Wall clock time and date at job start Tue Mar 31 2020 21:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 F 1.39901 * 109.46978 * 239.99814 * 2 1 3 5 5 C 1.50701 * 109.47383 * 119.99697 * 2 1 3 6 6 O 1.21283 * 120.00010 * 350.51840 * 5 2 1 7 7 N 1.34777 * 120.00171 * 170.51396 * 5 2 1 8 8 C 1.46929 * 120.62915 * 4.96143 * 7 5 2 9 9 C 1.53192 * 108.88992 * 233.67406 * 8 7 5 10 10 C 1.53043 * 109.31615 * 305.29178 * 9 8 7 11 11 C 1.52996 * 109.46037 * 181.37129 * 10 9 8 12 12 H 1.09003 * 112.78214 * 316.22779 * 11 10 9 13 13 N 1.47294 * 113.52509 * 185.30863 * 11 10 9 14 14 C 1.36936 * 135.88719 * 91.35836 * 13 11 10 15 15 H 1.07998 * 120.00180 * 0.02562 * 14 13 11 16 16 C 1.38810 * 119.99909 * 180.02562 * 14 13 11 17 17 N 1.31622 * 120.00359 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99992 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47011 * 90.00003 * 18 16 14 20 20 H 1.48497 * 109.46802 * 209.99853 * 18 16 14 21 21 H 1.48500 * 109.46926 * 329.99947 * 18 16 14 22 22 C 1.47297 * 88.22386 * 271.38908 * 13 11 10 23 23 C 1.52350 * 113.52256 * 87.14035 * 11 10 9 24 24 C 1.52621 * 122.02986 * 324.73719 * 23 11 10 25 25 C 1.54007 * 86.67210 * 207.82240 * 24 23 11 26 26 C 1.52614 * 122.03563 * 214.13129 * 23 11 10 27 27 C 1.53042 * 109.53110 * 61.36874 * 10 9 8 28 28 C 1.47208 * 120.81402 * 185.10411 * 7 5 2 29 29 H 1.09006 * 109.47048 * 299.99737 * 1 2 3 30 30 H 1.08994 * 109.47062 * 60.00092 * 1 2 3 31 31 H 1.08997 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46952 * 187.17842 * 3 2 1 33 33 H 1.08998 * 109.46633 * 307.17509 * 3 2 1 34 34 H 1.08997 * 109.47420 * 67.17809 * 3 2 1 35 35 H 1.08993 * 109.58463 * 113.82039 * 8 7 5 36 36 H 1.08998 * 109.58592 * 353.53003 * 8 7 5 37 37 H 1.08997 * 109.49969 * 65.24940 * 9 8 7 38 38 H 1.09006 * 109.49621 * 185.31310 * 9 8 7 39 39 H 1.08989 * 109.46042 * 301.35240 * 10 9 8 40 40 H 0.96996 * 120.00147 * 179.97438 * 17 16 14 41 41 H 1.08998 * 113.52380 * 88.60978 * 22 13 11 42 42 H 1.08994 * 113.52321 * 219.16089 * 22 13 11 43 43 H 1.08997 * 113.68548 * 322.26195 * 24 23 11 44 44 H 1.09003 * 113.68302 * 93.38233 * 24 23 11 45 45 H 1.09005 * 113.56593 * 269.87806 * 25 24 23 46 46 H 1.08995 * 113.57188 * 139.12733 * 25 24 23 47 47 H 1.09002 * 113.68423 * 266.62147 * 26 23 11 48 48 H 1.09001 * 113.68122 * 37.63668 * 26 23 11 49 49 H 1.08996 * 109.50056 * 58.59221 * 27 10 9 50 50 H 1.09004 * 109.49326 * 178.65260 * 27 10 9 51 51 H 1.08996 * 109.53590 * 6.53181 * 28 7 5 52 52 H 1.09007 * 109.67200 * 246.23034 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7103 1.2305 6 8 1.2578 -1.0190 2.1113 7 7 3.3424 -1.0027 1.3522 8 6 4.3090 -0.5409 0.3466 9 6 5.1078 -1.7446 -0.1630 10 6 5.7408 -2.4721 1.0254 11 6 6.5674 -3.6550 0.5174 12 1 6.0566 -4.2245 -0.2591 13 7 7.1177 -4.4939 1.5958 14 6 6.7098 -5.6074 2.2807 15 1 5.7598 -6.0659 2.0492 16 6 7.5175 -6.1468 3.2724 17 7 8.6751 -5.5878 3.5550 18 14 6.9614 -7.6662 4.2062 19 1 7.4395 -8.8828 3.5016 20 1 7.5243 -7.6364 5.5800 21 1 5.4783 -7.6870 4.2793 22 6 8.2977 -3.6125 1.6170 23 6 8.0006 -3.2851 0.1568 24 6 8.3574 -1.9357 -0.4606 25 6 9.5525 -2.6526 -1.1160 26 6 8.7460 -3.9587 -0.9920 27 6 4.6400 -2.9827 1.9580 28 6 3.8359 -1.7931 2.4918 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1224 1.4452 -0.1284 33 1 1.5756 1.9920 -0.8188 34 1 1.7853 1.9180 0.9472 35 1 4.9874 0.1833 0.7975 36 1 3.7781 -0.0764 -0.4843 37 1 4.4417 -2.4252 -0.6933 38 1 5.8910 -1.4016 -0.8392 39 1 6.3875 -1.7841 1.5696 40 1 9.2392 -5.9645 4.2483 41 1 8.1905 -2.7579 2.2850 42 1 9.2369 -4.1463 1.7619 43 1 7.6192 -1.5724 -1.1756 44 1 8.6470 -1.1820 0.2717 45 1 10.4563 -2.6390 -0.5067 46 1 9.7320 -2.3473 -2.1468 47 1 9.3449 -4.8154 -0.6828 48 1 8.1176 -4.1707 -1.8570 49 1 3.9783 -3.6516 1.4078 50 1 5.0905 -3.5214 2.7917 51 1 2.9909 -2.1561 3.0768 52 1 4.4751 -1.1722 3.1197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093351962.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:09 Heat of formation + Delta-G solvation = -22.541178 kcal Electronic energy + Delta-G solvation = -31900.173327 eV Core-core repulsion = 27815.917878 eV Total energy + Delta-G solvation = -4084.255449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.07104 -41.81531 -40.94785 -38.44599 -36.63517 -34.88463 -34.30591 -33.18465 -32.07270 -29.21793 -28.45597 -27.72916 -26.49480 -25.46048 -24.90060 -24.09670 -23.62596 -22.05975 -21.14613 -20.15050 -18.83107 -18.70998 -18.27266 -17.52312 -17.03419 -16.91207 -16.40637 -16.15307 -15.93041 -15.78271 -15.56580 -15.54949 -15.06054 -14.81203 -14.40863 -14.30439 -14.15059 -13.73667 -13.65996 -13.47043 -13.33317 -13.18198 -13.16302 -13.04556 -12.97101 -12.91252 -12.77015 -12.47241 -12.26914 -12.21830 -12.09201 -11.98891 -11.90828 -11.77102 -11.55410 -11.18774 -11.14270 -10.85824 -10.71494 -10.71023 -10.40200 -9.75038 -8.79800 -7.87948 -5.17017 1.27838 1.41667 1.42061 1.50254 1.79219 2.46046 3.04511 3.31292 3.39069 3.42009 3.58523 3.63670 3.73003 3.84149 3.88174 3.98293 4.04490 4.08968 4.16303 4.27778 4.33414 4.37922 4.55770 4.58786 4.64354 4.67965 4.71445 4.73243 4.76243 4.79112 4.87305 4.91696 4.95069 4.97078 5.02987 5.10191 5.13362 5.15477 5.20338 5.22698 5.25018 5.26137 5.33491 5.52414 5.54948 5.59475 5.68196 5.72968 5.77078 5.99882 6.25792 6.87532 6.96117 7.65428 8.69232 9.29677 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.003823 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.351727 B = 7322.890423 C = 9049.260885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.104 3.896 3 C -0.175 4.175 4 F -0.196 7.196 5 C 0.490 3.510 6 O -0.571 6.571 7 N -0.595 5.595 8 C 0.092 3.908 9 C -0.118 4.118 10 C -0.077 4.077 11 C 0.161 3.839 12 H 0.037 0.963 13 N -0.623 5.623 14 C -0.209 4.209 15 H 0.073 0.927 16 C -0.064 4.064 17 N -0.950 5.950 18 Si 0.964 3.036 19 H -0.288 1.288 20 H -0.295 1.295 21 H -0.274 1.274 22 C 0.182 3.818 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.125 4.125 26 C -0.114 4.114 27 C -0.109 4.109 28 C 0.120 3.880 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.245 0.755 41 H 0.014 0.986 42 H 0.026 0.974 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.034 0.966 48 H 0.090 0.910 49 H 0.039 0.961 50 H 0.055 0.945 51 H 0.069 0.931 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 18.577 -13.301 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.083 3.917 3 C -0.232 4.232 4 F -0.177 7.177 5 C 0.277 3.723 6 O -0.451 6.451 7 N -0.327 5.327 8 C -0.029 4.029 9 C -0.156 4.156 10 C -0.098 4.098 11 C 0.054 3.946 12 H 0.055 0.945 13 N -0.345 5.345 14 C -0.337 4.337 15 H 0.091 0.909 16 C -0.257 4.257 17 N -0.600 5.600 18 Si 0.794 3.206 19 H -0.215 1.215 20 H -0.222 1.222 21 H -0.200 1.200 22 C 0.056 3.944 23 C -0.117 4.117 24 C -0.148 4.148 25 C -0.162 4.162 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.002 4.002 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.045 0.955 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.053 0.947 48 H 0.109 0.891 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.088 0.912 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.171 18.089 -12.608 23.880 hybrid contribution 0.010 -1.914 1.470 2.414 sum -9.161 16.175 -11.137 21.670 Atomic orbital electron populations 1.22191 0.90142 1.03795 1.05246 1.21266 0.97392 0.94157 0.78867 1.22618 1.04008 0.90653 1.05945 1.92874 1.89931 1.83155 1.51741 1.21547 0.82103 0.79509 0.89164 1.90687 1.56072 1.54812 1.43500 1.48331 1.06964 1.52009 1.25388 1.22422 0.91699 0.97033 0.91755 1.21949 0.99752 0.96746 0.97189 1.21293 0.95324 0.96832 0.96314 1.21942 0.93502 0.90064 0.89062 0.94456 1.45897 1.20202 1.26596 1.41834 1.19103 1.01697 1.00801 1.12135 0.90887 1.25413 0.97360 1.02152 1.00745 1.70002 1.12350 1.42794 1.34857 0.85278 0.77645 0.79971 0.77711 1.21521 1.22170 1.19955 1.21608 0.91280 0.90438 0.91070 1.22825 0.95570 0.98449 0.94836 1.22730 0.97968 0.94505 0.99576 1.22742 0.96833 0.95065 1.01579 1.22521 0.98386 0.97169 0.97078 1.21622 0.96839 0.96442 0.99863 1.21561 0.98016 0.92556 0.88116 0.89748 0.87846 0.92727 0.89175 0.87485 0.89712 0.88974 0.86537 0.92679 0.87623 0.91430 0.94593 0.96798 0.95524 0.87352 0.91145 0.91367 0.89164 0.94695 0.89142 0.94258 0.92644 0.91245 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.27 71.98 0.60 -2.01 16 2 C 0.10 1.95 1.20 -11.54 -0.01 1.93 16 3 C -0.18 -1.91 8.57 71.98 0.62 -1.30 16 4 F -0.20 -4.00 14.70 44.97 0.66 -3.34 16 5 C 0.49 13.18 6.77 87.66 0.59 13.77 16 6 O -0.57 -19.62 15.43 -3.04 -0.05 -19.67 16 7 N -0.60 -15.38 2.98 -818.20 -2.44 -17.83 16 8 C 0.09 1.75 5.02 86.36 0.43 2.18 16 9 C -0.12 -2.67 5.28 30.67 0.16 -2.51 16 10 C -0.08 -2.41 1.55 -10.77 -0.02 -2.42 16 11 C 0.16 6.14 3.62 42.26 0.15 6.29 16 12 H 0.04 1.48 8.13 -2.39 -0.02 1.46 16 13 N -0.62 -31.12 3.02 -711.59 -2.15 -33.27 16 14 C -0.21 -11.75 9.95 84.03 0.84 -10.92 16 15 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 17 N -0.95 -58.10 11.52 21.65 0.25 -57.85 16 18 Si 0.96 47.23 29.55 68.60 2.03 49.26 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 20 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 22 C 0.18 8.48 6.81 83.72 0.57 9.05 16 23 C -0.12 -4.00 1.07 -52.81 -0.06 -4.06 16 24 C -0.11 -2.63 6.90 30.81 0.21 -2.42 16 25 C -0.12 -3.03 8.08 31.26 0.25 -2.78 16 26 C -0.11 -3.61 7.90 30.81 0.24 -3.37 16 27 C -0.11 -3.92 5.17 30.67 0.16 -3.77 16 28 C 0.12 3.70 6.43 86.31 0.55 4.26 16 29 H 0.08 1.40 8.00 -2.38 -0.02 1.38 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 0.83 5.61 -2.39 -0.01 0.82 16 33 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.91 8.13 -2.39 -0.02 0.89 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.12 1.76 3.61 -2.39 -0.01 1.75 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.85 5.58 -2.38 -0.01 1.83 16 39 H 0.07 2.17 7.16 -2.39 -0.02 2.15 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.01 0.68 7.55 -2.39 -0.02 0.66 16 42 H 0.03 1.44 7.17 -2.39 -0.02 1.43 16 43 H 0.11 1.97 6.04 -2.39 -0.01 1.95 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 49 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.05 2.45 6.99 -2.38 -0.02 2.43 16 51 H 0.07 2.38 7.06 -2.39 -0.02 2.37 16 52 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -72.99 391.48 4.96 -68.03 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.90 Total: 15.94 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.76 Total: -1.28 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -4.34 Total: -108.94 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.66 Total: -3.34 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -72.99 4.96 -68.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093351962.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.488 kcal (2) G-P(sol) polarization free energy of solvation -72.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds