Wall clock time and date at job start Tue Mar 31 2020 21:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99893 * 2 1 4 4 H 1.48500 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47573 * 300.00410 * 3 2 1 6 6 H 1.48503 * 109.46993 * 60.00720 * 3 2 1 7 7 C 1.38815 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99859 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.46654 * 125.28918 * 179.97438 * 9 7 2 11 11 C 1.53515 * 107.04931 * 197.40002 * 10 9 7 12 12 H 1.09006 * 112.80286 * 211.53517 * 11 10 9 13 13 C 1.54790 * 109.68603 * 84.82807 * 11 10 9 14 14 C 1.55859 * 100.96606 * 213.32943 * 13 11 10 15 15 N 1.47346 * 105.31252 * 36.45009 * 14 13 11 16 16 C 1.34779 * 125.51659 * 157.14168 * 15 14 13 17 17 O 1.21284 * 119.99465 * 180.02562 * 16 15 14 18 18 C 1.50697 * 120.00312 * 0.03147 * 16 15 14 19 19 H 1.08990 * 109.47464 * 344.99349 * 18 16 15 20 20 F 1.39903 * 109.47425 * 104.99536 * 18 16 15 21 21 C 1.53009 * 109.46847 * 224.99430 * 18 16 15 22 22 C 1.52998 * 109.46715 * 174.99929 * 21 18 16 23 23 C 1.53002 * 109.47232 * 294.99638 * 22 21 18 24 24 C 1.52999 * 109.46830 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47367 * 60.00583 * 24 23 22 26 26 C 1.52998 * 109.46759 * 299.99874 * 25 24 23 27 27 C 1.53000 * 109.47577 * 59.99763 * 26 25 24 28 28 C 1.47250 * 108.95815 * 337.16470 * 15 14 13 29 29 H 1.08996 * 112.73273 * 236.15165 * 28 15 14 30 30 C 1.46495 * 125.29001 * 359.97280 * 9 7 2 31 31 H 0.97007 * 120.00007 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.91349 * 316.75402 * 10 9 7 33 33 H 1.09000 * 109.91749 * 78.04739 * 10 9 7 34 34 H 1.09001 * 111.02555 * 330.96624 * 13 11 10 35 35 H 1.09005 * 111.02956 * 94.87652 * 13 11 10 36 36 H 1.09000 * 109.79504 * 277.64380 * 14 13 11 37 37 H 1.09001 * 110.60216 * 155.67159 * 14 13 11 38 38 H 1.09002 * 109.46891 * 294.99758 * 21 18 16 39 39 H 1.09003 * 109.46850 * 54.99613 * 21 18 16 40 40 H 1.08995 * 109.47480 * 55.00650 * 22 21 18 41 41 H 1.08997 * 109.47110 * 300.00429 * 23 22 21 42 42 H 1.09000 * 109.46819 * 60.00400 * 23 22 21 43 43 H 1.08997 * 109.47326 * 299.99931 * 24 23 22 44 44 H 1.09009 * 109.46813 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47198 * 179.97438 * 25 24 23 46 46 H 1.09004 * 109.46648 * 59.99693 * 25 24 23 47 47 H 1.09007 * 109.46788 * 299.99803 * 26 25 24 48 48 H 1.09000 * 109.46909 * 180.02562 * 26 25 24 49 49 H 1.08996 * 109.47501 * 179.97438 * 27 26 25 50 50 H 1.09007 * 109.46694 * 59.99758 * 27 26 25 51 51 H 1.09002 * 109.71712 * 297.74979 * 30 9 7 52 52 H 1.09001 * 109.71175 * 58.34765 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9386 -3.7203 -0.0016 11 6 0.8541 -4.7144 -0.4401 12 1 0.9732 -5.6976 0.0152 13 6 0.7930 -4.7713 -1.9858 14 6 -0.7279 -5.0248 -2.2133 15 7 -1.4129 -4.2483 -1.1651 16 6 -2.6881 -3.8153 -1.2186 17 8 -3.1523 -3.1809 -0.2950 18 6 -3.5372 -4.1196 -2.4258 19 1 -2.8989 -4.4508 -3.2448 20 9 -4.4523 -5.1296 -2.1099 21 6 -4.2947 -2.8588 -2.8474 22 6 -5.0589 -3.1327 -4.1442 23 6 -4.0643 -3.4044 -5.2747 24 6 -4.8287 -3.6777 -6.5716 25 6 -5.6835 -2.4594 -6.9263 26 6 -6.6780 -2.1877 -5.7958 27 6 -5.9138 -1.9144 -4.4989 28 6 -0.4784 -4.0216 -0.0499 29 1 -0.8641 -4.3837 0.9031 30 6 -0.1332 -2.5230 0.0006 31 1 -0.4850 0.8401 0.0004 32 1 2.7713 -3.7452 -0.7044 33 1 2.2874 -3.9694 1.0006 34 1 1.0989 -3.8215 -2.4244 35 1 1.3989 -5.5914 -2.3712 36 1 -0.9457 -6.0870 -2.1018 37 1 -1.0309 -4.6780 -3.2012 38 1 -4.9981 -2.5783 -2.0634 39 1 -3.5863 -2.0459 -3.0078 40 1 -5.7027 -4.0019 -4.0099 41 1 -3.4206 -2.5351 -5.4090 42 1 -3.4551 -4.2721 -5.0218 43 1 -5.4726 -4.5468 -6.4376 44 1 -4.1201 -3.8717 -7.3769 45 1 -6.2277 -2.6540 -7.8505 46 1 -5.0394 -1.5903 -7.0604 47 1 -7.3220 -3.0569 -5.6618 48 1 -7.2873 -1.3200 -6.0487 49 1 -6.6223 -1.7203 -3.6936 50 1 -5.2697 -1.0452 -4.6330 51 1 -0.5427 -2.0816 0.9092 52 1 -0.5496 -2.0203 -0.8724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076464686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:36 Heat of formation + Delta-G solvation = -96.692770 kcal Electronic energy + Delta-G solvation = -31349.240259 eV Core-core repulsion = 27261.769355 eV Total energy + Delta-G solvation = -4087.470904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -48.99944 -41.53992 -39.78435 -39.25447 -36.67351 -34.61274 -34.08629 -32.27690 -31.66512 -30.91366 -29.77888 -28.32518 -26.60224 -25.56483 -23.93554 -23.38862 -22.44910 -21.85200 -20.99005 -20.65313 -20.22370 -19.03331 -18.60034 -17.85137 -17.14943 -16.92398 -16.45668 -16.26792 -16.17220 -15.50234 -15.36196 -15.15674 -15.11089 -14.95995 -14.76492 -14.57808 -14.21985 -13.96252 -13.74173 -13.46217 -13.37104 -13.25309 -13.15755 -12.99540 -12.91904 -12.76670 -12.70932 -12.56728 -12.25809 -12.07830 -11.98490 -11.88301 -11.84026 -11.77288 -11.53220 -11.45524 -11.34033 -11.02373 -10.83250 -10.81563 -10.71862 -9.73964 -8.91974 -7.85682 -5.24762 1.33000 1.41869 1.43643 1.54197 1.73773 2.46721 3.09879 3.31408 3.32842 3.47279 3.53444 3.61229 3.67162 3.74766 3.85241 3.93350 3.98965 4.03004 4.27652 4.32756 4.34215 4.43390 4.45366 4.47539 4.53679 4.56693 4.61743 4.65858 4.68308 4.76020 4.82037 4.85281 4.93763 4.97042 5.06202 5.07045 5.15871 5.17706 5.18545 5.28346 5.30661 5.32761 5.39773 5.43864 5.46675 5.49312 5.53646 5.61833 5.76253 6.16933 6.41859 6.94726 7.06599 7.76726 8.37662 9.22482 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011319 B = 0.003457 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.031328 B = 8098.267443 C = 9339.902112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.258 1.258 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.239 4.239 8 H 0.091 0.909 9 N -0.622 5.622 10 C 0.135 3.865 11 C -0.093 4.093 12 H 0.134 0.866 13 C -0.110 4.110 14 C 0.089 3.911 15 N -0.600 5.600 16 C 0.490 3.510 17 O -0.571 6.571 18 C 0.100 3.900 19 H 0.136 0.864 20 F -0.194 7.194 21 C -0.131 4.131 22 C -0.076 4.076 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.117 4.117 28 C 0.113 3.887 29 H 0.073 0.927 30 C 0.202 3.798 31 H 0.242 0.758 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.053 0.947 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.055 0.945 51 H -0.020 1.020 52 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 -14.681 -15.760 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.368 4.368 8 H 0.109 0.891 9 N -0.349 5.349 10 C 0.011 3.989 11 C -0.113 4.113 12 H 0.151 0.849 13 C -0.148 4.148 14 C -0.031 4.031 15 N -0.333 5.333 16 C 0.277 3.723 17 O -0.450 6.450 18 C 0.061 3.939 19 H 0.153 0.847 20 F -0.175 7.175 21 C -0.169 4.169 22 C -0.095 4.095 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.153 4.153 27 C -0.155 4.155 28 C 0.008 3.992 29 H 0.091 0.909 30 C 0.076 3.924 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.073 0.927 51 H -0.002 1.002 52 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.372 -14.161 -15.280 22.099 hybrid contribution 0.045 1.754 0.987 2.013 sum -7.327 -12.407 -14.293 20.296 Atomic orbital electron populations 1.70311 1.06597 1.24857 1.58339 1.25747 0.96429 1.01422 1.02682 0.85005 0.78501 0.79340 0.76484 1.18147 1.21982 1.22477 1.19529 0.91150 0.83431 1.42711 0.89146 1.44444 1.01717 1.01746 1.86995 1.21368 0.95407 0.83852 0.98320 1.23023 0.90999 0.99251 0.97995 0.84851 1.22923 0.94955 1.03469 0.93463 1.22954 0.92493 0.96923 0.90762 1.48738 1.10456 1.53456 1.20621 1.21387 0.82106 0.79360 0.89405 1.90734 1.72898 1.40700 1.40619 1.21670 0.89170 0.88378 0.94707 0.84690 1.92844 1.68464 1.61665 1.94519 1.22087 1.00041 0.95270 0.99488 1.21098 0.96883 0.99341 0.92154 1.21726 0.97572 1.01890 0.94715 1.21505 0.98884 0.98219 0.96617 1.21565 0.97833 0.98306 0.98176 1.21508 0.97778 1.01902 0.94083 1.21579 0.98513 0.97170 0.98195 1.22645 0.90046 0.96490 0.89993 0.90937 1.20762 0.84134 0.90580 0.96960 0.94903 0.92534 0.96076 0.92765 0.85212 0.87493 0.88692 0.91653 0.91045 0.90107 0.92319 0.90922 0.91355 0.90948 0.90945 0.92574 0.91448 0.91576 0.92412 0.92652 1.00156 0.96793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.33 10.23 21.65 0.22 -61.11 16 2 C -0.07 -4.14 5.48 84.86 0.47 -3.67 16 3 Si 0.98 47.15 29.55 68.60 2.03 49.18 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 7 C -0.24 -13.56 10.25 84.03 0.86 -12.70 16 8 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 9 N -0.62 -32.33 3.37 -698.95 -2.36 -34.69 16 10 C 0.14 5.15 6.51 86.52 0.56 5.71 16 11 C -0.09 -2.74 3.92 -9.27 -0.04 -2.77 16 12 H 0.13 2.84 8.14 -2.38 -0.02 2.82 16 13 C -0.11 -2.57 6.43 32.19 0.21 -2.36 16 14 C 0.09 1.95 6.54 87.21 0.57 2.52 16 15 N -0.60 -20.59 2.83 -782.60 -2.22 -22.81 16 16 C 0.49 18.74 6.90 87.66 0.61 19.34 16 17 O -0.57 -28.25 16.69 -3.04 -0.05 -28.30 16 18 C 0.10 2.76 3.41 29.85 0.10 2.86 16 19 H 0.14 2.71 4.32 -2.39 -0.01 2.70 16 20 F -0.19 -5.53 16.66 44.97 0.75 -4.78 16 21 C -0.13 -3.64 4.16 30.60 0.13 -3.51 16 22 C -0.08 -1.56 2.15 -10.79 -0.02 -1.59 16 23 C -0.12 -2.07 4.97 30.59 0.15 -1.91 16 24 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 25 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 26 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 27 C -0.12 -2.33 5.20 30.60 0.16 -2.17 16 28 C 0.11 4.47 3.81 45.88 0.17 4.65 16 29 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 30 C 0.20 10.81 4.64 86.67 0.40 11.22 16 31 H 0.24 15.33 8.31 -92.70 -0.77 14.56 16 32 H 0.06 1.98 7.94 -2.39 -0.02 1.96 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 1.66 7.93 -2.39 -0.02 1.64 16 35 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.09 1.66 6.75 -2.39 -0.02 1.65 16 38 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.08 1.61 7.81 -2.39 -0.02 1.59 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.06 6.46 -2.39 -0.02 1.04 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 47 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 51 H -0.02 -1.29 7.51 -2.39 -0.02 -1.30 16 52 H 0.01 0.85 6.88 -2.39 -0.02 0.83 16 Total: -1.00 -81.04 394.74 4.13 -76.91 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.88 Total: 14.53 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 4.87 Total: 11.07 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -4.35 Total: -118.60 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.05 Total: -28.30 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.75 Total: -4.78 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -81.04 4.13 -76.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076464686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.785 kcal (2) G-P(sol) polarization free energy of solvation -81.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds