12.12489 -12.06022 -11.93462 -11.73278 -11.67916 -11.51184 -11.47889 -11.37975 -11.15709 -11.01208 -10.76079 -10.59011 -9.68806 -8.90861 -7.79109 -5.23650 1.28590 1.43824 1.46397 1.55104 1.78702 2.47841 3.02921 3.30049 3.33807 3.44848 3.57557 3.60460 3.64789 3.76752 3.87869 4.07612 4.11008 4.14775 4.20467 4.22348 4.28245 4.35487 4.44278 4.46735 4.50066 4.57912 4.61251 4.67135 4.74556 4.80643 4.84012 4.86196 4.89283 4.94136 4.98347 5.02681 5.12526 5.14993 5.16933 5.18936 5.29919 5.30737 5.39438 5.43826 5.45657 5.48366 5.51564 5.59630 5.78499 6.25412 6.27862 6.90214 7.08028 7.75912 8.41023 9.23069 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.002857 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.063544 B = 9799.848557 C =10071.634448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.082 0.918 9 N -0.625 5.625 10 C 0.164 3.836 11 C -0.114 4.114 12 C -0.069 4.069 13 C 0.144 3.856 14 C -0.096 4.096 15 C -0.129 4.129 16 C 0.091 3.909 17 N -0.593 5.593 18 C 0.492 3.508 19 O -0.569 6.569 20 C 0.116 3.884 21 F -0.193 7.193 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.115 4.115 26 C -0.139 4.139 27 C 0.136 3.864 28 H 0.246 0.754 29 H 0.062 0.938 30 H -0.009 1.009 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.022 0.978 34 H 0.035 0.965 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.097 0.903 50 H 0.090 0.910 51 H 0.063 0.937 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 -27.521 -0.364 28.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.100 0.900 9 N -0.351 5.351 10 C 0.039 3.961 11 C -0.153 4.153 12 C -0.070 4.070 13 C 0.019 3.981 14 C -0.133 4.133 15 C -0.166 4.166 16 C -0.030 4.030 17 N -0.323 5.323 18 C 0.279 3.721 19 O -0.448 6.448 20 C 0.094 3.906 21 F -0.173 7.173 22 C -0.163 4.163 23 C -0.155 4.155 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.177 4.177 27 C 0.013 3.987 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.009 0.991 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.108 0.892 51 H 0.082 0.918 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.513 -27.121 0.167 27.676 hybrid contribution 0.338 2.029 0.128 2.061 sum -5.175 -25.092 0.295 25.622 Atomic orbital electron populations 1.70090 1.06332 1.24947 1.58711 1.25676 0.96645 1.01131 1.02793 0.85017 0.77544 0.78876 0.77529 1.21090 1.22101 1.19410 1.19481 0.91050 0.83756 1.42422 0.90007 1.44823 1.02533 1.00949 1.86786 1.21604 0.84255 0.94057 0.96205 1.22775 0.97967 0.96470 0.98052 1.21238 0.95094 0.93784 0.96932 1.21361 0.94312 0.84433 0.98029 1.21324 0.99414 0.98858 0.93728 1.21940 0.97479 0.95945 1.01282 1.22410 1.02598 0.96808 0.81137 1.48199 1.35563 1.41416 1.07154 1.21445 0.85068 0.81698 0.83912 1.90699 1.66057 1.59045 1.28995 1.21175 0.84625 0.94179 0.90588 1.92831 1.67522 1.88790 1.68163 1.21911 0.99386 1.01365 0.93648 1.21553 0.95976 0.95262 1.02694 1.21607 1.01331 0.96070 0.96858 1.21536 0.95984 0.99752 0.97995 1.22328 1.00561 0.90822 1.03941 1.21362 0.89787 0.88066 0.99484 0.94433 0.91966 0.99113 0.90917 0.94642 0.96011 0.94715 0.89660 0.93431 0.92891 0.87743 0.87030 0.88215 0.89497 0.92601 0.91691 0.90192 0.89964 0.91203 0.91196 0.88842 0.88513 0.89155 0.91797 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 10.09 21.65 0.22 -58.78 16 2 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 3 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.24 -13.85 10.28 84.03 0.86 -12.98 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 N -0.62 -33.65 3.40 -692.47 -2.36 -36.00 16 10 C 0.16 8.62 5.57 86.89 0.48 9.10 16 11 C -0.11 -4.79 5.73 31.80 0.18 -4.60 16 12 C -0.07 -2.39 0.55 -51.93 -0.03 -2.42 16 13 C 0.14 6.10 6.43 86.47 0.56 6.66 16 14 C -0.10 -2.68 4.55 30.40 0.14 -2.54 16 15 C -0.13 -2.80 5.90 30.71 0.18 -2.62 16 16 C 0.09 1.67 4.94 86.36 0.43 2.10 16 17 N -0.59 -15.27 2.82 -820.19 -2.32 -17.59 16 18 C 0.49 13.94 6.76 87.66 0.59 14.53 16 19 O -0.57 -20.69 15.43 -3.03 -0.05 -20.74 16 20 C 0.12 2.42 0.72 -11.54 -0.01 2.41 16 21 F -0.19 -4.32 13.50 44.97 0.61 -3.71 16 22 C -0.12 -2.58 4.37 30.59 0.13 -2.45 16 23 C -0.12 -1.70 5.80 30.59 0.18 -1.52 16 24 C -0.12 -1.23 5.92 30.59 0.18 -1.05 16 25 C -0.12 -1.13 5.80 30.60 0.18 -0.95 16 26 C -0.14 -1.86 4.64 30.60 0.14 -1.72 16 27 C 0.14 4.10 4.96 86.04 0.43 4.53 16 28 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 29 H 0.06 3.78 5.88 -2.39 -0.01 3.77 16 30 H -0.01 -0.50 7.76 -2.39 -0.02 -0.52 16 31 H 0.07 2.82 6.00 -2.39 -0.01 2.80 16 32 H 0.03 1.61 7.90 -2.39 -0.02 1.59 16 33 H 0.02 0.93 7.80 -2.39 -0.02 0.91 16 34 H 0.03 1.40 7.83 -2.38 -0.02 1.38 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.61 7.49 -2.39 -0.02 1.59 16 37 H 0.05 1.40 6.22 -2.39 -0.01 1.39 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.11 1.75 3.75 -2.38 -0.01 1.74 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 1.81 7.97 -2.39 -0.02 1.79 16 42 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.06 1.01 7.80 -2.39 -0.02 1.00 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.75 7.80 -2.39 -0.02 0.73 16 48 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 49 H 0.10 1.05 5.79 -2.39 -0.01 1.03 16 50 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.06 2.34 6.91 -2.39 -0.02 2.32 16 52 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -74.05 378.97 4.13 -69.92 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.90 Total: 14.94 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 5.09 Total: 2.80 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -4.45 Total: -112.38 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.05 Total: -20.74 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.61 Total: -3.71 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -74.05 4.13 -69.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054224374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.464 kcal (2) G-P(sol) polarization free energy of solvation -74.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds