Wall clock time and date at job start Tue Mar 31 2020 20:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00142 * 2 1 4 4 C 1.46895 * 110.99748 * 123.95933 * 2 1 3 5 5 C 1.52994 * 109.47645 * 66.04383 * 4 2 1 6 6 C 1.52995 * 109.47412 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47165 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00393 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00243 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00337 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.85877 * 31.20789 * 10 9 7 12 12 C 1.54631 * 111.00185 * 267.39781 * 10 9 7 13 13 C 1.51284 * 104.19385 * 266.66406 * 12 10 9 14 14 O 1.21286 * 124.94229 * 163.74611 * 13 12 10 15 15 N 1.34621 * 110.15232 * 343.76674 * 13 12 10 16 16 C 1.46498 * 124.47196 * 179.53197 * 15 13 12 17 17 C 1.53955 * 113.73672 * 38.77169 * 16 15 13 18 18 N 1.47815 * 86.03142 * 222.07906 * 17 16 15 19 19 C 1.36942 * 134.45735 * 204.63726 * 18 17 16 20 20 H 1.07995 * 120.00024 * 179.87453 * 19 18 17 21 21 C 1.38813 * 119.99251 * 359.87436 * 19 18 17 22 22 N 1.31616 * 120.00790 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99234 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47360 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46624 * 120.00285 * 23 21 19 26 26 H 1.48499 * 109.46969 * 239.99659 * 23 21 19 27 27 C 1.47584 * 91.05244 * 24.55105 * 18 17 16 28 28 C 1.46768 * 111.17925 * 359.56068 * 15 13 12 29 29 H 1.09003 * 109.46817 * 296.04598 * 1 2 3 30 30 H 1.09010 * 109.47310 * 56.04030 * 1 2 3 31 31 H 1.08995 * 109.48043 * 176.04328 * 1 2 3 32 32 H 1.09003 * 109.46770 * 183.95944 * 3 2 1 33 33 H 1.09000 * 109.47129 * 303.95525 * 3 2 1 34 34 H 1.09002 * 109.46944 * 63.95487 * 3 2 1 35 35 H 1.09001 * 109.47325 * 306.03742 * 4 2 1 36 36 H 1.09006 * 109.46886 * 186.04607 * 4 2 1 37 37 H 1.09001 * 109.47282 * 59.99333 * 5 4 2 38 38 H 1.09006 * 109.47162 * 300.00055 * 5 4 2 39 39 H 1.08994 * 109.47846 * 59.99612 * 6 5 4 40 40 H 1.09005 * 109.46878 * 299.99481 * 6 5 4 41 41 H 0.97003 * 119.99653 * 359.97438 * 9 7 6 42 42 H 1.09000 * 110.48694 * 25.34120 * 12 10 9 43 43 H 1.08995 * 110.48768 * 147.85385 * 12 10 9 44 44 H 1.08995 * 112.94512 * 170.35499 * 16 15 13 45 45 H 1.09001 * 113.76731 * 336.34478 * 17 16 15 46 46 H 1.08995 * 113.76774 * 107.74899 * 17 16 15 47 47 H 0.96996 * 120.00297 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.77015 * 221.14747 * 27 18 17 49 49 H 1.08995 * 113.77102 * 89.75412 * 27 18 17 50 50 H 1.09002 * 110.24468 * 258.00978 * 28 15 13 51 51 H 1.09002 * 110.24463 * 136.09736 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6314 -2.2426 0.9702 6 6 2.1791 -3.0404 2.1553 7 6 1.8211 -4.4949 1.9902 8 8 1.1896 -4.8577 1.0204 9 7 2.2026 -5.3926 2.9203 10 6 1.8541 -6.8065 2.7601 11 1 1.8076 -7.0777 1.7054 12 6 0.5224 -7.1334 3.4747 13 6 0.9452 -7.6133 4.8457 14 8 0.2110 -7.7041 5.8068 15 7 2.2549 -7.9246 4.8446 16 6 2.9921 -8.4127 6.0127 17 6 2.1893 -9.3931 6.8870 18 7 2.7514 -8.6624 8.0425 19 6 2.9931 -8.9796 9.3525 20 1 3.4265 -8.2450 10.0149 21 6 2.6808 -10.2455 9.8289 22 7 2.1521 -11.1406 9.0218 23 14 3.0112 -10.6785 11.6158 24 1 3.6047 -9.5063 12.3077 25 1 1.7356 -11.0506 12.2789 26 1 3.9553 -11.8229 11.6814 27 6 2.9494 -7.4550 7.2172 28 6 2.8496 -7.7108 3.5200 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5741 -0.8524 31 1 -0.3635 -1.0251 -0.0709 32 1 3.0828 1.3431 -0.0710 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6612 1.1755 37 1 2.0656 -2.6214 0.0450 38 1 0.5470 -2.3475 0.9322 39 1 1.7445 -2.6616 3.0803 40 1 3.2634 -2.9356 2.1937 41 1 2.7080 -5.1025 3.6958 42 1 -0.0957 -6.2394 3.5573 43 1 -0.0136 -7.9188 2.9419 44 1 3.9941 -8.7638 5.7665 45 1 1.1090 -9.2894 6.7849 46 1 2.5277 -10.4265 6.8125 47 1 1.9336 -12.0250 9.3549 48 1 3.8935 -6.9439 7.4058 49 1 2.0930 -6.7808 7.2123 50 1 2.9668 -8.6623 3.0011 51 1 3.8144 -7.2127 3.6157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108566017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:11 Heat of formation + Delta-G solvation = -0.979509 kcal Electronic energy + Delta-G solvation = -29357.168474 eV Core-core repulsion = 25293.767970 eV Total energy + Delta-G solvation = -4063.400504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.79501 -39.63443 -38.04707 -37.26170 -36.39141 -33.96484 -33.58698 -32.17207 -30.47587 -28.14802 -27.93691 -27.52280 -26.89557 -24.75606 -23.89199 -23.38312 -21.81992 -21.11429 -20.68992 -20.31506 -18.31075 -17.44058 -17.02303 -16.70998 -16.40461 -16.27952 -15.75998 -15.44271 -15.19048 -14.99340 -14.87200 -14.44988 -14.19777 -13.92158 -13.78191 -13.50057 -13.39345 -12.97379 -12.82157 -12.69369 -12.53710 -12.28090 -12.11377 -11.95209 -11.83991 -11.75256 -11.70607 -11.63524 -11.41980 -11.36366 -10.96873 -10.86263 -10.71158 -10.22807 -10.07740 -9.96948 -9.60729 -9.51499 -9.15863 -8.79505 -8.67970 -8.19058 -6.83046 -5.73658 -3.05799 2.37797 2.79543 2.94010 3.24357 3.40967 3.46216 3.48549 3.54657 4.23379 4.39843 4.42325 4.49916 4.53209 4.66715 4.74510 4.76773 4.90894 4.97916 5.02842 5.04585 5.17807 5.18060 5.22664 5.26761 5.29031 5.36029 5.42193 5.43518 5.52515 5.54508 5.61280 5.64798 5.69891 5.78001 5.83659 5.96720 6.20670 6.25808 6.48899 6.56218 6.57897 6.60128 6.86114 7.20543 7.28107 7.48578 7.57807 7.62141 7.95678 7.99829 8.55508 9.06991 9.73302 10.62085 11.43609 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.001874 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.606179 B =14936.534610 C =15531.138244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.053 3.947 5 C -0.101 4.101 6 C -0.141 4.141 7 C 0.517 3.483 8 O -0.537 6.537 9 N -0.723 5.723 10 C 0.133 3.867 11 H 0.117 0.883 12 C -0.167 4.167 13 C 0.512 3.488 14 O -0.510 6.510 15 N -0.610 5.610 16 C 0.099 3.901 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.221 4.221 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.112 3.888 28 C 0.095 3.905 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.404 0.596 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.253 0.747 48 H 0.041 0.959 49 H 0.039 0.961 50 H 0.085 0.915 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 19.856 -20.725 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.272 5.272 3 C -0.125 4.125 4 C -0.075 4.075 5 C -0.139 4.139 6 C -0.182 4.182 7 C 0.304 3.696 8 O -0.414 6.414 9 N -0.375 5.375 10 C 0.027 3.973 11 H 0.135 0.865 12 C -0.208 4.208 13 C 0.298 3.702 14 O -0.384 6.384 15 N -0.345 5.345 16 C -0.004 4.004 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.565 5.565 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.015 4.015 28 C -0.030 4.030 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.239 0.761 42 H 0.118 0.882 43 H 0.129 0.871 44 H 0.123 0.877 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.103 0.897 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.864 19.079 -20.975 28.415 hybrid contribution 0.078 0.273 2.187 2.205 sum 1.942 19.351 -18.789 27.042 Atomic orbital electron populations 1.22470 0.87217 1.02804 1.00403 1.61948 1.08253 1.13754 1.43222 1.22389 1.00798 0.88762 1.00505 1.22181 1.00226 0.93806 0.91301 1.21328 1.02102 0.92620 0.97874 1.21644 1.03415 0.91753 1.01358 1.20690 0.78701 0.88115 0.82121 1.90718 1.39386 1.80870 1.30407 1.46069 1.57990 1.07462 1.25968 1.21846 0.93562 0.80676 1.01169 0.86546 1.22819 0.98494 1.04103 0.95410 1.20754 0.82106 0.77527 0.89789 1.90789 1.56257 1.52721 1.38653 1.48587 1.09982 1.65777 1.10202 1.24047 0.96492 0.98311 0.81518 1.22786 0.96866 0.95676 0.82009 1.45714 1.72012 1.08537 1.06850 1.19027 1.34989 0.96774 0.84053 0.90160 1.24803 1.01087 0.96369 0.98189 1.69835 1.47774 1.04946 1.33992 0.86033 0.77403 0.78001 0.84234 1.20468 1.21729 1.21700 1.22907 0.98021 0.91765 0.88813 1.22347 0.96867 0.99535 0.84242 0.95632 0.91444 0.90714 0.91304 0.91340 0.95685 0.94703 0.90638 0.90193 0.91037 0.88803 0.88610 0.76075 0.88220 0.87124 0.87680 0.92627 0.91164 0.93681 0.94061 0.94387 0.89704 0.89893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.06 0.56 0.69 16 2 N -0.55 -3.98 5.02 -251.26 -1.26 -5.24 16 3 C 0.02 0.13 9.57 60.07 0.57 0.71 16 4 C 0.05 0.34 4.96 -3.83 -0.02 0.32 16 5 C -0.10 -0.74 4.43 -26.74 -0.12 -0.85 16 6 C -0.14 -0.86 5.70 -27.89 -0.16 -1.02 16 7 C 0.52 4.70 7.83 -10.99 -0.09 4.62 16 8 O -0.54 -6.85 15.62 5.56 0.09 -6.76 16 9 N -0.72 -5.87 5.12 -52.23 -0.27 -6.14 16 10 C 0.13 1.22 3.53 -66.30 -0.23 0.98 16 11 H 0.12 1.02 7.54 -51.93 -0.39 0.63 16 12 C -0.17 -1.95 6.59 -26.74 -0.18 -2.13 16 13 C 0.51 8.43 7.43 -10.77 -0.08 8.35 16 14 O -0.51 -11.23 14.64 5.55 0.08 -11.15 16 15 N -0.61 -8.94 3.16 -166.57 -0.53 -9.47 16 16 C 0.10 1.83 4.81 -70.15 -0.34 1.49 16 17 C 0.15 3.78 6.90 -2.83 -0.02 3.76 16 18 N -0.60 -16.12 3.70 -177.88 -0.66 -16.78 16 19 C -0.22 -6.38 10.70 -15.06 -0.16 -6.55 16 20 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -28.09 11.39 55.49 0.63 -27.45 16 23 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.11 2.37 8.44 -2.97 -0.03 2.34 16 28 C 0.09 0.89 6.97 -3.12 -0.02 0.87 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.39 8.12 -51.92 -0.42 -0.03 16 31 H 0.07 0.52 6.47 -51.93 -0.34 0.19 16 32 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.03 0.22 8.12 -51.93 -0.42 -0.21 16 36 H 0.08 0.42 8.06 -51.93 -0.42 0.00 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.07 0.61 6.51 -51.93 -0.34 0.27 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.40 2.72 8.66 -40.82 -0.35 2.37 16 42 H 0.10 1.21 8.09 -51.93 -0.42 0.78 16 43 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 45 H 0.06 1.53 5.73 -51.93 -0.30 1.23 16 46 H 0.07 1.89 7.17 -51.93 -0.37 1.52 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.04 0.85 7.26 -51.93 -0.38 0.48 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -37.22 407.63 -9.95 -47.18 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.76 Total: -1.16 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: -0.40 Total: 13.25 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -2.08 Total: -65.08 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.92 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.22 -9.95 -47.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108566017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.196 kcal (2) G-P(sol) polarization free energy of solvation -37.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds