Wall clock time and date at job start Tue Mar 31 2020 21:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47186 * 2 1 4 4 F 1.39898 * 109.47105 * 239.99867 * 2 1 3 5 5 C 1.50706 * 109.47429 * 120.00180 * 2 1 3 6 6 O 1.21280 * 119.99815 * 351.83867 * 5 2 1 7 7 N 1.34777 * 120.00118 * 171.84084 * 5 2 1 8 8 C 1.46927 * 120.62893 * 5.27767 * 7 5 2 9 9 C 1.53193 * 108.77439 * 233.58350 * 8 7 5 10 10 C 1.53040 * 109.30935 * 305.36760 * 9 8 7 11 11 C 1.52998 * 109.45649 * 181.38749 * 10 9 8 12 12 H 1.09009 * 113.00540 * 189.12814 * 11 10 9 13 13 N 1.47786 * 113.93844 * 321.08898 * 11 10 9 14 14 C 1.36940 * 134.37454 * 270.33421 * 13 11 10 15 15 H 1.07999 * 119.99869 * 4.88869 * 14 13 11 16 16 C 1.38813 * 120.00081 * 184.88728 * 14 13 11 17 17 N 1.31622 * 119.99523 * 5.16885 * 16 14 13 18 18 Si 1.86793 * 120.00255 * 185.16789 * 16 14 13 19 19 H 1.48495 * 109.47192 * 84.99371 * 18 16 14 20 20 H 1.48497 * 109.47375 * 205.00066 * 18 16 14 21 21 H 1.48504 * 109.47029 * 324.99793 * 18 16 14 22 22 C 1.47777 * 91.25101 * 90.35208 * 13 11 10 23 23 C 1.52964 * 85.76412 * 23.87723 * 22 13 11 24 24 C 1.52800 * 121.30181 * 102.44810 * 23 22 13 25 25 C 1.53975 * 86.73858 * 101.25108 * 24 23 22 26 26 C 1.52800 * 121.30111 * 211.47504 * 23 22 13 27 27 C 1.53039 * 109.53982 * 61.36483 * 10 9 8 28 28 C 1.46918 * 120.63195 * 185.25003 * 7 5 2 29 29 H 1.09000 * 109.46838 * 299.99728 * 1 2 3 30 30 H 1.08993 * 109.47326 * 60.00100 * 1 2 3 31 31 H 1.09000 * 109.46965 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47455 * 184.79531 * 3 2 1 33 33 H 1.08998 * 109.46977 * 304.79779 * 3 2 1 34 34 H 1.09000 * 109.47037 * 64.79659 * 3 2 1 35 35 H 1.09007 * 109.58440 * 113.79775 * 8 7 5 36 36 H 1.08998 * 109.70813 * 353.44344 * 8 7 5 37 37 H 1.09000 * 109.49461 * 185.41719 * 9 8 7 38 38 H 1.08995 * 109.49593 * 65.31503 * 9 8 7 39 39 H 1.09007 * 109.45986 * 301.35444 * 10 9 8 40 40 H 0.97004 * 119.99400 * 180.02562 * 17 16 14 41 41 H 1.09000 * 113.82740 * 269.67108 * 22 13 11 42 42 H 1.09002 * 113.82701 * 138.08386 * 22 13 11 43 43 H 1.09001 * 113.66866 * 215.70700 * 24 23 22 44 44 H 1.08993 * 113.66736 * 346.79003 * 24 23 22 45 45 H 1.09007 * 113.57536 * 270.03568 * 25 24 23 46 46 H 1.08996 * 113.65002 * 139.26616 * 25 24 23 47 47 H 1.08992 * 113.67088 * 13.21082 * 26 23 22 48 48 H 1.09006 * 113.66629 * 144.19873 * 26 23 22 49 49 H 1.08999 * 109.49607 * 58.58802 * 27 10 9 50 50 H 1.09000 * 109.49608 * 178.68252 * 27 10 9 51 51 H 1.09002 * 109.59203 * 246.20540 * 28 7 5 52 52 H 1.09002 * 109.58890 * 6.62878 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6595 -1.1422 5 6 2.0324 -0.7105 1.2305 6 8 1.2543 -1.0405 2.1003 7 7 3.3463 -0.9790 1.3643 8 6 4.3156 -0.4852 0.3767 9 6 5.1437 -1.6680 -0.1354 10 6 5.7736 -2.3972 1.0535 11 6 6.6295 -3.5584 0.5438 12 1 6.9782 -4.2133 1.3425 13 7 6.0405 -4.2787 -0.6043 14 6 5.1966 -5.3496 -0.7323 15 1 4.7590 -5.8002 0.1462 16 6 4.9037 -5.8558 -1.9912 17 7 5.5144 -5.3737 -3.0528 18 14 3.6429 -7.2213 -2.1786 19 1 2.2823 -6.6316 -2.2554 20 1 3.9220 -7.9858 -3.4207 21 1 3.7222 -8.1323 -1.0085 22 6 6.7255 -3.3828 -1.5593 23 6 7.7288 -3.1344 -0.4317 24 6 9.0995 -3.8097 -0.4255 25 6 9.6636 -2.4712 -0.9364 26 6 8.4439 -1.7918 -0.2869 27 6 4.6700 -2.9388 1.9649 28 6 3.8367 -1.7705 2.5008 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1266 1.4438 -0.0859 33 1 1.6082 1.9805 -0.8439 34 1 1.7485 1.9309 0.9298 35 1 4.9742 0.2463 0.8452 36 1 3.7877 -0.0210 -0.4562 37 1 5.9298 -1.3027 -0.7962 38 1 4.4977 -2.3546 -0.6825 39 1 6.3999 -1.7035 1.6146 40 1 5.3094 -5.7272 -3.9325 41 1 6.1435 -2.5027 -1.8325 42 1 7.1500 -3.8990 -2.4204 43 1 9.4495 -4.0803 0.5707 44 1 9.1889 -4.6248 -1.1436 45 1 9.6795 -2.3912 -2.0234 46 1 10.6127 -2.1933 -0.4782 47 1 8.0105 -0.9974 -0.8943 48 1 8.6077 -1.4927 0.7485 49 1 4.0285 -3.6135 1.3980 50 1 5.1190 -3.4781 2.7990 51 1 4.4561 -1.1439 3.1424 52 1 2.9906 -2.1559 3.0698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093351963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:15 Heat of formation + Delta-G solvation = -15.809803 kcal Electronic energy + Delta-G solvation = -32527.236369 eV Core-core repulsion = 28443.272814 eV Total energy + Delta-G solvation = -4083.963555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.09376 -41.88283 -40.90458 -38.37907 -36.49825 -34.92676 -34.27864 -32.97421 -32.00755 -29.08017 -28.53844 -27.97605 -26.51775 -25.57704 -24.78343 -24.33860 -23.30263 -21.93045 -21.09523 -20.07790 -18.84638 -18.68079 -18.21390 -17.55883 -17.08142 -16.82579 -16.31763 -16.16743 -16.03601 -15.91261 -15.61289 -15.46738 -15.17704 -14.65906 -14.42084 -14.26967 -14.03221 -13.78835 -13.52157 -13.41929 -13.28342 -13.18786 -13.09750 -13.06262 -13.01469 -12.91287 -12.74764 -12.45573 -12.29004 -12.21987 -12.07623 -12.00410 -11.85222 -11.69432 -11.36782 -11.16276 -11.11340 -10.79517 -10.77121 -10.61385 -10.45115 -9.69972 -8.69781 -7.84296 -5.12934 1.26539 1.36978 1.39502 1.45420 1.85583 2.46167 3.05353 3.33623 3.41256 3.42041 3.56080 3.69572 3.71934 3.86861 3.95891 4.00688 4.06803 4.15434 4.16742 4.24295 4.39516 4.43149 4.55614 4.57366 4.60969 4.63616 4.74636 4.76210 4.78968 4.85226 4.88997 4.92215 5.00582 5.03337 5.03995 5.06908 5.11639 5.14532 5.23001 5.23587 5.26867 5.34368 5.42519 5.52396 5.60628 5.70855 5.73111 5.76851 5.84221 6.07941 6.24159 6.87938 7.00866 7.70085 8.69523 9.30481 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009592 B = 0.004995 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.500463 B = 5604.759632 C = 7178.804394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.093 3.907 3 C -0.173 4.173 4 F -0.206 7.206 5 C 0.491 3.509 6 O -0.569 6.569 7 N -0.594 5.594 8 C 0.094 3.906 9 C -0.115 4.115 10 C -0.075 4.075 11 C 0.155 3.845 12 H 0.046 0.954 13 N -0.617 5.617 14 C -0.209 4.209 15 H 0.067 0.933 16 C -0.064 4.064 17 N -0.946 5.946 18 Si 0.955 3.045 19 H -0.297 1.297 20 H -0.293 1.293 21 H -0.273 1.273 22 C 0.167 3.833 23 C -0.109 4.109 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.111 4.111 27 C -0.119 4.119 28 C 0.117 3.883 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.027 0.973 39 H 0.105 0.895 40 H 0.243 0.757 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.089 0.911 44 H 0.032 0.968 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.104 0.896 49 H 0.024 0.976 50 H 0.083 0.917 51 H 0.103 0.897 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 18.510 8.989 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.072 3.928 3 C -0.230 4.230 4 F -0.187 7.187 5 C 0.278 3.722 6 O -0.449 6.449 7 N -0.325 5.325 8 C -0.028 4.028 9 C -0.153 4.153 10 C -0.096 4.096 11 C 0.049 3.951 12 H 0.064 0.936 13 N -0.341 5.341 14 C -0.338 4.338 15 H 0.084 0.916 16 C -0.257 4.257 17 N -0.596 5.596 18 Si 0.786 3.214 19 H -0.225 1.225 20 H -0.219 1.219 21 H -0.199 1.199 22 C 0.043 3.957 23 C -0.110 4.110 24 C -0.155 4.155 25 C -0.164 4.164 26 C -0.149 4.149 27 C -0.157 4.157 28 C -0.005 4.005 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.123 0.877 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.105 0.895 47 H 0.092 0.908 48 H 0.122 0.878 49 H 0.043 0.957 50 H 0.101 0.899 51 H 0.121 0.879 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.429 18.030 9.257 20.318 hybrid contribution -1.188 -2.009 -0.872 2.492 sum 0.241 16.020 8.384 18.083 Atomic orbital electron populations 1.22172 0.90276 1.03473 1.05302 1.21427 0.97501 0.94636 0.79278 1.22617 1.03892 0.90310 1.06133 1.92914 1.90106 1.83375 1.52323 1.21341 0.82541 0.79691 0.88646 1.90655 1.55900 1.54366 1.43950 1.48231 1.06243 1.51693 1.26380 1.22437 0.91506 0.96851 0.91961 1.22006 0.99077 0.96297 0.97923 1.21345 0.95735 0.96907 0.95566 1.22219 0.90713 0.91451 0.90733 0.93632 1.46169 1.54291 1.30238 1.03382 1.19143 1.18059 1.04507 0.92129 0.91555 1.25311 1.02579 1.02210 0.95640 1.69990 1.45738 1.46325 0.97576 0.85425 0.79260 0.79760 0.77004 1.22467 1.21934 1.19860 1.22262 0.89573 0.91114 0.92782 1.23079 0.92855 0.97993 0.97091 1.22579 0.95036 0.97055 1.00836 1.22730 0.98433 0.95081 1.00127 1.22738 0.95303 0.94908 1.01964 1.21795 0.97410 0.97111 0.99374 1.21690 0.98370 0.92700 0.87727 0.88939 0.88332 0.93304 0.89270 0.88069 0.88765 0.87449 0.88484 0.89356 0.95406 0.87702 0.94763 0.94423 0.95237 0.89298 0.94947 0.91416 0.89487 0.90835 0.87796 0.95750 0.89900 0.87926 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.26 71.98 0.59 -2.89 16 2 C 0.09 2.33 1.20 -11.54 -0.01 2.32 16 3 C -0.17 -2.68 8.54 71.98 0.61 -2.06 16 4 F -0.21 -6.57 14.84 44.97 0.67 -5.90 16 5 C 0.49 15.10 6.78 87.66 0.59 15.70 16 6 O -0.57 -20.73 15.42 -3.03 -0.05 -20.78 16 7 N -0.59 -16.62 2.97 -818.91 -2.43 -19.06 16 8 C 0.09 2.24 4.96 86.36 0.43 2.66 16 9 C -0.12 -3.61 3.61 30.67 0.11 -3.50 16 10 C -0.07 -2.20 1.87 -10.77 -0.02 -2.22 16 11 C 0.15 5.74 4.23 44.73 0.19 5.93 16 12 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 13 N -0.62 -30.51 2.82 -709.05 -2.00 -32.51 16 14 C -0.21 -11.95 10.69 84.03 0.90 -11.05 16 15 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 16 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 17 N -0.95 -58.55 11.30 21.65 0.24 -58.30 16 18 Si 0.96 48.65 29.56 68.60 2.03 50.67 16 19 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 20 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 21 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 22 C 0.17 7.65 6.51 86.12 0.56 8.21 16 23 C -0.11 -3.71 0.86 -52.29 -0.05 -3.76 16 24 C -0.12 -3.74 7.86 30.86 0.24 -3.50 16 25 C -0.13 -3.09 8.08 31.24 0.25 -2.84 16 26 C -0.11 -2.61 6.52 30.86 0.20 -2.41 16 27 C -0.12 -3.69 5.36 30.67 0.16 -3.53 16 28 C 0.12 3.12 6.42 86.36 0.55 3.68 16 29 H 0.09 1.86 8.01 -2.39 -0.02 1.84 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.25 5.41 -2.39 -0.01 1.24 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.10 2.28 3.63 -2.39 -0.01 2.27 16 37 H 0.09 2.62 4.52 -2.39 -0.01 2.61 16 38 H 0.03 1.21 7.15 -2.39 -0.02 1.19 16 39 H 0.10 2.28 7.89 -2.38 -0.02 2.26 16 40 H 0.24 14.81 8.31 -92.71 -0.77 14.03 16 41 H 0.04 1.72 4.92 -2.39 -0.01 1.71 16 42 H 0.03 1.60 6.90 -2.39 -0.02 1.59 16 43 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.07 1.61 7.37 -2.39 -0.02 1.60 16 48 H 0.10 1.89 8.08 -2.38 -0.02 1.87 16 49 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 50 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 51 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.07 2.13 7.04 -2.39 -0.02 2.11 16 Total: -1.00 -75.77 388.38 5.16 -70.61 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.91 Total: 17.86 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.79 Total: -2.60 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.19 Total: -109.87 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.67 Total: -5.90 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.67 kcal Total: -75.77 5.16 -70.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093351963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.801 kcal (2) G-P(sol) polarization free energy of solvation -75.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds