Wall clock time and date at job start Tue Mar 31 2020 21:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 110.31560 * 2 1 4 4 C 1.55024 * 110.35048 * 122.20224 * 2 1 3 5 5 C 1.54523 * 101.53003 * 155.34919 * 4 2 1 6 6 C 1.53689 * 103.64267 * 325.17167 * 5 4 2 7 7 N 1.47173 * 107.11404 * 21.54825 * 6 5 4 8 8 C 1.34776 * 125.66668 * 181.48425 * 7 6 5 9 9 O 1.21279 * 120.00449 * 180.02562 * 8 7 6 10 10 C 1.50703 * 119.99631 * 0.02562 * 8 7 6 11 11 F 1.39902 * 110.01606 * 58.61158 * 10 8 7 12 12 C 1.54260 * 110.03673 * 297.16528 * 10 8 7 13 13 C 1.54887 * 104.20048 * 217.10587 * 12 10 8 14 14 C 1.54887 * 102.74526 * 37.94167 * 13 12 10 15 15 C 1.53884 * 110.03207 * 179.97438 * 10 8 7 16 16 C 1.52271 * 110.20193 * 83.57988 * 5 4 2 17 17 C 1.53313 * 109.42136 * 182.19787 * 16 5 4 18 18 N 1.46933 * 108.70494 * 306.48416 * 17 16 5 19 19 C 1.36929 * 120.56535 * 234.26108 * 18 17 16 20 20 H 1.07998 * 120.00168 * 27.91569 * 19 18 17 21 21 C 1.38810 * 119.99969 * 207.91638 * 19 18 17 22 22 N 1.31618 * 119.99985 * 17.44971 * 21 19 18 23 23 Si 1.86805 * 120.00173 * 197.45289 * 21 19 18 24 24 H 1.48507 * 109.46933 * 89.99988 * 23 21 19 25 25 H 1.48500 * 109.47225 * 209.99760 * 23 21 19 26 26 H 1.48495 * 109.47042 * 330.00126 * 23 21 19 27 27 C 1.46939 * 118.86754 * 54.24176 * 18 17 16 28 28 C 1.52271 * 110.20673 * 206.76380 * 5 4 2 29 29 H 1.09000 * 109.47204 * 297.79908 * 1 2 3 30 30 H 1.09002 * 109.46934 * 57.80038 * 1 2 3 31 31 H 1.09002 * 109.47636 * 177.80198 * 1 2 3 32 32 H 1.08999 * 111.01923 * 37.28746 * 4 2 1 33 33 H 1.09001 * 111.04754 * 273.42119 * 4 2 1 34 34 H 1.09007 * 109.90960 * 140.92089 * 6 5 4 35 35 H 1.09010 * 109.91160 * 262.17786 * 6 5 4 36 36 H 1.09003 * 110.48294 * 335.79005 * 12 10 8 37 37 H 1.09001 * 110.48114 * 98.42313 * 12 10 8 38 38 H 1.09000 * 110.75792 * 279.62782 * 13 12 10 39 39 H 1.09003 * 110.75267 * 156.25692 * 13 12 10 40 40 H 1.09002 * 110.48458 * 203.37737 * 14 13 12 41 41 H 1.09000 * 110.48674 * 80.73580 * 14 13 12 42 42 H 1.08993 * 110.03167 * 238.57111 * 15 10 8 43 43 H 1.09002 * 110.02708 * 359.95730 * 15 10 8 44 44 H 1.09004 * 109.47888 * 302.17704 * 16 5 4 45 45 H 1.09000 * 109.48301 * 62.20431 * 16 5 4 46 46 H 1.09005 * 109.59634 * 186.72521 * 17 16 5 47 47 H 1.08994 * 109.73082 * 66.32817 * 17 16 5 48 48 H 0.97002 * 119.99950 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.59716 * 185.99255 * 27 18 17 50 50 H 1.08996 * 109.73014 * 65.59676 * 27 18 17 51 51 H 1.08995 * 109.48405 * 297.78288 * 28 5 4 52 52 H 1.09003 * 109.48181 * 57.82237 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9084 1.0221 0.0000 4 6 2.0691 -0.7746 1.2299 5 6 3.4667 -1.2082 0.7335 6 6 3.2520 -1.4769 -0.7644 7 7 2.0452 -0.7378 -1.1684 8 6 1.5012 -0.7352 -2.4016 9 8 0.5008 -0.0860 -2.6218 10 6 2.1362 -1.5392 -3.5068 11 9 2.1893 -2.8900 -3.1466 12 6 3.5569 -1.0118 -3.7949 13 6 3.7039 -1.1358 -5.3318 14 6 2.2937 -0.7488 -5.8422 15 6 1.3326 -1.3725 -4.8085 16 6 4.4704 -0.0816 0.9382 17 6 5.8366 -0.5101 0.3902 18 7 6.2073 -1.7943 1.0004 19 6 7.4050 -1.9372 1.6485 20 1 7.8738 -1.0817 2.1119 21 6 8.0167 -3.1818 1.7100 22 7 7.6507 -4.1366 0.8812 23 14 9.3592 -3.5016 2.9690 24 1 8.7502 -4.0151 4.2223 25 1 10.3110 -4.5075 2.4329 26 1 10.0833 -2.2366 3.2525 27 6 5.2707 -2.9223 0.9037 28 6 3.9082 -2.4780 1.4485 29 1 -0.3633 0.4793 0.9091 30 1 -0.3633 0.5476 -0.8696 31 1 -0.3634 -1.0269 -0.0394 32 1 1.4461 -1.6415 1.4498 33 1 2.1483 -0.1222 2.0995 34 1 4.1122 -1.1219 -1.3322 35 1 3.1076 -2.5441 -0.9333 36 1 3.6472 0.0296 -3.4857 37 1 4.3018 -1.6266 -3.2895 38 1 3.9498 -2.1592 -5.6150 39 1 4.4546 -0.4394 -5.7054 40 1 2.1166 -1.1717 -6.8311 41 1 2.1799 0.3350 -5.8638 42 1 0.9852 -2.3440 -5.1598 43 1 0.4829 -0.7107 -4.6405 44 1 4.1299 0.8090 0.4098 45 1 4.5581 0.1383 2.0022 46 1 6.5837 0.2430 0.6410 47 1 5.7799 -0.6226 -0.6924 48 1 8.0784 -5.0062 0.9239 49 1 5.6447 -3.7596 1.4929 50 1 5.1666 -3.2259 -0.1380 51 1 3.9903 -2.2833 2.5178 52 1 3.1741 -3.2655 1.2775 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086930369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:27 Heat of formation + Delta-G solvation = -85.144312 kcal Electronic energy + Delta-G solvation = -32455.950144 eV Core-core repulsion = 28368.980019 eV Total energy + Delta-G solvation = -4086.970125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.01263 -41.85052 -40.10946 -38.07631 -37.38196 -34.81235 -33.24498 -32.59162 -31.55910 -29.90138 -29.62241 -28.75276 -26.90218 -26.03300 -24.36715 -23.69119 -22.59243 -22.03043 -21.40210 -20.33446 -19.77982 -18.57516 -18.39966 -17.39452 -17.30763 -16.83602 -16.47634 -16.31797 -15.80478 -15.51821 -15.37861 -15.24234 -14.94529 -14.88446 -14.71266 -14.62454 -14.28836 -14.17279 -13.87440 -13.35945 -13.29824 -13.11063 -13.00126 -12.93419 -12.82238 -12.61740 -12.57007 -12.45271 -12.28904 -12.23300 -12.14758 -12.00686 -11.91757 -11.87462 -11.82443 -11.54181 -11.44466 -11.07459 -10.94803 -10.59403 -10.47933 -9.76485 -8.62702 -7.83893 -5.28429 1.24969 1.48207 1.50137 1.58004 1.73690 2.53605 2.97637 3.19424 3.28737 3.32404 3.47797 3.52942 3.67642 3.74858 3.79511 4.06968 4.13709 4.19764 4.23576 4.27991 4.32107 4.39388 4.41107 4.52197 4.57292 4.61128 4.65097 4.69621 4.74335 4.77135 4.78609 4.90607 4.93778 4.94111 5.03114 5.05650 5.09233 5.11067 5.14689 5.21261 5.24449 5.28915 5.33510 5.34194 5.41169 5.47135 5.56765 5.68726 5.80703 6.31842 6.42734 6.85830 7.19001 7.90950 8.41643 9.21662 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.003798 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.572447 B = 7371.325332 C = 8574.511550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.129 3.871 3 H 0.087 0.913 4 C -0.111 4.111 5 C -0.052 4.052 6 C 0.112 3.888 7 N -0.600 5.600 8 C 0.515 3.485 9 O -0.547 6.547 10 C 0.097 3.903 11 F -0.203 7.203 12 C -0.143 4.143 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.140 4.140 16 C -0.106 4.106 17 C 0.140 3.860 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.066 0.934 21 C -0.047 4.047 22 N -0.933 5.933 23 Si 0.961 3.039 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.269 1.269 27 C 0.178 3.822 28 C -0.113 4.113 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.015 0.985 48 H 0.248 0.752 49 H 0.050 0.950 50 H -0.003 1.003 51 H 0.061 0.939 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 8.758 -7.619 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.027 3.973 3 H 0.105 0.895 4 C -0.149 4.149 5 C -0.053 4.053 6 C -0.010 4.010 7 N -0.332 5.332 8 C 0.302 3.698 9 O -0.426 6.426 10 C 0.076 3.924 11 F -0.184 7.184 12 C -0.180 4.180 13 C -0.157 4.157 14 C -0.151 4.151 15 C -0.178 4.178 16 C -0.145 4.145 17 C 0.015 3.985 18 N -0.329 5.329 19 C -0.390 4.390 20 H 0.084 0.916 21 C -0.243 4.243 22 N -0.579 5.579 23 Si 0.790 3.210 24 H -0.214 1.214 25 H -0.225 1.225 26 H -0.194 1.194 27 C 0.052 3.948 28 C -0.153 4.153 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.033 0.967 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.015 0.985 51 H 0.080 0.920 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.797 8.930 -7.800 18.192 hybrid contribution 1.073 -1.028 0.689 1.638 sum -12.724 7.902 -7.112 16.581 Atomic orbital electron populations 1.22045 0.93520 1.01983 1.03504 1.22161 0.95256 0.95894 0.83953 0.89546 1.22933 0.94199 1.00690 0.97067 1.20855 0.95578 0.96358 0.92484 1.22257 0.86367 0.95915 0.96469 1.48725 1.28096 1.47364 1.09055 1.20585 0.83791 0.82499 0.82901 1.90606 1.25318 1.45066 1.81581 1.22020 0.99379 0.76386 0.94641 1.92889 1.97598 1.34560 1.93316 1.23029 0.92626 1.02416 0.99976 1.22549 0.98238 1.02953 0.91994 1.22360 0.92906 1.01321 0.98526 1.22768 0.99597 1.03970 0.91478 1.21780 0.94519 0.96440 1.01736 1.21101 0.95183 0.87783 0.94439 1.44253 1.16643 1.08364 1.63651 1.19504 0.98082 0.95055 1.26357 0.91629 1.25699 1.00488 0.97922 1.00154 1.70179 1.45869 1.04390 1.37496 0.85364 0.79009 0.77558 0.79108 1.21369 1.22465 1.19383 1.20584 0.87359 0.90478 0.96331 1.21907 0.97560 0.95975 0.99826 0.89548 0.91665 0.93811 0.90376 0.87690 0.91004 0.92281 0.89440 0.90465 0.90706 0.88905 0.88804 0.90424 0.89424 0.88950 0.90586 0.91409 0.92893 0.96735 0.94253 0.93110 0.98460 0.92008 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.60 71.98 0.62 -2.84 16 2 C 0.13 3.05 3.44 45.50 0.16 3.20 16 3 H 0.09 1.90 7.76 -2.39 -0.02 1.88 16 4 C -0.11 -2.52 5.41 31.80 0.17 -2.35 16 5 C -0.05 -1.50 0.53 -51.91 -0.03 -1.53 16 6 C 0.11 3.38 4.00 86.48 0.35 3.72 16 7 N -0.60 -16.66 3.25 -788.65 -2.56 -19.22 16 8 C 0.52 15.06 6.59 87.66 0.58 15.64 16 9 O -0.55 -17.48 12.94 -3.02 -0.04 -17.52 16 10 C 0.10 2.57 1.13 -10.81 -0.01 2.56 16 11 F -0.20 -6.28 15.61 44.97 0.70 -5.57 16 12 C -0.14 -3.38 4.77 31.67 0.15 -3.23 16 13 C -0.12 -2.19 6.91 31.88 0.22 -1.97 16 14 C -0.11 -1.89 6.83 31.68 0.22 -1.67 16 15 C -0.14 -3.07 6.25 31.34 0.20 -2.87 16 16 C -0.11 -3.12 4.78 30.46 0.15 -2.98 16 17 C 0.14 5.36 6.22 86.40 0.54 5.90 16 18 N -0.61 -28.79 2.98 -698.58 -2.08 -30.87 16 19 C -0.26 -13.81 9.57 84.03 0.80 -13.00 16 20 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 21 C -0.05 -2.57 4.90 84.86 0.42 -2.15 16 22 N -0.93 -54.23 11.19 21.65 0.24 -53.99 16 23 Si 0.96 44.09 29.59 68.60 2.03 46.12 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C 0.18 8.19 5.05 86.40 0.44 8.63 16 28 C -0.11 -3.95 4.71 30.46 0.14 -3.81 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.72 6.10 -2.39 -0.01 1.70 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.77 7.92 -2.39 -0.02 1.75 16 33 H 0.10 1.98 8.01 -2.39 -0.02 1.96 16 34 H 0.07 2.28 4.32 -2.38 -0.01 2.27 16 35 H 0.06 1.99 6.76 -2.38 -0.02 1.98 16 36 H 0.09 2.00 7.85 -2.39 -0.02 1.98 16 37 H 0.08 2.09 7.14 -2.39 -0.02 2.07 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.80 8.02 -2.39 -0.02 1.79 16 43 H 0.09 2.21 6.39 -2.39 -0.02 2.19 16 44 H 0.08 1.90 7.49 -2.39 -0.02 1.88 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 2.01 7.93 -2.38 -0.02 1.99 16 47 H 0.01 0.57 6.54 -2.39 -0.02 0.56 16 48 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.05 2.71 6.02 -2.39 -0.01 2.70 16 50 H 0.00 -0.13 7.48 -2.39 -0.02 -0.15 16 51 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 Total: -1.00 -63.58 381.73 4.29 -59.30 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.90 Total: 20.51 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.10 Total: 1.24 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -4.40 Total: -104.08 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.04 Total: -17.52 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 0.70 Total: -5.57 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -63.58 4.29 -59.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086930369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.847 kcal (2) G-P(sol) polarization free energy of solvation -63.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds