Wall clock time and date at job start Tue Mar 31 2020 21:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 119.99973 * 2 1 4 4 H 1.48500 * 109.47594 * 270.00401 * 3 2 1 5 5 H 1.48496 * 109.47201 * 30.00955 * 3 2 1 6 6 H 1.48502 * 109.47073 * 150.00440 * 3 2 1 7 7 C 1.38814 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00051 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99765 * 359.97438 * 7 2 1 10 10 C 1.46659 * 125.28681 * 179.97438 * 9 7 2 11 11 C 1.53512 * 107.04718 * 197.39738 * 10 9 7 12 12 H 1.09000 * 112.80442 * 211.53871 * 11 10 9 13 13 C 1.54789 * 109.68986 * 84.08985 * 11 10 9 14 14 C 1.55161 * 101.35604 * 212.75151 * 13 11 10 15 15 N 1.47340 * 104.79631 * 37.54294 * 14 13 11 16 16 C 1.34780 * 125.52672 * 156.68251 * 15 14 13 17 17 O 1.21280 * 120.00315 * 179.69399 * 16 15 14 18 18 C 1.50699 * 119.99494 * 359.69296 * 16 15 14 19 19 H 1.08997 * 109.47516 * 14.99557 * 18 16 15 20 20 F 1.39901 * 109.47423 * 254.99690 * 18 16 15 21 21 C 1.53006 * 109.47053 * 135.00090 * 18 16 15 22 22 C 1.52997 * 109.47127 * 184.99965 * 21 18 16 23 23 C 1.53000 * 109.47060 * 294.99938 * 22 21 18 24 24 C 1.53002 * 109.47379 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.46964 * 59.99681 * 24 23 22 26 26 C 1.53000 * 109.47333 * 300.00347 * 25 24 23 27 27 C 1.53001 * 109.47049 * 174.99763 * 22 21 18 28 28 C 1.47253 * 108.95447 * 336.41899 * 15 14 13 29 29 H 1.09003 * 111.94739 * 235.83585 * 28 15 14 30 30 C 1.46493 * 125.29249 * 359.97438 * 9 7 2 31 31 H 0.97003 * 120.00337 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.91518 * 316.74694 * 10 9 7 33 33 H 1.09003 * 109.91510 * 78.04705 * 10 9 7 34 34 H 1.08998 * 111.02658 * 330.96371 * 13 11 10 35 35 H 1.08999 * 111.03116 * 94.83549 * 13 11 10 36 36 H 1.08995 * 110.48325 * 278.67664 * 14 13 11 37 37 H 1.09010 * 110.31998 * 156.32301 * 14 13 11 38 38 H 1.09001 * 109.47002 * 304.99539 * 21 18 16 39 39 H 1.08993 * 109.46955 * 64.99976 * 21 18 16 40 40 H 1.09006 * 109.47500 * 54.99635 * 22 21 18 41 41 H 1.08998 * 109.46849 * 299.99880 * 23 22 21 42 42 H 1.09000 * 109.47227 * 59.99725 * 23 22 21 43 43 H 1.08998 * 109.46869 * 300.00504 * 24 23 22 44 44 H 1.08996 * 109.47485 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.47455 * 180.02562 * 25 24 23 46 46 H 1.08998 * 109.47250 * 60.00220 * 25 24 23 47 47 H 1.09010 * 109.47171 * 299.99962 * 26 25 24 48 48 H 1.09000 * 109.47227 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.47252 * 299.99805 * 27 22 21 50 50 H 1.08998 * 109.47250 * 59.99881 * 27 22 21 51 51 H 1.08997 * 109.71436 * 58.29724 * 30 9 7 52 52 H 1.09002 * 109.67241 * 297.72994 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9386 -3.7203 -0.0016 11 6 0.8541 -4.7144 -0.4400 12 1 0.9732 -5.6976 0.0153 13 6 0.7802 -4.7575 -1.9856 14 6 -0.7307 -5.0286 -2.2118 15 7 -1.4139 -4.2472 -1.1660 16 6 -2.6891 -3.8142 -1.2192 17 8 -3.1535 -3.1806 -0.2951 18 6 -3.5380 -4.1174 -2.4269 19 1 -3.0624 -4.9000 -3.0181 20 9 -3.6723 -2.9622 -3.2045 21 6 -4.9205 -4.5901 -1.9728 22 6 -5.7398 -5.0162 -3.1927 23 6 -6.0002 -3.7992 -4.0826 24 6 -6.8201 -4.2251 -5.3021 25 6 -8.1545 -4.8135 -4.8394 26 6 -7.8941 -6.0305 -3.9495 27 6 -7.0743 -5.6050 -2.7304 28 6 -0.4795 -4.0213 -0.0505 29 1 -0.8822 -4.3793 0.8970 30 6 -0.1332 -2.5231 0.0005 31 1 -0.4851 0.8400 0.0004 32 1 2.7713 -3.7453 -0.7045 33 1 2.2874 -3.9693 1.0006 34 1 1.0788 -3.8027 -2.4182 35 1 1.3863 -5.5714 -2.3836 36 1 -0.9494 -6.0901 -2.0957 37 1 -1.0332 -4.6843 -3.2009 38 1 -4.8106 -5.4368 -1.2953 39 1 -5.4316 -3.7767 -1.4580 40 1 -5.1874 -5.7675 -3.7572 41 1 -6.5527 -3.0480 -3.5182 42 1 -5.0496 -3.3798 -4.4118 43 1 -6.2680 -4.9766 -5.8666 44 1 -7.0060 -3.3580 -5.9359 45 1 -8.7385 -5.1174 -5.7082 46 1 -8.7066 -4.0621 -4.2748 47 1 -7.3420 -6.7820 -4.5140 48 1 -8.8448 -6.4499 -3.6202 49 1 -6.8887 -6.4720 -2.0965 50 1 -7.6268 -4.8538 -2.1660 51 1 -0.5497 -2.0197 -0.8719 52 1 -0.5419 -2.0818 0.9096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076464685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:33 Heat of formation + Delta-G solvation = -93.597147 kcal Electronic energy + Delta-G solvation = -31153.841232 eV Core-core repulsion = 27066.504564 eV Total energy + Delta-G solvation = -4087.336667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.07997 -41.52964 -39.68692 -39.24349 -36.68085 -34.55393 -34.07973 -32.27854 -31.57136 -30.97778 -29.84540 -28.31921 -26.59319 -25.41267 -23.78567 -23.41241 -22.46696 -21.84529 -21.03303 -20.67982 -20.17647 -19.03451 -18.65507 -17.64145 -17.28563 -17.02128 -16.53828 -16.19521 -16.00672 -15.49332 -15.35540 -15.27309 -15.01890 -14.98660 -14.60706 -14.54567 -14.20516 -13.97063 -13.71964 -13.60749 -13.36728 -13.27584 -12.99642 -12.85525 -12.77155 -12.73238 -12.63075 -12.52952 -12.30311 -12.14875 -11.94187 -11.89518 -11.84022 -11.72491 -11.52247 -11.46237 -11.30458 -11.13438 -10.85167 -10.75702 -10.51999 -9.71734 -8.93167 -7.86707 -5.26150 1.33635 1.39835 1.43149 1.52167 1.80261 2.45702 3.13017 3.30059 3.40847 3.55517 3.58302 3.63522 3.72832 3.75188 3.90014 3.95836 4.00097 4.07651 4.30241 4.34709 4.35728 4.46452 4.48269 4.49985 4.54813 4.61093 4.66944 4.69080 4.69971 4.81572 4.85010 4.89412 4.94856 4.98436 5.07804 5.09376 5.16401 5.18557 5.23709 5.31438 5.33251 5.35648 5.42314 5.46032 5.50079 5.52943 5.53954 5.64469 5.75942 6.15867 6.44929 6.97839 7.05481 7.76090 8.36635 9.20990 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.002879 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.867130 B = 9721.621643 C =10657.950320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.074 4.074 3 Si 0.981 3.019 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.261 1.261 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.623 5.623 10 C 0.134 3.866 11 C -0.089 4.089 12 H 0.140 0.860 13 C -0.114 4.114 14 C 0.091 3.909 15 N -0.602 5.602 16 C 0.490 3.510 17 O -0.572 6.572 18 C 0.094 3.906 19 H 0.141 0.859 20 F -0.200 7.200 21 C -0.126 4.126 22 C -0.076 4.076 23 C -0.136 4.136 24 C -0.116 4.116 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.113 4.113 28 C 0.115 3.885 29 H 0.078 0.922 30 C 0.199 3.801 31 H 0.241 0.759 32 H 0.054 0.946 33 H 0.024 0.976 34 H 0.046 0.954 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.049 0.951 51 H 0.007 0.993 52 H -0.020 1.020 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 -21.121 -11.775 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.267 4.267 3 Si 0.809 3.191 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.185 1.185 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.350 5.350 10 C 0.009 3.991 11 C -0.108 4.108 12 H 0.158 0.842 13 C -0.152 4.152 14 C -0.030 4.030 15 N -0.335 5.335 16 C 0.277 3.723 17 O -0.451 6.451 18 C 0.055 3.945 19 H 0.159 0.841 20 F -0.181 7.181 21 C -0.164 4.164 22 C -0.094 4.094 23 C -0.174 4.174 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.152 4.152 27 C -0.151 4.151 28 C 0.010 3.990 29 H 0.096 0.904 30 C 0.073 3.927 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.148 0.852 36 H 0.138 0.862 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.068 0.932 51 H 0.025 0.975 52 H -0.002 1.002 Dipole moment (debyes) X Y Z Total from point charges -10.292 -20.534 -11.316 25.605 hybrid contribution 0.124 2.290 0.629 2.378 sum -10.168 -18.245 -10.687 23.462 Atomic orbital electron populations 1.70322 1.06686 1.24891 1.58261 1.25813 0.96458 1.01667 1.02733 0.85036 0.77701 0.78796 0.77571 1.21059 1.22760 1.18532 1.19505 0.91173 0.83489 1.42807 0.89061 1.44446 1.01725 1.01816 1.86994 1.21390 0.95484 0.83829 0.98374 1.23037 0.90790 0.99379 0.97638 0.84205 1.22794 0.95514 1.03105 0.93749 1.22872 0.92201 0.97199 0.90686 1.48801 1.10306 1.53623 1.20748 1.21466 0.81953 0.79271 0.89633 1.90732 1.73011 1.40482 1.40846 1.21844 0.98133 0.85793 0.88699 0.84145 1.92781 1.96712 1.53486 1.75109 1.22102 0.92000 1.02424 0.99867 1.21138 0.96303 0.97777 0.94167 1.21975 1.01092 0.97350 0.96938 1.21519 0.96269 1.00650 0.96882 1.21568 0.96976 0.97730 0.99639 1.21498 1.00086 0.97589 0.96006 1.21558 0.94887 1.00530 0.98120 1.22689 0.90189 0.96049 0.90072 0.90431 1.20784 0.84148 0.91083 0.96687 0.95012 0.92742 0.95838 0.93489 0.85225 0.86217 0.89505 0.88340 0.92404 0.88691 0.94059 0.91015 0.90975 0.92501 0.91164 0.93112 0.90894 0.91340 0.90732 0.93196 0.97475 1.00180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.33 10.23 21.65 0.22 -63.11 16 2 C -0.07 -4.50 5.48 84.86 0.47 -4.03 16 3 Si 0.98 48.38 29.55 68.60 2.03 50.40 16 4 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 5 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 6 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.24 -13.96 10.25 84.03 0.86 -13.10 16 8 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 9 N -0.62 -33.06 3.37 -698.95 -2.36 -35.42 16 10 C 0.13 5.14 6.50 86.52 0.56 5.71 16 11 C -0.09 -2.58 3.97 -9.23 -0.04 -2.62 16 12 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 13 C -0.11 -2.71 6.34 31.95 0.20 -2.51 16 14 C 0.09 1.93 6.23 86.96 0.54 2.47 16 15 N -0.60 -20.31 2.83 -783.82 -2.22 -22.53 16 16 C 0.49 18.37 6.90 87.66 0.61 18.98 16 17 O -0.57 -28.07 16.69 -3.03 -0.05 -28.12 16 18 C 0.09 2.52 3.38 29.85 0.10 2.62 16 19 H 0.14 2.43 6.49 -2.39 -0.02 2.41 16 20 F -0.20 -6.63 13.88 44.97 0.62 -6.01 16 21 C -0.13 -2.88 4.27 30.60 0.13 -2.75 16 22 C -0.08 -1.30 2.19 -10.79 -0.02 -1.32 16 23 C -0.14 -2.80 4.65 30.60 0.14 -2.66 16 24 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 25 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 26 C -0.11 -1.41 5.92 30.58 0.18 -1.23 16 27 C -0.11 -1.71 5.20 30.58 0.16 -1.55 16 28 C 0.11 4.49 3.81 45.91 0.17 4.67 16 29 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 30 C 0.20 10.92 4.63 86.67 0.40 11.32 16 31 H 0.24 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.05 1.94 7.95 -2.39 -0.02 1.92 16 33 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 1.53 7.93 -2.39 -0.02 1.51 16 35 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.64 7.27 -2.38 -0.02 1.62 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 40 H 0.09 1.23 8.14 -2.38 -0.02 1.22 16 41 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.69 5.43 -2.39 -0.01 1.68 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.01 0.45 6.88 -2.39 -0.02 0.43 16 52 H -0.02 -1.32 7.51 -2.39 -0.02 -1.34 16 Total: -1.00 -85.85 393.38 3.96 -81.89 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.88 Total: 12.10 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 4.83 Total: 10.79 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -4.35 Total: -121.05 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.05 Total: -28.12 kcal Atomic # 9 Polarization: -6.63 SS G_CDS: 0.62 Total: -6.01 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.40 kcal Total: -85.85 3.96 -81.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076464685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.704 kcal (2) G-P(sol) polarization free energy of solvation -85.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds