Wall clock time and date at job start Tue Mar 31 2020 21:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00065 * 2 1 4 4 O 1.21583 * 119.99929 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00128 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00199 * 179.97438 * 5 3 2 7 7 C 1.52990 * 109.47308 * 179.97438 * 6 5 3 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53444 * 111.21881 * 298.98363 * 12 11 10 14 14 C 1.53649 * 107.15779 * 242.10207 * 13 12 11 15 15 C 1.53898 * 105.87168 * 339.99830 * 14 13 12 16 16 C 1.53748 * 105.45287 * 28.28299 * 15 14 13 17 17 H 1.08999 * 110.52176 * 94.80638 * 16 15 14 18 18 N 1.46964 * 110.07370 * 218.82286 * 16 15 14 19 19 C 1.36938 * 126.36340 * 267.86684 * 18 16 15 20 20 H 1.08001 * 119.99941 * 0.02562 * 19 18 16 21 21 C 1.38818 * 119.99920 * 179.97438 * 19 18 16 22 22 N 1.31610 * 120.00059 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99772 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47436 * 89.99842 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00092 * 23 21 19 26 26 H 1.48501 * 109.47233 * 329.99696 * 23 21 19 27 27 C 1.47113 * 107.27496 * 87.86798 * 18 16 15 28 28 C 1.53893 * 111.24083 * 61.21009 * 12 11 10 29 29 H 1.09004 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47424 * 300.00018 * 1 2 3 31 31 H 1.08998 * 109.47023 * 60.00193 * 1 2 3 32 32 H 0.97001 * 119.99790 * 179.97438 * 2 1 3 33 33 H 0.97000 * 119.99732 * 359.97438 * 5 3 2 34 34 H 1.08998 * 109.47134 * 59.99329 * 6 5 3 35 35 H 1.09011 * 109.46711 * 299.99859 * 6 5 3 36 36 H 1.08998 * 109.47508 * 59.99635 * 7 6 5 37 37 H 1.09002 * 109.47337 * 299.99921 * 7 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 40 40 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 41 41 H 1.08998 * 109.89612 * 1.48896 * 13 12 11 42 42 H 1.09000 * 109.89799 * 122.72132 * 13 12 11 43 43 H 1.09008 * 110.17065 * 99.09963 * 14 13 12 44 44 H 1.08999 * 110.17294 * 220.82135 * 14 13 12 45 45 H 1.09000 * 110.25231 * 147.27912 * 15 14 13 46 46 H 1.08996 * 110.25044 * 269.29089 * 15 14 13 47 47 H 0.97006 * 120.00098 * 179.97438 * 22 21 19 48 48 H 1.08998 * 110.08661 * 148.90462 * 27 18 16 49 49 H 1.09002 * 110.08654 * 270.42181 * 27 18 16 50 50 H 1.09006 * 110.24399 * 243.80698 * 28 12 11 51 51 H 1.08997 * 110.24756 * 5.80398 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7233 2.1564 -0.0010 8 6 6.4769 3.4615 -0.0022 9 8 5.8704 4.5118 -0.0035 10 7 7.8247 3.4615 -0.0028 11 6 8.5571 4.7302 0.0021 12 6 10.0613 4.4507 0.0072 13 6 10.4760 3.6655 1.2587 14 6 11.4560 4.5502 2.0447 15 6 11.9924 5.5824 1.0370 16 6 10.8735 5.7598 -0.0025 17 1 10.2448 6.6122 0.2546 18 7 11.4510 5.8926 -1.3474 19 6 11.7845 7.0627 -1.9758 20 1 11.6278 8.0075 -1.4766 21 6 12.3250 7.0343 -3.2541 22 7 12.5174 5.8829 -3.8618 23 14 12.7807 8.6304 -4.1111 24 1 14.1885 8.9791 -3.7923 25 1 12.6322 8.4638 -5.5792 26 1 11.8834 9.7172 -3.6431 27 6 11.6041 4.5351 -1.8931 28 6 10.4879 3.6718 -1.2497 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8401 0.0004 33 1 3.9716 0.3271 -0.0005 34 1 3.9561 3.0077 0.8888 35 1 3.9555 3.0073 -0.8912 36 1 5.9867 1.5844 -0.8906 37 1 5.9867 1.5852 0.8893 38 1 8.3096 2.6214 -0.0021 39 1 8.2971 5.3033 -0.8879 40 1 8.2905 5.3002 0.8921 41 1 9.5990 3.4501 1.8690 42 1 10.9662 2.7363 0.9681 43 1 10.9363 5.0550 2.8592 44 1 12.2742 3.9471 2.4382 45 1 12.1952 6.5288 1.5382 46 1 12.8965 5.2071 0.5578 47 1 12.8948 5.8631 -4.7553 48 1 11.4893 4.5521 -2.9769 49 1 12.5815 4.1326 -1.6268 50 1 10.8714 2.6898 -0.9728 51 1 9.6457 3.5694 -1.9339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107390814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:21 Heat of formation + Delta-G solvation = -50.518785 kcal Electronic energy + Delta-G solvation = -29682.516441 eV Core-core repulsion = 25616.967753 eV Total energy + Delta-G solvation = -4065.548688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.33367 -39.96975 -38.97682 -35.64918 -34.78791 -34.73546 -33.94036 -31.76552 -31.27567 -30.26442 -28.12031 -26.93842 -26.84825 -24.67138 -23.79989 -23.07485 -21.28141 -20.64177 -20.46842 -19.58562 -19.02471 -18.23649 -17.23254 -17.01807 -16.32819 -16.31679 -15.56648 -15.51688 -15.08881 -14.67363 -14.57331 -14.44024 -14.25230 -13.88408 -13.58177 -13.53530 -13.30943 -13.13750 -12.73154 -12.59685 -12.57099 -12.14025 -11.90219 -11.71954 -11.60345 -11.16747 -11.03952 -10.85082 -10.68589 -10.56854 -10.54072 -10.25833 -10.07382 -10.04911 -10.00263 -9.69984 -9.62326 -9.60991 -9.48023 -9.15581 -8.88386 -8.66958 -6.88968 -5.65081 -3.09655 2.33913 2.65403 2.95096 3.27017 3.39738 3.45339 3.46886 3.97303 4.45700 4.47190 4.77158 4.79248 4.81944 4.93194 4.98380 5.05647 5.17690 5.18210 5.43579 5.48502 5.52126 5.59698 5.66008 5.72487 5.77619 5.89724 5.96581 6.04113 6.07453 6.10245 6.11648 6.14861 6.17308 6.29140 6.39811 6.44042 6.49272 6.54625 6.65800 6.67749 6.76024 6.88493 7.07613 7.49415 7.55811 7.63220 7.67369 7.85190 8.25690 8.32064 8.40171 9.21230 9.82151 10.48155 11.35768 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.002101 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.927905 B =13324.209294 C =14278.262006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.701 3.299 4 O -0.585 6.585 5 N -0.747 5.747 6 C 0.153 3.847 7 C -0.153 4.153 8 C 0.513 3.487 9 O -0.538 6.538 10 N -0.721 5.721 11 C 0.142 3.858 12 C -0.084 4.084 13 C -0.110 4.110 14 C -0.119 4.119 15 C -0.137 4.137 16 C 0.172 3.828 17 H 0.055 0.945 18 N -0.586 5.586 19 C -0.218 4.218 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.141 3.859 28 C -0.133 4.133 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.397 0.603 33 H 0.395 0.605 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.400 0.600 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.252 0.748 48 H 0.119 0.881 49 H 0.005 0.995 50 H 0.055 0.945 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.904 -17.717 10.453 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.462 6.462 5 N -0.403 5.403 6 C 0.029 3.971 7 C -0.194 4.194 8 C 0.298 3.702 9 O -0.415 6.415 10 N -0.372 5.372 11 C 0.019 3.981 12 C -0.086 4.086 13 C -0.148 4.148 14 C -0.158 4.158 15 C -0.177 4.177 16 C 0.062 3.938 17 H 0.073 0.927 18 N -0.307 5.307 19 C -0.346 4.346 20 H 0.096 0.904 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.015 3.985 28 C -0.172 4.172 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.228 0.772 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.234 0.766 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.136 0.864 49 H 0.023 0.977 50 H 0.073 0.927 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.829 -15.814 10.193 23.956 hybrid contribution 1.155 -0.567 -0.363 1.337 sum -13.674 -16.380 9.829 23.493 Atomic orbital electron populations 1.21391 0.78113 1.01901 1.02394 1.44917 1.07809 1.07078 1.81088 1.15944 0.81730 0.84311 0.77999 1.90970 1.67776 1.30294 1.57156 1.45093 1.04770 1.09809 1.80639 1.20890 0.87994 0.84058 1.04207 1.21797 0.95391 0.97179 1.05018 1.20227 0.82577 0.90733 0.76671 1.90763 1.68059 1.33435 1.49221 1.46044 1.05902 1.10432 1.74821 1.21392 0.89950 0.84582 1.02221 1.21891 0.92923 0.97947 0.95795 1.22141 0.98530 0.98342 0.95814 1.21993 0.98155 0.97638 0.97974 1.22703 1.00753 0.97600 0.96668 1.21131 0.91984 0.93519 0.87131 0.92676 1.44423 1.72231 1.02715 1.11361 1.19099 1.34176 0.84437 0.96922 0.90392 1.24773 1.01501 0.97136 0.97294 1.69654 1.50545 1.22471 1.14333 0.86065 0.78212 0.82384 0.78824 1.21687 1.21691 1.20647 1.22032 0.91958 0.82326 1.02169 1.23005 1.00678 0.97920 0.95554 0.90698 0.92368 0.92327 0.77046 0.77172 0.90583 0.90480 0.88189 0.88340 0.76639 0.90864 0.91828 0.92447 0.91871 0.92633 0.92602 0.92784 0.91364 0.93731 0.86402 0.97694 0.92682 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.62 10.70 59.85 0.64 1.26 16 2 N -0.75 -4.96 5.72 -72.07 -0.41 -5.37 16 3 C 0.70 7.49 8.57 -86.92 -0.74 6.75 16 4 O -0.58 -9.30 16.34 5.29 0.09 -9.21 16 5 N -0.75 -5.93 5.56 -65.23 -0.36 -6.29 16 6 C 0.15 1.57 4.96 -4.05 -0.02 1.55 16 7 C -0.15 -1.19 5.81 -27.89 -0.16 -1.35 16 8 C 0.51 6.46 7.83 -10.98 -0.09 6.37 16 9 O -0.54 -9.35 15.98 5.55 0.09 -9.26 16 10 N -0.72 -8.62 4.84 -60.30 -0.29 -8.91 16 11 C 0.14 2.18 4.23 -4.04 -0.02 2.16 16 12 C -0.08 -1.33 0.72 -153.26 -0.11 -1.44 16 13 C -0.11 -1.44 5.61 -26.16 -0.15 -1.58 16 14 C -0.12 -1.65 6.80 -25.93 -0.18 -1.83 16 15 C -0.14 -2.41 6.45 -25.87 -0.17 -2.58 16 16 C 0.17 3.37 3.39 -66.73 -0.23 3.15 16 17 H 0.06 1.11 7.85 -51.93 -0.41 0.70 16 18 N -0.59 -14.27 2.97 -162.47 -0.48 -14.75 16 19 C -0.22 -5.92 10.32 -15.06 -0.16 -6.07 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 22 N -0.92 -26.31 10.06 55.49 0.56 -25.75 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.14 3.25 5.99 -2.61 -0.02 3.24 16 28 C -0.13 -2.30 5.81 -25.16 -0.15 -2.45 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 1.21 8.84 -40.82 -0.36 0.85 16 33 H 0.39 1.62 8.49 -40.82 -0.35 1.27 16 34 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 35 H 0.08 0.99 8.10 -51.92 -0.42 0.57 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.40 3.73 7.82 -40.82 -0.32 3.41 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.06 0.65 7.46 -51.93 -0.39 0.27 16 42 H 0.06 0.78 7.01 -51.93 -0.36 0.41 16 43 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.07 1.36 7.94 -51.93 -0.41 0.94 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.12 3.14 5.52 -51.93 -0.29 2.85 16 49 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 50 H 0.05 0.82 7.04 -51.93 -0.37 0.46 16 51 H 0.06 0.97 7.65 -51.93 -0.40 0.57 16 LS Contribution 402.52 15.07 6.07 6.07 Total: -1.00 -35.73 402.52 -10.08 -45.81 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -8.68 Total: 3.95 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.63 Total: 6.75 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.99 Total: -61.07 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.18 Total: -18.47 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.73 -10.08 -45.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107390814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.708 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds