Wall clock time and date at job start Tue Mar 31 2020 21:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 119.99753 * 2 1 4 4 H 1.48498 * 109.47252 * 179.72472 * 3 2 1 5 5 H 1.48505 * 109.47050 * 299.72490 * 3 2 1 6 6 H 1.48502 * 109.47350 * 59.72146 * 3 2 1 7 7 C 1.38810 * 120.00226 * 179.72232 * 2 1 3 8 8 H 1.07994 * 120.00166 * 147.23130 * 7 2 1 9 9 N 1.36940 * 119.99679 * 327.22976 * 7 2 1 10 10 C 1.47288 * 135.89025 * 22.81118 * 9 7 2 11 11 C 1.52341 * 87.64409 * 206.03278 * 10 9 7 12 12 C 1.52628 * 122.03275 * 210.04350 * 11 10 9 13 13 C 1.54007 * 86.67290 * 207.82474 * 12 11 10 14 14 C 1.52625 * 122.03523 * 99.44073 * 11 10 9 15 15 C 1.47294 * 135.88655 * 202.43097 * 9 7 2 16 16 H 1.09009 * 113.52119 * 268.65495 * 15 9 7 17 17 C 1.52994 * 113.52523 * 39.27158 * 15 9 7 18 18 C 1.53039 * 109.45844 * 304.67365 * 17 15 9 19 19 C 1.53195 * 109.31033 * 178.61448 * 18 17 15 20 20 N 1.46921 * 108.78011 * 54.63497 * 19 18 17 21 21 C 1.34770 * 120.63619 * 126.41229 * 20 19 18 22 22 O 1.21276 * 120.00232 * 179.97438 * 21 20 19 23 23 C 1.50708 * 119.99787 * 359.97438 * 21 20 19 24 24 C 1.52997 * 109.46965 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.46939 * 179.97438 * 24 23 21 26 26 F 1.39898 * 109.47264 * 180.02562 * 25 24 23 27 27 C 1.46923 * 118.73453 * 306.39261 * 20 19 18 28 28 C 1.53034 * 109.46164 * 184.60451 * 17 15 9 29 29 H 0.96996 * 119.99808 * 174.00288 * 1 2 3 30 30 H 1.09002 * 113.52595 * 320.72349 * 10 9 7 31 31 H 1.09004 * 113.53025 * 91.26914 * 10 9 7 32 32 H 1.08999 * 113.67943 * 322.26725 * 12 11 10 33 33 H 1.08996 * 113.68343 * 93.38044 * 12 11 10 34 34 H 1.09005 * 113.57126 * 269.87879 * 13 12 11 35 35 H 1.09004 * 113.56754 * 139.12448 * 13 12 11 36 36 H 1.09000 * 113.67763 * 266.61861 * 14 11 10 37 37 H 1.09005 * 113.67940 * 37.63376 * 14 11 10 38 38 H 1.09000 * 109.45505 * 64.62965 * 17 15 9 39 39 H 1.09001 * 109.50182 * 298.56015 * 18 17 15 40 40 H 1.08996 * 109.50251 * 58.66191 * 18 17 15 41 41 H 1.09006 * 109.58588 * 294.84072 * 19 18 17 42 42 H 1.09005 * 109.58697 * 174.42386 * 19 18 17 43 43 H 1.09001 * 109.47074 * 299.99954 * 23 21 20 44 44 H 1.09000 * 109.46790 * 59.99981 * 23 21 20 45 45 H 1.09001 * 109.47202 * 299.99894 * 24 23 21 46 46 H 1.09000 * 109.47367 * 60.00353 * 24 23 21 47 47 H 1.09001 * 109.47109 * 299.99978 * 25 24 23 48 48 H 1.09000 * 109.46781 * 60.00021 * 25 24 23 49 49 H 1.09001 * 109.58768 * 293.81475 * 27 20 19 50 50 H 1.09005 * 109.58976 * 173.39693 * 27 20 19 51 51 H 1.09004 * 109.49937 * 301.33859 * 28 17 15 52 52 H 1.09002 * 109.50310 * 61.43476 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0067 5 1 1.8965 2.3935 -1.2159 6 1 1.8864 2.3994 1.2091 7 6 2.0104 -1.2021 0.0058 8 1 2.9614 -1.2790 -0.5000 9 7 1.4891 -2.2905 0.6530 10 6 0.1470 -2.7289 1.0724 11 6 0.8239 -3.5428 2.1680 12 6 0.2228 -4.8405 2.7011 13 6 0.9461 -4.5269 4.0240 14 6 0.9149 -3.0446 3.6077 15 6 2.0254 -3.5364 1.2273 16 1 2.0331 -4.3707 0.5258 17 6 3.3641 -3.3515 1.9446 18 6 4.3711 -2.7100 0.9873 19 6 5.6996 -2.4948 1.7192 20 7 6.1394 -3.7761 2.2878 21 6 7.3697 -4.2586 2.0234 22 8 7.7210 -5.3174 2.4992 23 6 8.3089 -3.4825 1.1364 24 6 9.6284 -4.2447 1.0001 25 6 10.5817 -3.4571 0.0991 26 9 11.7881 -4.1543 -0.0260 27 6 5.2126 -4.5213 3.1505 28 6 3.8895 -4.7139 2.4026 29 1 -0.4850 -0.8354 -0.0878 30 1 -0.4757 -1.9196 1.4536 31 1 -0.3638 -3.3396 0.3279 32 1 -0.8641 -4.8191 2.7807 33 1 0.5950 -5.7338 2.1997 34 1 1.9522 -4.9428 4.0799 35 1 0.3485 -4.7436 4.9095 36 1 1.8380 -2.5085 3.8279 37 1 0.0249 -2.5125 3.9439 38 1 3.2252 -2.7056 2.8116 39 1 4.5293 -3.3668 0.1319 40 1 3.9857 -1.7503 0.6432 41 1 5.5622 -1.7677 2.5196 42 1 6.4490 -2.1304 1.0165 43 1 7.8582 -3.3567 0.1519 44 1 8.4989 -2.5037 1.5768 45 1 10.0789 -4.3701 1.9847 46 1 9.4388 -5.2237 0.5599 47 1 10.1309 -3.3320 -0.8855 48 1 10.7714 -2.4779 0.5389 49 1 5.0355 -3.9596 4.0677 50 1 5.6406 -5.4942 3.3924 51 1 3.1612 -5.1805 3.0660 52 1 4.0522 -5.3519 1.5340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105393821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:04 Heat of formation + Delta-G solvation = -31.185304 kcal Electronic energy + Delta-G solvation = -31173.027940 eV Core-core repulsion = 27088.397653 eV Total energy + Delta-G solvation = -4084.630287 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.54849 -41.94791 -40.96367 -38.27035 -36.80588 -35.10027 -34.31548 -33.54659 -32.04921 -29.02353 -28.73814 -27.26861 -26.62261 -24.85634 -24.26877 -24.15906 -22.87773 -22.06550 -21.36304 -19.86461 -19.28979 -18.76551 -18.18746 -17.45043 -17.13468 -16.65787 -16.50173 -16.38899 -16.24052 -15.85596 -15.80407 -15.56534 -15.36961 -14.88004 -14.80907 -14.53285 -14.24957 -14.10937 -13.77102 -13.60067 -13.18427 -13.16070 -13.08473 -12.79779 -12.66309 -12.51140 -12.43518 -12.31924 -12.13733 -11.98295 -11.87137 -11.81294 -11.69283 -11.54684 -11.33179 -11.24844 -11.07262 -10.84191 -10.77822 -10.59290 -10.26765 -9.59530 -8.90841 -8.28065 -5.18820 1.61403 1.61592 1.68325 1.82951 2.02834 2.64768 3.13910 3.34233 3.39955 3.51823 3.73046 3.76520 3.87251 3.88301 3.94141 3.97882 4.08158 4.11632 4.19026 4.23717 4.27343 4.37177 4.39772 4.44882 4.56373 4.56936 4.61578 4.69162 4.74024 4.80640 4.82032 4.87055 4.91413 4.94909 4.98845 5.00277 5.03782 5.05836 5.11664 5.17635 5.24961 5.26641 5.35429 5.39126 5.54576 5.56473 5.63003 5.75433 5.89027 6.28826 6.43568 6.70949 7.15800 7.72322 8.66700 9.06228 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.003512 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.552562 B = 7971.420804 C =10057.813567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.065 4.065 3 Si 1.098 2.902 4 H -0.254 1.254 5 H -0.301 1.301 6 H -0.295 1.295 7 C -0.323 4.323 8 H 0.084 0.916 9 N -0.627 5.627 10 C 0.114 3.886 11 C -0.108 4.108 12 C -0.123 4.123 13 C -0.121 4.121 14 C -0.109 4.109 15 C 0.184 3.816 16 H 0.029 0.971 17 C -0.072 4.072 18 C -0.140 4.140 19 C 0.112 3.888 20 N -0.608 5.608 21 C 0.508 3.492 22 O -0.590 6.590 23 C -0.134 4.134 24 C -0.133 4.133 25 C 0.059 3.941 26 F -0.239 7.239 27 C 0.114 3.886 28 C -0.120 4.120 29 H 0.255 0.745 30 H 0.023 0.977 31 H 0.009 0.991 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.126 0.874 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.092 0.908 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.510 -6.775 6.422 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.262 4.262 3 Si 0.923 3.077 4 H -0.178 1.178 5 H -0.229 1.229 6 H -0.222 1.222 7 C -0.450 4.450 8 H 0.101 0.899 9 N -0.353 5.353 10 C -0.012 4.012 11 C -0.109 4.109 12 C -0.162 4.162 13 C -0.158 4.158 14 C -0.146 4.146 15 C 0.078 3.922 16 H 0.047 0.953 17 C -0.091 4.091 18 C -0.178 4.178 19 C -0.010 4.010 20 N -0.340 5.340 21 C 0.298 3.702 22 O -0.471 6.471 23 C -0.173 4.173 24 C -0.171 4.171 25 C 0.005 3.995 26 F -0.220 7.220 27 C -0.008 4.008 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.027 0.973 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.144 0.856 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.118 0.882 49 H 0.096 0.904 50 H 0.099 0.901 51 H 0.110 0.890 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.672 -5.474 6.590 16.135 hybrid contribution -0.808 -1.654 -0.837 2.022 sum 12.865 -7.128 5.753 15.792 Atomic orbital electron populations 1.70823 1.08550 1.29630 1.49765 1.27063 0.96272 1.03932 0.98885 0.83172 0.75811 0.72699 0.76029 1.17781 1.22936 1.22193 1.19849 1.05023 0.87878 1.32222 0.89913 1.46193 1.02834 1.18869 1.67417 1.22359 0.90328 0.94429 0.94089 1.22777 0.97354 0.96940 0.93849 1.22691 1.00122 0.96038 0.97307 1.22915 1.01498 0.94419 0.96946 1.22501 1.01373 0.97533 0.93232 1.21696 0.92478 0.87316 0.90722 0.95332 1.21159 0.93593 0.96274 0.98081 1.22210 0.94744 1.03184 0.97673 1.21927 0.96642 0.83937 0.98446 1.48296 1.13885 1.22785 1.49003 1.21209 0.82384 0.85511 0.81058 1.90661 1.76556 1.25080 1.54829 1.21631 0.93806 1.00667 1.01231 1.21820 0.94675 0.99564 1.01042 1.22205 0.79850 0.95278 1.02204 1.92727 1.49394 1.82383 1.97542 1.21575 0.88877 0.97408 0.92981 1.22002 0.96605 0.96796 1.00469 0.93452 0.95885 0.97326 0.90009 0.90905 0.88619 0.89970 0.91694 0.91373 0.91066 0.93866 0.89034 0.90364 0.87311 0.86573 0.85645 0.91512 0.92086 0.88714 0.88166 0.90397 0.90148 0.88972 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.07 13.15 21.65 0.28 -56.79 16 2 C -0.06 -3.54 5.43 84.86 0.46 -3.08 16 3 Si 1.10 47.74 30.03 68.60 2.06 49.80 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.30 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.32 -16.63 8.58 84.03 0.72 -15.91 16 8 H 0.08 4.10 6.15 -2.91 -0.02 4.08 16 9 N -0.63 -29.64 3.62 -712.58 -2.58 -32.22 16 10 C 0.11 5.18 6.73 83.64 0.56 5.75 16 11 C -0.11 -3.71 1.23 -52.79 -0.07 -3.77 16 12 C -0.12 -3.25 7.90 30.81 0.24 -3.00 16 13 C -0.12 -2.70 7.91 31.26 0.25 -2.46 16 14 C -0.11 -3.29 7.43 30.81 0.23 -3.06 16 15 C 0.18 6.77 3.41 42.33 0.14 6.92 16 16 H 0.03 1.13 8.13 -2.38 -0.02 1.11 16 17 C -0.07 -2.14 1.93 -10.77 -0.02 -2.17 16 18 C -0.14 -4.15 4.94 30.67 0.15 -4.00 16 19 C 0.11 2.41 6.34 86.36 0.55 2.96 16 20 N -0.61 -13.90 2.97 -818.89 -2.43 -16.34 16 21 C 0.51 12.11 7.70 87.66 0.67 12.79 16 22 O -0.59 -18.66 15.39 -3.02 -0.05 -18.71 16 23 C -0.13 -2.00 4.05 29.85 0.12 -1.88 16 24 C -0.13 -2.24 4.96 30.59 0.15 -2.09 16 25 C 0.06 0.76 7.55 71.98 0.54 1.30 16 26 F -0.24 -4.84 17.36 44.97 0.78 -4.06 16 27 C 0.11 2.63 6.43 86.36 0.56 3.19 16 28 C -0.12 -2.94 5.35 30.67 0.16 -2.77 16 29 H 0.26 15.71 6.03 -92.71 -0.56 15.15 16 30 H 0.02 1.19 6.87 -2.39 -0.02 1.17 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.89 5.25 -2.38 -0.01 1.88 16 35 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.06 2.01 6.07 -2.39 -0.01 2.00 16 37 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.07 2.25 5.78 -2.39 -0.01 2.23 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 3.32 4.32 -2.39 -0.01 3.31 16 41 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.11 1.71 5.93 -2.38 -0.01 1.69 16 43 H 0.12 1.37 7.69 -2.39 -0.02 1.36 16 44 H 0.13 1.20 7.94 -2.39 -0.02 1.19 16 45 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 46 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 47 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.08 2.01 7.01 -2.38 -0.02 1.99 16 51 H 0.09 1.98 5.00 -2.39 -0.01 1.97 16 52 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -70.81 389.66 4.62 -66.19 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 1.12 Total: 23.42 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: 5.43 Total: -11.30 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -4.73 Total: -105.34 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.71 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.06 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.06 Total: 49.80 kcal Total: -70.81 4.62 -66.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105393821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.001 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds