Wall clock time and date at job start Tue Mar 31 2020 21:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00278 * 2 1 4 4 H 1.48489 * 109.47031 * 239.99624 * 3 2 1 5 5 H 1.48498 * 109.46961 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47001 * 119.99247 * 3 2 1 7 7 C 1.38811 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.47136 * 125.58996 * 0.02562 * 9 7 2 11 11 C 1.54597 * 107.36670 * 180.66450 * 10 9 7 12 12 C 1.53656 * 102.73161 * 20.75459 * 11 10 9 13 13 C 1.52374 * 116.39644 * 197.07935 * 12 11 10 14 14 N 1.47894 * 85.58872 * 218.64753 * 13 12 11 15 15 C 1.34774 * 134.33987 * 203.44249 * 14 13 12 16 16 O 1.21283 * 119.99681 * 180.02562 * 15 14 13 17 17 C 1.50697 * 120.00345 * 0.06152 * 15 14 13 18 18 H 1.09001 * 109.47045 * 345.00143 * 17 15 14 19 19 F 1.39906 * 109.46893 * 105.00071 * 17 15 14 20 20 C 1.52998 * 109.47608 * 225.00297 * 17 15 14 21 21 C 1.53001 * 109.47277 * 175.00259 * 20 17 15 22 22 C 1.53006 * 109.46857 * 294.99503 * 21 20 17 23 23 C 1.52997 * 109.46628 * 180.02562 * 22 21 20 24 24 C 1.52991 * 109.47406 * 60.00508 * 23 22 21 25 25 C 1.52998 * 109.47239 * 299.99478 * 24 23 22 26 26 C 1.52998 * 109.46812 * 174.99976 * 21 20 17 27 27 C 1.47889 * 91.31509 * 23.48730 * 14 13 12 28 28 C 1.47729 * 125.58517 * 179.71795 * 9 7 2 29 29 H 0.97006 * 119.99721 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.86551 * 300.10816 * 10 9 7 31 31 H 1.08999 * 109.86401 * 61.07922 * 10 9 7 32 32 H 1.08999 * 110.75884 * 139.05990 * 11 10 9 33 33 H 1.08994 * 110.76046 * 262.26004 * 11 10 9 34 34 H 1.08995 * 113.85561 * 332.81627 * 13 12 11 35 35 H 1.09003 * 113.85353 * 104.48465 * 13 12 11 36 36 H 1.09005 * 109.46623 * 294.99974 * 20 17 15 37 37 H 1.08997 * 109.47112 * 54.99739 * 20 17 15 38 38 H 1.08998 * 109.47384 * 55.00000 * 21 20 17 39 39 H 1.09001 * 109.47045 * 300.00363 * 22 21 20 40 40 H 1.09000 * 109.46512 * 60.00509 * 22 21 20 41 41 H 1.09001 * 109.47503 * 299.99837 * 23 22 21 42 42 H 1.09002 * 109.46654 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.47365 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47755 * 59.99562 * 24 23 22 45 45 H 1.08998 * 109.47300 * 300.00614 * 25 24 23 46 46 H 1.08999 * 109.47831 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.47546 * 299.99776 * 26 21 20 48 48 H 1.09002 * 109.47824 * 59.99779 * 26 21 20 49 49 H 1.09000 * 113.85076 * 222.34692 * 27 14 13 50 50 H 1.09001 * 113.85367 * 90.67935 * 27 14 13 51 51 H 1.09007 * 110.39933 * 276.60127 * 28 9 7 52 52 H 1.08995 * 110.40116 * 39.00987 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1389 -2.5313 -0.0005 11 6 -0.4546 -4.0446 0.0170 12 6 0.8472 -4.6558 0.5580 13 6 1.0381 -6.1508 0.3337 14 7 1.6262 -6.1634 1.6906 15 6 2.4857 -6.9755 2.3372 16 8 2.8015 -6.7351 3.4833 17 6 3.0551 -8.1818 1.6360 18 1 2.4738 -8.3875 0.7371 19 9 4.3857 -7.9315 1.2838 20 6 2.9938 -9.3914 2.5708 21 6 3.4554 -10.6412 1.8186 22 6 2.4689 -10.9510 0.6908 23 6 2.9302 -12.2012 -0.0610 24 6 2.9877 -13.3855 0.9058 25 6 3.9740 -13.0758 2.0337 26 6 3.5133 -11.8258 2.7852 27 6 0.8950 -4.9309 2.0559 28 6 1.9360 -3.7333 -0.0048 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5583 -2.0551 0.8858 31 1 -0.5551 -2.0743 -0.8984 32 1 -1.2884 -4.2576 0.6859 33 1 -0.6659 -4.4069 -0.9890 34 1 0.1043 -6.7072 0.2528 35 1 1.7490 -6.3907 -0.4571 36 1 3.6457 -9.2216 3.4278 37 1 1.9695 -9.5324 2.9158 38 1 4.4456 -10.4670 1.3977 39 1 1.4787 -11.1252 1.1118 40 1 2.4278 -10.1070 0.0022 41 1 3.9205 -12.0274 -0.4820 42 1 2.2277 -12.4216 -0.8648 43 1 3.3159 -14.2763 0.3702 44 1 1.9974 -13.5594 1.3268 45 1 4.9643 -12.9019 1.6128 46 1 4.0147 -13.9194 2.7228 47 1 4.2159 -11.6052 3.5887 48 1 2.5231 -12.0001 3.2062 49 1 1.4935 -4.2133 2.6170 50 1 -0.0826 -5.1142 2.5018 51 1 2.1960 -4.0285 -1.0215 52 1 2.8183 -3.7526 0.6347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073129113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:26 Heat of formation + Delta-G solvation = -67.795845 kcal Electronic energy + Delta-G solvation = -30252.271439 eV Core-core repulsion = 26166.053600 eV Total energy + Delta-G solvation = -4086.217839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.98021 -41.83065 -39.88927 -39.36436 -37.29235 -34.55554 -34.13056 -31.71801 -31.54816 -30.55257 -29.42391 -27.68873 -27.38202 -25.74362 -24.72507 -23.43435 -22.14996 -21.84262 -20.76802 -20.52284 -19.63847 -18.92090 -18.45471 -17.81444 -17.19364 -16.81367 -16.52649 -16.30288 -16.11733 -16.03028 -15.57331 -15.15154 -15.00683 -14.76646 -14.70660 -14.64143 -14.21177 -13.90532 -13.74465 -13.68566 -13.37394 -13.24382 -13.13108 -12.95710 -12.86259 -12.79930 -12.61561 -12.46609 -12.14392 -12.07892 -11.96380 -11.95072 -11.81978 -11.73394 -11.68157 -11.30683 -11.30096 -10.98373 -10.79875 -10.71743 -10.65264 -9.84228 -8.88860 -7.85917 -5.20446 1.27239 1.43851 1.46506 1.52713 1.55630 2.47756 2.99595 3.26546 3.37437 3.39196 3.56586 3.63823 3.71666 3.74547 3.87900 3.98620 4.01629 4.09558 4.16931 4.30549 4.35734 4.45207 4.48239 4.53661 4.60044 4.62776 4.63903 4.67830 4.69837 4.76114 4.79692 4.80788 4.86313 4.97412 4.99982 5.05683 5.08843 5.13487 5.21470 5.23249 5.31000 5.33303 5.35538 5.43384 5.44064 5.50122 5.64218 5.73400 5.81737 6.21201 6.53363 6.83967 7.11573 7.77879 8.40582 9.23397 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.025077 B = 0.002199 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.282732 B =12730.686322 C =13008.957469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.628 5.628 10 C 0.181 3.819 11 C -0.109 4.109 12 C -0.098 4.098 13 C 0.128 3.872 14 N -0.633 5.633 15 C 0.502 3.498 16 O -0.579 6.579 17 C 0.092 3.908 18 H 0.135 0.865 19 F -0.204 7.204 20 C -0.125 4.125 21 C -0.082 4.082 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.113 4.113 27 C 0.123 3.877 28 C 0.157 3.843 29 H 0.247 0.753 30 H 0.008 0.992 31 H 0.010 0.990 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.047 0.953 50 H 0.113 0.887 51 H 0.039 0.961 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -29.262 -0.826 29.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.354 5.354 10 C 0.056 3.944 11 C -0.147 4.147 12 C -0.100 4.100 13 C 0.007 3.993 14 N -0.367 5.367 15 C 0.291 3.709 16 O -0.459 6.459 17 C 0.053 3.947 18 H 0.152 0.848 19 F -0.185 7.185 20 C -0.163 4.163 21 C -0.101 4.101 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.150 4.150 27 C 0.001 3.999 28 C 0.032 3.968 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.028 0.972 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.157 0.843 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.130 0.870 51 H 0.056 0.944 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.598 -29.040 -0.139 29.047 hybrid contribution 0.787 1.864 0.368 2.056 sum 1.385 -27.176 0.228 27.213 Atomic orbital electron populations 1.70161 1.05967 1.25286 1.58086 1.25575 0.96673 1.00721 1.02640 0.85220 0.77253 0.79212 0.78066 1.20263 1.21708 1.20882 1.19328 0.90729 0.84054 1.43226 0.90875 1.44848 1.02801 1.00688 1.87075 1.21035 0.83035 0.92517 0.97774 1.22516 0.95545 0.94225 1.02430 1.22284 0.97584 0.95293 0.94838 1.23443 1.00194 0.93028 0.82656 1.50432 1.42788 1.26242 1.17284 1.21330 0.79298 0.84159 0.86137 1.90698 1.61393 1.74014 1.19769 1.21793 0.79164 0.92533 1.01168 0.84778 1.92855 1.36913 1.95434 1.93287 1.22081 1.04323 0.92151 0.97768 1.21122 0.99887 0.92889 0.96180 1.21708 0.98851 0.98320 0.96752 1.21523 1.01550 0.94614 0.98004 1.21544 0.99667 0.97979 0.96499 1.21521 0.99100 0.97295 0.97746 1.21541 1.01881 0.94191 0.97410 1.23052 0.96471 0.83755 0.96665 1.21196 0.93787 0.84518 0.97325 0.94351 0.97385 0.97203 0.88862 0.88810 0.84337 0.87599 0.91550 0.88699 0.91490 0.90811 0.91324 0.92441 0.91053 0.91646 0.91678 0.92418 0.91475 0.92495 0.91313 0.93409 0.86961 0.94369 0.96247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.61 10.30 21.65 0.22 -56.39 16 2 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 3 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.24 -13.93 10.28 84.03 0.86 -13.06 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.63 -31.83 3.41 -693.33 -2.36 -34.19 16 10 C 0.18 8.43 5.39 86.80 0.47 8.89 16 11 C -0.11 -3.23 6.36 31.36 0.20 -3.03 16 12 C -0.10 -2.84 0.99 -52.16 -0.05 -2.89 16 13 C 0.13 2.36 7.53 85.90 0.65 3.00 16 14 N -0.63 -16.75 3.62 -863.60 -3.12 -19.88 16 15 C 0.50 14.79 7.40 87.66 0.65 15.44 16 16 O -0.58 -22.51 17.33 -3.04 -0.05 -22.57 16 17 C 0.09 1.95 3.56 29.85 0.11 2.06 16 18 H 0.13 1.85 5.68 -2.39 -0.01 1.84 16 19 F -0.20 -5.45 16.66 44.97 0.75 -4.70 16 20 C -0.13 -2.26 4.16 30.59 0.13 -2.13 16 21 C -0.08 -1.15 2.15 -10.79 -0.02 -1.18 16 22 C -0.12 -1.25 4.97 30.59 0.15 -1.10 16 23 C -0.12 -1.18 5.92 30.59 0.18 -0.99 16 24 C -0.12 -1.13 5.92 30.59 0.18 -0.95 16 25 C -0.12 -1.29 5.92 30.58 0.18 -1.11 16 26 C -0.11 -1.42 5.20 30.58 0.16 -1.26 16 27 C 0.12 3.70 8.14 85.91 0.70 4.40 16 28 C 0.16 6.19 6.63 86.28 0.57 6.76 16 29 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 30 H 0.01 0.42 7.40 -2.38 -0.02 0.40 16 31 H 0.01 0.51 7.47 -2.39 -0.02 0.49 16 32 H 0.09 2.30 7.99 -2.39 -0.02 2.28 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.11 1.61 8.12 -2.39 -0.02 1.59 16 36 H 0.07 1.50 8.05 -2.38 -0.02 1.48 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.11 7.82 -2.39 -0.02 1.09 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.07 0.65 6.46 -2.39 -0.02 0.64 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.05 1.82 8.12 -2.39 -0.02 1.81 16 50 H 0.11 2.81 8.04 -2.39 -0.02 2.79 16 51 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 52 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 Total: -1.00 -75.76 403.42 3.91 -71.84 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.88 Total: 7.57 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.58 Total: 9.70 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -5.26 Total: -110.45 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.75 Total: -4.70 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -75.76 3.91 -71.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073129113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.046 kcal (2) G-P(sol) polarization free energy of solvation -75.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds