Wall clock time and date at job start Tue Mar 31 2020 21:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99401 * 2 1 4 4 H 1.48504 * 109.46659 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47073 * 300.00008 * 3 2 1 6 6 H 1.48496 * 109.47053 * 60.00228 * 3 2 1 7 7 C 1.38805 * 120.00534 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00163 * 194.49652 * 7 2 1 9 9 N 1.36938 * 120.00033 * 14.49994 * 7 2 1 10 10 C 1.46534 * 119.73996 * 205.19209 * 9 7 2 11 11 C 1.53155 * 108.25216 * 236.39325 * 10 9 7 12 12 C 1.53065 * 109.21258 * 301.58906 * 11 10 9 13 13 H 1.08994 * 113.84231 * 275.71108 * 12 11 10 14 14 C 1.54354 * 111.56990 * 142.37466 * 12 11 10 15 15 N 1.47290 * 87.50961 * 274.17077 * 14 12 11 16 16 C 1.34771 * 136.54779 * 151.47468 * 15 14 12 17 17 O 1.21272 * 120.00490 * 179.63203 * 16 15 14 18 18 C 1.50708 * 119.99524 * 359.90279 * 16 15 14 19 19 H 1.08997 * 109.47319 * 14.72698 * 18 16 15 20 20 F 1.39897 * 109.47200 * 254.72431 * 18 16 15 21 21 C 1.53002 * 109.46483 * 134.72451 * 18 16 15 22 22 C 1.53003 * 109.46706 * 184.99795 * 21 18 16 23 23 C 1.53004 * 109.47456 * 294.99979 * 22 21 18 24 24 C 1.52994 * 109.47075 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.47220 * 60.00177 * 24 23 22 26 26 C 1.52991 * 109.47139 * 299.99757 * 25 24 23 27 27 C 1.53003 * 109.47111 * 174.99989 * 22 21 18 28 28 C 1.46465 * 86.90721 * 331.22208 * 15 14 12 29 29 H 1.09005 * 111.44209 * 277.31421 * 28 15 14 30 30 C 1.45705 * 119.73764 * 25.16476 * 9 7 2 31 31 H 0.96998 * 120.00551 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.70844 * 356.08294 * 10 9 7 33 33 H 1.08999 * 109.70973 * 116.66063 * 10 9 7 34 34 H 1.09002 * 109.51360 * 61.51121 * 11 10 9 35 35 H 1.08995 * 109.51061 * 181.66826 * 11 10 9 36 36 H 1.09002 * 113.52094 * 159.53815 * 14 12 11 37 37 H 1.09001 * 113.62619 * 28.82319 * 14 12 11 38 38 H 1.08997 * 109.47894 * 304.99842 * 21 18 16 39 39 H 1.09008 * 109.47244 * 65.00710 * 21 18 16 40 40 H 1.09001 * 109.47169 * 55.00393 * 22 21 18 41 41 H 1.08999 * 109.46790 * 300.00167 * 23 22 21 42 42 H 1.08999 * 109.46757 * 60.00035 * 23 22 21 43 43 H 1.09001 * 109.47441 * 300.00348 * 24 23 22 44 44 H 1.09002 * 109.47321 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47222 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.46774 * 59.99762 * 25 24 23 47 47 H 1.08993 * 109.47594 * 300.00241 * 26 25 24 48 48 H 1.09010 * 109.47237 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47150 * 300.00721 * 27 22 21 50 50 H 1.09001 * 109.46774 * 60.00162 * 27 22 21 51 51 H 1.08997 * 108.78961 * 19.13473 * 30 9 7 52 52 H 1.09004 * 108.78661 * 260.92151 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0646 -1.2169 0.2336 9 7 1.3585 -2.3690 -0.2980 10 6 1.8763 -3.6413 0.2123 11 6 2.1191 -4.5727 -0.9790 12 6 0.8066 -4.7666 -1.7424 13 1 0.1674 -5.5465 -1.3288 14 6 1.0407 -4.8282 -3.2669 15 7 0.9701 -3.3570 -3.2724 16 6 1.4822 -2.3557 -4.0150 17 8 1.2129 -1.2038 -3.7481 18 6 2.3848 -2.6679 -5.1808 19 1 2.3021 -3.7254 -5.4313 20 9 3.7085 -2.3719 -4.8381 21 6 1.9694 -1.8239 -6.3875 22 6 2.8030 -2.2295 -7.6047 23 6 4.2723 -1.8831 -7.3550 24 6 5.1059 -2.2893 -8.5719 25 6 4.6069 -1.5356 -9.8064 26 6 3.1378 -1.8820 -10.0562 27 6 2.3039 -1.4754 -8.8389 28 6 0.0866 -3.4742 -2.1100 29 1 -0.9419 -3.6753 -2.4099 30 6 0.1552 -2.3357 -1.1189 31 1 -0.4851 0.8400 -0.0004 32 1 2.8133 -3.4707 0.7424 33 1 1.1482 -4.0899 0.8881 34 1 2.8636 -4.1306 -1.6411 35 1 2.4772 -5.5374 -0.6197 36 1 0.2267 -5.3049 -3.8130 37 1 2.0205 -5.2179 -3.5430 38 1 0.9129 -1.9882 -6.5996 39 1 2.1362 -0.7693 -6.1680 40 1 2.7057 -3.3024 -7.7705 41 1 4.3695 -0.8102 -7.1892 42 1 4.6278 -2.4204 -6.4758 43 1 5.0085 -3.3622 -8.7373 44 1 6.1527 -2.0429 -8.3939 45 1 5.2011 -1.8247 -10.6733 46 1 4.7043 -0.4627 -9.6410 47 1 3.0404 -2.9549 -10.2215 48 1 2.7822 -1.3447 -10.9355 49 1 1.2571 -1.7220 -9.0167 50 1 2.4012 -0.4025 -8.6730 51 1 0.1287 -1.3927 -1.6650 52 1 -0.7165 -2.3854 -0.4662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084777116.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:41 Heat of formation + Delta-G solvation = -60.725886 kcal Electronic energy + Delta-G solvation = -31668.853869 eV Core-core repulsion = 27582.942607 eV Total energy + Delta-G solvation = -4085.911263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.05339 -41.91454 -39.69528 -39.13402 -37.09541 -34.50650 -34.01780 -31.96834 -31.59623 -31.32471 -29.58382 -28.58000 -25.76760 -25.53785 -24.08725 -23.46986 -22.67545 -21.99623 -21.20953 -20.64394 -19.57682 -18.95364 -17.89125 -17.69950 -17.37090 -16.92632 -16.52543 -16.12758 -15.98394 -15.62380 -15.34910 -15.11043 -15.03455 -14.82129 -14.71525 -14.61829 -14.30553 -14.13563 -13.88830 -13.63863 -13.51767 -13.18215 -12.92051 -12.80359 -12.78575 -12.71534 -12.56360 -12.42146 -12.21233 -12.20180 -12.00070 -11.96771 -11.80091 -11.76497 -11.51541 -11.33465 -11.14354 -10.95627 -10.83920 -10.62812 -10.27135 -9.60064 -8.69694 -7.88476 -5.31497 1.30993 1.38119 1.43746 1.50836 1.77835 2.44977 3.19277 3.26866 3.40541 3.41261 3.59718 3.69500 3.71543 3.84393 3.92275 3.96838 4.05475 4.19067 4.32519 4.42835 4.44674 4.46137 4.49847 4.57361 4.58124 4.64319 4.66873 4.68330 4.74624 4.78379 4.80092 4.87198 4.92772 4.95787 5.05594 5.06417 5.10745 5.20771 5.28585 5.30514 5.31009 5.33002 5.39868 5.43268 5.50315 5.54002 5.61793 5.68446 5.80210 6.37290 6.84971 7.13899 7.16870 7.94459 8.31497 9.15617 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.003641 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.439136 B = 7688.351988 C = 8858.421605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.044 4.044 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.057 0.943 9 N -0.603 5.603 10 C 0.138 3.862 11 C -0.106 4.106 12 C -0.102 4.102 13 H 0.136 0.864 14 C 0.107 3.893 15 N -0.633 5.633 16 C 0.501 3.499 17 O -0.571 6.571 18 C 0.100 3.900 19 H 0.137 0.863 20 F -0.199 7.199 21 C -0.127 4.127 22 C -0.074 4.074 23 C -0.135 4.135 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.114 4.114 27 C -0.115 4.115 28 C 0.101 3.899 29 H 0.097 0.903 30 C 0.179 3.821 31 H 0.244 0.756 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.047 0.953 51 H 0.049 0.951 52 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -16.512 -19.476 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.231 1.231 6 H -0.207 1.207 7 C -0.386 4.386 8 H 0.074 0.926 9 N -0.326 5.326 10 C 0.013 3.987 11 C -0.145 4.145 12 C -0.121 4.121 13 H 0.153 0.847 14 C -0.014 4.014 15 N -0.369 5.369 16 C 0.289 3.711 17 O -0.449 6.449 18 C 0.061 3.939 19 H 0.154 0.846 20 F -0.180 7.180 21 C -0.165 4.165 22 C -0.092 4.092 23 C -0.172 4.172 24 C -0.152 4.152 25 C -0.159 4.159 26 C -0.151 4.151 27 C -0.152 4.152 28 C -0.003 4.003 29 H 0.115 0.885 30 C 0.052 3.948 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.120 0.880 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 4.378 -15.596 -19.444 25.308 hybrid contribution 0.176 2.124 0.613 2.218 sum 4.554 -13.473 -18.831 23.598 Atomic orbital electron populations 1.70168 1.06274 1.25000 1.56318 1.25565 0.96025 1.00853 1.01454 0.85435 0.78754 0.81202 0.76529 1.19423 1.23150 1.20689 1.19393 0.91688 0.86323 1.41164 0.92551 1.43712 1.29766 1.02493 1.56665 1.20982 0.96942 0.86049 0.94710 1.21726 0.95631 0.99964 0.97146 1.22854 0.97663 0.95859 0.95689 0.84658 1.23708 1.04679 0.77481 0.95507 1.49776 1.48099 1.08583 1.30393 1.21180 0.82065 0.84105 0.83717 1.90785 1.61477 1.22197 1.70478 1.21712 0.76114 1.03841 0.92200 0.84575 1.92765 1.36289 1.95489 1.93469 1.22091 1.01952 0.99449 0.93024 1.21124 0.93982 1.01418 0.92666 1.21962 0.95160 1.00722 0.99369 1.21514 0.98730 1.00756 0.94198 1.21569 0.96601 0.99780 0.97983 1.21509 0.94512 1.02030 0.97041 1.21588 0.99932 0.99428 0.94283 1.22768 0.95103 0.96742 0.85679 0.88491 1.19808 0.87414 0.96785 0.90761 0.94686 0.93365 0.95285 0.94286 0.87992 0.85624 0.88301 0.88987 0.92876 0.88693 0.94283 0.90821 0.90840 0.92298 0.90959 0.93237 0.90759 0.91372 0.90999 0.93419 0.93214 0.98631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.62 10.94 21.65 0.24 -60.38 16 2 C -0.04 -2.74 4.94 84.86 0.42 -2.32 16 3 Si 0.95 51.47 29.58 68.60 2.03 53.50 16 4 H -0.27 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.30 -17.06 7.11 99.48 0.71 -16.35 16 6 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.26 -15.53 9.53 84.03 0.80 -14.73 16 8 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 9 N -0.60 -32.14 3.03 -707.23 -2.14 -34.28 16 10 C 0.14 5.65 6.46 86.42 0.56 6.21 16 11 C -0.11 -3.15 5.71 30.67 0.17 -2.98 16 12 C -0.10 -2.56 4.57 -10.50 -0.05 -2.60 16 13 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 14 C 0.11 2.09 7.41 81.17 0.60 2.69 16 15 N -0.63 -21.37 3.33 -865.66 -2.88 -24.25 16 16 C 0.50 19.86 7.35 87.66 0.64 20.51 16 17 O -0.57 -30.51 15.85 -3.00 -0.05 -30.55 16 18 C 0.10 2.86 3.69 29.85 0.11 2.97 16 19 H 0.14 2.56 7.62 -2.39 -0.02 2.55 16 20 F -0.20 -6.72 13.88 44.97 0.62 -6.09 16 21 C -0.13 -3.27 4.27 30.60 0.13 -3.14 16 22 C -0.07 -1.40 2.19 -10.79 -0.02 -1.43 16 23 C -0.13 -2.92 4.65 30.59 0.14 -2.78 16 24 C -0.11 -1.90 5.92 30.59 0.18 -1.72 16 25 C -0.12 -1.82 5.92 30.59 0.18 -1.64 16 26 C -0.11 -1.55 5.92 30.61 0.18 -1.37 16 27 C -0.11 -1.97 5.21 30.61 0.16 -1.81 16 28 C 0.10 3.68 4.03 38.68 0.16 3.83 16 29 H 0.10 3.05 8.14 -2.38 -0.02 3.04 16 30 C 0.18 9.28 4.59 85.91 0.39 9.68 16 31 H 0.24 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.05 2.00 7.87 -2.39 -0.02 1.98 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.35 7.69 -2.39 -0.02 1.33 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.52 8.07 -2.39 -0.02 1.51 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.74 8.05 -2.38 -0.02 1.72 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.07 1.78 5.43 -2.39 -0.01 1.77 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.05 3.13 4.96 -2.39 -0.01 3.12 16 52 H 0.00 -0.23 7.99 -2.38 -0.02 -0.25 16 Total: -1.00 -85.69 394.39 3.46 -82.23 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.88 Total: 10.46 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 4.76 Total: 9.37 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -4.79 Total: -118.91 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.05 Total: -30.55 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.62 Total: -6.09 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.03 Total: 53.50 kcal Total: -85.69 3.46 -82.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084777116.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.504 kcal (2) G-P(sol) polarization free energy of solvation -85.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds