Wall clock time and date at job start Tue Mar 31 2020 21:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00065 * 2 1 4 4 O 1.21583 * 119.99929 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00128 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00199 * 179.97438 * 5 3 2 7 7 C 1.52990 * 109.47308 * 179.97438 * 6 5 3 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 C 1.53444 * 111.21881 * 298.98363 * 12 11 10 14 14 C 1.53649 * 107.15779 * 242.10207 * 13 12 11 15 15 C 1.53898 * 105.87168 * 339.99830 * 14 13 12 16 16 C 1.53748 * 105.45287 * 28.28299 * 15 14 13 17 17 H 1.08999 * 110.52176 * 94.80638 * 16 15 14 18 18 N 1.46964 * 110.07370 * 218.82286 * 16 15 14 19 19 C 1.36938 * 126.36340 * 267.86684 * 18 16 15 20 20 H 1.08001 * 119.99941 * 0.02562 * 19 18 16 21 21 C 1.38818 * 119.99920 * 179.97438 * 19 18 16 22 22 N 1.31610 * 120.00059 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99772 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47436 * 89.99842 * 23 21 19 25 25 H 1.48501 * 109.47085 * 210.00092 * 23 21 19 26 26 H 1.48501 * 109.47233 * 329.99696 * 23 21 19 27 27 C 1.47113 * 107.27496 * 87.86798 * 18 16 15 28 28 C 1.53893 * 111.24083 * 61.21009 * 12 11 10 29 29 H 1.09004 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47424 * 300.00018 * 1 2 3 31 31 H 1.08998 * 109.47023 * 60.00193 * 1 2 3 32 32 H 0.97001 * 119.99790 * 179.97438 * 2 1 3 33 33 H 0.97000 * 119.99732 * 359.97438 * 5 3 2 34 34 H 1.08998 * 109.47134 * 59.99329 * 6 5 3 35 35 H 1.09011 * 109.46711 * 299.99859 * 6 5 3 36 36 H 1.08998 * 109.47508 * 59.99635 * 7 6 5 37 37 H 1.09002 * 109.47337 * 299.99921 * 7 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 40 40 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 41 41 H 1.08998 * 109.89612 * 1.48896 * 13 12 11 42 42 H 1.09000 * 109.89799 * 122.72132 * 13 12 11 43 43 H 1.09008 * 110.17065 * 99.09963 * 14 13 12 44 44 H 1.08999 * 110.17294 * 220.82135 * 14 13 12 45 45 H 1.09000 * 110.25231 * 147.27912 * 15 14 13 46 46 H 1.08996 * 110.25044 * 269.29089 * 15 14 13 47 47 H 0.97006 * 120.00098 * 179.97438 * 22 21 19 48 48 H 1.08998 * 110.08661 * 148.90462 * 27 18 16 49 49 H 1.09002 * 110.08654 * 270.42181 * 27 18 16 50 50 H 1.09006 * 110.24399 * 243.80698 * 28 12 11 51 51 H 1.08997 * 110.24756 * 5.80398 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2192 2.4359 -0.0011 7 6 5.7233 2.1564 -0.0010 8 6 6.4769 3.4615 -0.0022 9 8 5.8704 4.5118 -0.0035 10 7 7.8247 3.4615 -0.0028 11 6 8.5571 4.7302 0.0021 12 6 10.0613 4.4507 0.0072 13 6 10.4760 3.6655 1.2587 14 6 11.4560 4.5502 2.0447 15 6 11.9924 5.5824 1.0370 16 6 10.8735 5.7598 -0.0025 17 1 10.2448 6.6122 0.2546 18 7 11.4510 5.8926 -1.3474 19 6 11.7845 7.0627 -1.9758 20 1 11.6278 8.0075 -1.4766 21 6 12.3250 7.0343 -3.2541 22 7 12.5174 5.8829 -3.8618 23 14 12.7807 8.6304 -4.1111 24 1 14.1885 8.9791 -3.7923 25 1 12.6322 8.4638 -5.5792 26 1 11.8834 9.7172 -3.6431 27 6 11.6041 4.5351 -1.8931 28 6 10.4879 3.6718 -1.2497 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9500 -0.8401 0.0004 33 1 3.9716 0.3271 -0.0005 34 1 3.9561 3.0077 0.8888 35 1 3.9555 3.0073 -0.8912 36 1 5.9867 1.5844 -0.8906 37 1 5.9867 1.5852 0.8893 38 1 8.3096 2.6214 -0.0021 39 1 8.2971 5.3033 -0.8879 40 1 8.2905 5.3002 0.8921 41 1 9.5990 3.4501 1.8690 42 1 10.9662 2.7363 0.9681 43 1 10.9363 5.0550 2.8592 44 1 12.2742 3.9471 2.4382 45 1 12.1952 6.5288 1.5382 46 1 12.8965 5.2071 0.5578 47 1 12.8948 5.8631 -4.7553 48 1 11.4893 4.5521 -2.9769 49 1 12.5815 4.1326 -1.6268 50 1 10.8714 2.6898 -0.9728 51 1 9.6457 3.5694 -1.9339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107390814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:20 Heat of formation + Delta-G solvation = -78.880747 kcal Electronic energy + Delta-G solvation = -29683.746308 eV Core-core repulsion = 25616.967753 eV Total energy + Delta-G solvation = -4066.778555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.40366 -40.97717 -40.19525 -36.51248 -36.18355 -35.55749 -35.34832 -33.36885 -32.41612 -31.62702 -29.46747 -28.52522 -27.56027 -25.87287 -25.53811 -24.03925 -22.14091 -22.06046 -21.69922 -20.90788 -19.90815 -19.49205 -18.91248 -18.08239 -17.22111 -17.14366 -16.92778 -16.61235 -16.41444 -16.04480 -15.59390 -15.36993 -15.31183 -15.20789 -14.98637 -14.87135 -14.31173 -14.19040 -14.11137 -13.77364 -13.61060 -13.33635 -13.01369 -12.90149 -12.83027 -12.74213 -12.54333 -12.40836 -12.17210 -12.05002 -11.85365 -11.60993 -11.52750 -11.49128 -11.45590 -11.34773 -10.97563 -10.88946 -10.69065 -10.44231 -10.03591 -9.78489 -8.86700 -7.73864 -5.19698 1.44576 1.45661 1.54174 1.62811 1.68392 2.13199 2.33208 2.49094 3.30434 3.39463 3.56140 3.69487 3.72933 3.76032 3.94714 4.10469 4.12864 4.34290 4.40425 4.48282 4.49429 4.56663 4.59499 4.67534 4.68204 4.68685 4.83731 4.89290 4.90249 4.93322 4.99637 5.01307 5.11522 5.18131 5.20556 5.30330 5.42313 5.42721 5.47232 5.50280 5.50457 5.56091 5.61594 5.71065 5.90260 6.02666 6.40772 6.62326 7.13834 7.14397 7.32067 7.59421 7.83002 8.47953 9.24214 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.002101 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.927905 B =13324.209294 C =14278.262006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.735 5.735 3 C 0.690 3.310 4 O -0.646 6.646 5 N -0.727 5.727 6 C 0.158 3.842 7 C -0.133 4.133 8 C 0.509 3.491 9 O -0.594 6.594 10 N -0.706 5.706 11 C 0.153 3.847 12 C -0.070 4.070 13 C -0.102 4.102 14 C -0.111 4.111 15 C -0.133 4.133 16 C 0.156 3.844 17 H 0.041 0.959 18 N -0.608 5.608 19 C -0.229 4.229 20 H 0.075 0.925 21 C -0.068 4.068 22 N -0.945 5.945 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.274 1.274 27 C 0.141 3.859 28 C -0.117 4.117 29 H 0.116 0.884 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.418 0.582 33 H 0.419 0.581 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.418 0.582 39 H 0.031 0.969 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.040 0.960 47 H 0.246 0.754 48 H 0.080 0.920 49 H -0.017 1.017 50 H 0.092 0.908 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 -21.286 12.476 28.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.391 5.391 3 C 0.390 3.610 4 O -0.527 6.527 5 N -0.384 5.384 6 C 0.032 3.968 7 C -0.173 4.173 8 C 0.296 3.704 9 O -0.474 6.474 10 N -0.358 5.358 11 C 0.029 3.971 12 C -0.072 4.072 13 C -0.139 4.139 14 C -0.149 4.149 15 C -0.173 4.173 16 C 0.048 3.952 17 H 0.059 0.941 18 N -0.330 5.330 19 C -0.358 4.358 20 H 0.093 0.907 21 C -0.260 4.260 22 N -0.595 5.595 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.199 1.199 27 C 0.015 3.985 28 C -0.155 4.155 29 H 0.135 0.865 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.254 0.746 33 H 0.256 0.744 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.256 0.744 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.098 0.902 49 H 0.001 0.999 50 H 0.110 0.890 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.155 -19.504 12.257 27.574 hybrid contribution 1.246 0.575 -0.984 1.689 sum -13.910 -18.929 11.273 26.055 Atomic orbital electron populations 1.21530 0.77548 1.04143 1.00990 1.44788 1.08182 1.06724 1.79452 1.16310 0.82423 0.84512 0.77793 1.90933 1.69139 1.32796 1.59866 1.44759 1.03920 1.10087 1.79653 1.20620 0.90146 0.84602 1.01388 1.21725 0.92174 0.94735 1.08628 1.21087 0.82506 0.91786 0.75005 1.90756 1.69099 1.35989 1.51602 1.45818 1.05814 1.09878 1.74320 1.21014 0.89944 0.85926 1.00245 1.21729 0.92448 0.96003 0.96980 1.22128 0.99578 0.98157 0.94048 1.21967 0.98980 0.96755 0.97214 1.22553 0.98818 0.98953 0.96972 1.21450 0.92918 0.95259 0.85538 0.94056 1.44648 1.72528 1.02391 1.13447 1.19399 1.33490 0.85663 0.97272 0.90691 1.25530 1.02375 0.99977 0.98133 1.69921 1.51511 1.23951 1.14168 0.85130 0.77886 0.79303 0.77365 1.21412 1.22005 1.19904 1.21826 0.93115 0.82992 1.00522 1.22861 0.98452 0.98530 0.95704 0.86547 0.93733 0.93907 0.74561 0.74371 0.93243 0.93921 0.84892 0.83994 0.74407 0.95007 0.91970 0.89559 0.89841 0.90974 0.90693 0.93120 0.94101 0.94435 0.90173 0.99949 0.88974 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 10.70 127.77 1.37 2.40 16 2 N -0.73 -8.11 5.72 -500.20 -2.86 -10.97 16 3 C 0.69 14.13 8.57 179.05 1.53 15.66 16 4 O -0.65 -21.20 16.34 -3.98 -0.06 -21.27 16 5 N -0.73 -9.92 5.56 -478.55 -2.66 -12.58 16 6 C 0.16 3.10 4.96 86.38 0.43 3.53 16 7 C -0.13 -1.56 5.81 29.85 0.17 -1.39 16 8 C 0.51 11.82 7.83 87.66 0.69 12.50 16 9 O -0.59 -20.91 15.98 -3.04 -0.05 -20.96 16 10 N -0.71 -14.82 4.84 -463.07 -2.24 -17.06 16 11 C 0.15 4.56 4.23 86.38 0.37 4.92 16 12 C -0.07 -2.10 0.72 -51.37 -0.04 -2.13 16 13 C -0.10 -2.18 5.61 30.96 0.17 -2.01 16 14 C -0.11 -2.67 6.80 31.12 0.21 -2.46 16 15 C -0.13 -4.60 6.45 31.15 0.20 -4.40 16 16 C 0.16 6.18 3.39 45.52 0.15 6.34 16 17 H 0.04 1.72 7.85 -2.39 -0.02 1.70 16 18 N -0.61 -30.67 2.97 -667.93 -1.98 -32.66 16 19 C -0.23 -12.92 10.32 84.03 0.87 -12.06 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 22 N -0.95 -56.26 10.06 21.65 0.22 -56.04 16 23 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 27 C 0.14 6.70 5.99 86.98 0.52 7.22 16 28 C -0.12 -3.87 5.81 31.61 0.18 -3.68 16 29 H 0.12 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.42 1.06 8.84 -92.71 -0.82 0.24 16 33 H 0.42 1.67 8.49 -92.71 -0.79 0.88 16 34 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.04 1.13 8.10 -2.38 -0.02 1.12 16 36 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.42 5.70 7.82 -92.71 -0.72 4.98 16 39 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.09 1.44 7.46 -2.39 -0.02 1.43 16 42 H 0.08 1.54 7.01 -2.39 -0.02 1.52 16 43 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 46 H 0.04 1.63 7.94 -2.39 -0.02 1.61 16 47 H 0.25 14.25 8.31 -92.70 -0.77 13.47 16 48 H 0.08 4.46 5.52 -2.39 -0.01 4.45 16 49 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 50 H 0.09 2.39 7.04 -2.38 -0.02 2.37 16 51 H 0.05 1.84 7.65 -2.39 -0.02 1.82 16 Total: -1.00 -87.72 402.52 -1.69 -89.41 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -1.38 Total: 12.43 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 7.30 Total: 21.03 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -9.53 Total: -129.31 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.11 Total: -42.23 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -87.72 -1.69 -89.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107390814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.533 kcal (2) G-P(sol) polarization free energy of solvation -87.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds