Wall clock time and date at job start Tue Mar 31 2020 20:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00142 * 2 1 4 4 C 1.46895 * 110.99748 * 123.95933 * 2 1 3 5 5 C 1.52994 * 109.47645 * 66.04383 * 4 2 1 6 6 C 1.52995 * 109.47412 * 180.02562 * 5 4 2 7 7 C 1.50696 * 109.47165 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00393 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00243 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00337 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.85877 * 31.20789 * 10 9 7 12 12 C 1.54631 * 111.00185 * 267.39781 * 10 9 7 13 13 C 1.51284 * 104.19385 * 266.66406 * 12 10 9 14 14 O 1.21286 * 124.94229 * 163.74611 * 13 12 10 15 15 N 1.34621 * 110.15232 * 343.76674 * 13 12 10 16 16 C 1.46498 * 124.47196 * 179.53197 * 15 13 12 17 17 C 1.53955 * 113.73672 * 38.77169 * 16 15 13 18 18 N 1.47815 * 86.03142 * 222.07906 * 17 16 15 19 19 C 1.36942 * 134.45735 * 204.63726 * 18 17 16 20 20 H 1.07995 * 120.00024 * 179.87453 * 19 18 17 21 21 C 1.38813 * 119.99251 * 359.87436 * 19 18 17 22 22 N 1.31616 * 120.00790 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99234 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47360 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46624 * 120.00285 * 23 21 19 26 26 H 1.48499 * 109.46969 * 239.99659 * 23 21 19 27 27 C 1.47584 * 91.05244 * 24.55105 * 18 17 16 28 28 C 1.46768 * 111.17925 * 359.56068 * 15 13 12 29 29 H 1.09003 * 109.46817 * 296.04598 * 1 2 3 30 30 H 1.09010 * 109.47310 * 56.04030 * 1 2 3 31 31 H 1.08995 * 109.48043 * 176.04328 * 1 2 3 32 32 H 1.09003 * 109.46770 * 183.95944 * 3 2 1 33 33 H 1.09000 * 109.47129 * 303.95525 * 3 2 1 34 34 H 1.09002 * 109.46944 * 63.95487 * 3 2 1 35 35 H 1.09001 * 109.47325 * 306.03742 * 4 2 1 36 36 H 1.09006 * 109.46886 * 186.04607 * 4 2 1 37 37 H 1.09001 * 109.47282 * 59.99333 * 5 4 2 38 38 H 1.09006 * 109.47162 * 300.00055 * 5 4 2 39 39 H 1.08994 * 109.47846 * 59.99612 * 6 5 4 40 40 H 1.09005 * 109.46878 * 299.99481 * 6 5 4 41 41 H 0.97003 * 119.99653 * 359.97438 * 9 7 6 42 42 H 1.09000 * 110.48694 * 25.34120 * 12 10 9 43 43 H 1.08995 * 110.48768 * 147.85385 * 12 10 9 44 44 H 1.08995 * 112.94512 * 170.35499 * 16 15 13 45 45 H 1.09001 * 113.76731 * 336.34478 * 17 16 15 46 46 H 1.08995 * 113.76774 * 107.74899 * 17 16 15 47 47 H 0.96996 * 120.00297 * 180.02562 * 22 21 19 48 48 H 1.08999 * 113.77015 * 221.14747 * 27 18 17 49 49 H 1.08995 * 113.77102 * 89.75412 * 27 18 17 50 50 H 1.09002 * 110.24468 * 258.00978 * 28 15 13 51 51 H 1.09002 * 110.24463 * 136.09736 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 1.6314 -2.2426 0.9702 6 6 2.1791 -3.0404 2.1553 7 6 1.8211 -4.4949 1.9902 8 8 1.1896 -4.8577 1.0204 9 7 2.2026 -5.3926 2.9203 10 6 1.8541 -6.8065 2.7601 11 1 1.8076 -7.0777 1.7054 12 6 0.5224 -7.1334 3.4747 13 6 0.9452 -7.6133 4.8457 14 8 0.2110 -7.7041 5.8068 15 7 2.2549 -7.9246 4.8446 16 6 2.9921 -8.4127 6.0127 17 6 2.1893 -9.3931 6.8870 18 7 2.7514 -8.6624 8.0425 19 6 2.9931 -8.9796 9.3525 20 1 3.4265 -8.2450 10.0149 21 6 2.6808 -10.2455 9.8289 22 7 2.1521 -11.1406 9.0218 23 14 3.0112 -10.6785 11.6158 24 1 3.6047 -9.5063 12.3077 25 1 1.7356 -11.0506 12.2789 26 1 3.9553 -11.8229 11.6814 27 6 2.9494 -7.4550 7.2172 28 6 2.8496 -7.7108 3.5200 29 1 -0.3633 0.4513 0.9233 30 1 -0.3634 0.5741 -0.8524 31 1 -0.3635 -1.0251 -0.0709 32 1 3.0828 1.3431 -0.0710 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5611 -0.3873 2.0628 36 1 3.0797 -0.6612 1.1755 37 1 2.0656 -2.6214 0.0450 38 1 0.5470 -2.3475 0.9322 39 1 1.7445 -2.6616 3.0803 40 1 3.2634 -2.9356 2.1937 41 1 2.7080 -5.1025 3.6958 42 1 -0.0957 -6.2394 3.5573 43 1 -0.0136 -7.9188 2.9419 44 1 3.9941 -8.7638 5.7665 45 1 1.1090 -9.2894 6.7849 46 1 2.5277 -10.4265 6.8125 47 1 1.9336 -12.0250 9.3549 48 1 3.8935 -6.9439 7.4058 49 1 2.0930 -6.7808 7.2123 50 1 2.9668 -8.6623 3.0011 51 1 3.8144 -7.2127 3.6157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108566017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:10 Heat of formation + Delta-G solvation = -29.948381 kcal Electronic energy + Delta-G solvation = -29358.424658 eV Core-core repulsion = 25293.767970 eV Total energy + Delta-G solvation = -4064.656688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.90414 -40.57717 -38.96981 -38.52492 -37.59034 -35.07749 -34.26118 -33.99721 -31.70098 -29.24227 -28.81842 -28.46061 -27.86572 -26.60705 -25.26866 -24.38827 -22.62162 -22.09043 -21.72258 -21.23994 -19.72862 -18.80193 -18.14711 -17.82930 -17.66286 -16.96403 -16.91047 -16.41864 -16.30075 -16.00354 -15.75836 -15.55820 -15.50155 -15.10842 -14.82499 -14.61770 -14.47339 -14.21232 -14.04203 -13.42798 -13.40824 -13.28533 -13.17388 -13.15287 -12.86299 -12.75652 -12.75411 -12.67573 -12.55717 -12.45569 -12.26240 -12.17441 -12.00787 -11.85133 -11.52475 -11.50704 -11.07160 -10.84983 -10.63092 -10.07985 -9.54770 -9.28847 -8.94220 -7.93122 -5.27594 1.42726 1.45421 1.55503 1.60897 1.69589 1.98965 2.17366 2.48062 3.07274 3.25382 3.37174 3.47204 3.49146 3.79795 3.80730 3.88764 4.02654 4.16087 4.24802 4.27155 4.28110 4.44587 4.52887 4.53503 4.56980 4.63724 4.68501 4.70089 4.72615 4.78416 4.79486 4.82899 4.84942 4.92122 4.93985 5.04119 5.04467 5.22133 5.23469 5.23844 5.38514 5.47928 5.51027 5.86248 5.89889 6.09477 6.13971 6.27369 6.56683 6.87864 7.25775 7.29103 7.57318 8.52705 9.24364 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.001874 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.606179 B =14936.534610 C =15531.138244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.566 5.566 3 C 0.024 3.976 4 C 0.056 3.944 5 C -0.095 4.095 6 C -0.134 4.134 7 C 0.516 3.484 8 O -0.577 6.577 9 N -0.715 5.715 10 C 0.146 3.854 11 H 0.130 0.870 12 C -0.155 4.155 13 C 0.502 3.498 14 O -0.576 6.576 15 N -0.606 5.606 16 C 0.138 3.862 17 C 0.146 3.854 18 N -0.636 5.636 19 C -0.235 4.235 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.955 5.955 23 Si 0.984 3.016 24 H -0.262 1.262 25 H -0.297 1.297 26 H -0.286 1.286 27 C 0.116 3.884 28 C 0.096 3.904 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.414 0.586 42 H 0.095 0.905 43 H 0.124 0.876 44 H 0.137 0.863 45 H 0.020 0.980 46 H 0.040 0.960 47 H 0.248 0.752 48 H 0.072 0.928 49 H 0.023 0.977 50 H 0.107 0.893 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.944 21.602 -21.666 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.290 5.290 3 C -0.124 4.124 4 C -0.072 4.072 5 C -0.133 4.133 6 C -0.174 4.174 7 C 0.305 3.695 8 O -0.456 6.456 9 N -0.367 5.367 10 C 0.040 3.960 11 H 0.148 0.852 12 C -0.197 4.197 13 C 0.291 3.709 14 O -0.455 6.455 15 N -0.339 5.339 16 C 0.034 3.966 17 C 0.019 3.981 18 N -0.362 5.362 19 C -0.363 4.363 20 H 0.105 0.895 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.811 3.189 24 H -0.186 1.186 25 H -0.225 1.225 26 H -0.213 1.213 27 C -0.010 4.010 28 C -0.026 4.026 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.251 0.749 42 H 0.114 0.886 43 H 0.142 0.858 44 H 0.155 0.845 45 H 0.038 0.962 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.041 0.959 50 H 0.125 0.875 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.363 20.881 -21.961 30.616 hybrid contribution -0.735 -0.213 2.414 2.532 sum 3.628 20.668 -19.547 28.678 Atomic orbital electron populations 1.22445 0.87258 1.02337 1.00742 1.61963 1.08451 1.14776 1.43843 1.22419 1.01198 0.87991 1.00813 1.22168 1.00927 0.92900 0.91187 1.21224 1.00833 0.93544 0.97715 1.21656 1.05140 0.89353 1.01267 1.21183 0.77735 0.89211 0.81397 1.90711 1.41217 1.81623 1.32096 1.46035 1.57616 1.06982 1.26112 1.21769 0.91632 0.81277 1.01347 0.85215 1.22779 1.00133 1.04146 0.92631 1.21593 0.82205 0.76479 0.90645 1.90758 1.58021 1.55404 1.41359 1.48523 1.09614 1.64531 1.11274 1.23352 0.96499 0.94662 0.82081 1.22597 0.95609 0.95605 0.84250 1.46155 1.72054 1.11142 1.06876 1.19485 1.34224 0.96994 0.85624 0.89505 1.25730 1.01513 0.96449 1.02625 1.70049 1.49381 1.05063 1.35888 0.84938 0.76810 0.78125 0.78991 1.18573 1.22451 1.21256 1.22990 0.98540 0.90625 0.88887 1.22686 0.97695 1.01151 0.81084 0.95472 0.90893 0.91637 0.90607 0.90973 0.95436 0.94311 0.89393 0.91947 0.92891 0.87292 0.85867 0.74912 0.88631 0.85778 0.84510 0.96219 0.94168 0.94302 0.91020 0.95903 0.87467 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 127.69 1.19 1.45 16 2 N -0.57 -7.54 5.02 -948.84 -4.76 -12.31 16 3 C 0.02 0.23 9.57 127.69 1.22 1.45 16 4 C 0.06 0.61 4.96 86.30 0.43 1.04 16 5 C -0.09 -1.26 4.43 30.59 0.14 -1.13 16 6 C -0.13 -1.27 5.70 29.85 0.17 -1.10 16 7 C 0.52 8.16 7.83 87.66 0.69 8.85 16 8 O -0.58 -13.90 15.62 -3.03 -0.05 -13.95 16 9 N -0.72 -9.30 5.12 -437.53 -2.24 -11.55 16 10 C 0.15 2.19 3.53 46.05 0.16 2.36 16 11 H 0.13 1.80 7.54 -2.39 -0.02 1.78 16 12 C -0.16 -3.41 6.59 30.59 0.20 -3.21 16 13 C 0.50 16.41 7.43 87.87 0.65 17.06 16 14 O -0.58 -26.54 14.64 -3.05 -0.04 -26.59 16 15 N -0.61 -16.57 3.16 -799.40 -2.53 -19.09 16 16 C 0.14 4.89 4.81 46.75 0.22 5.11 16 17 C 0.15 7.45 6.90 86.44 0.60 8.05 16 18 N -0.64 -34.33 3.70 -716.69 -2.65 -36.98 16 19 C -0.23 -13.72 10.70 84.03 0.90 -12.82 16 20 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 21 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 22 N -0.96 -60.45 11.39 21.65 0.25 -60.20 16 23 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 27 C 0.12 4.76 8.44 86.48 0.73 5.49 16 28 C 0.10 1.42 6.97 86.83 0.61 2.02 16 29 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.80 8.12 -2.38 -0.02 0.78 16 31 H 0.06 0.93 6.47 -2.39 -0.02 0.92 16 32 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 33 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 34 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.04 0.40 8.12 -2.39 -0.02 0.38 16 36 H 0.09 0.74 8.06 -2.38 -0.02 0.72 16 37 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 38 H 0.05 0.90 6.51 -2.38 -0.02 0.88 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.41 3.96 8.66 -92.71 -0.80 3.16 16 42 H 0.10 2.23 8.09 -2.39 -0.02 2.21 16 43 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.14 4.08 8.14 -2.39 -0.02 4.06 16 45 H 0.02 1.16 5.73 -2.39 -0.01 1.15 16 46 H 0.04 2.26 7.17 -2.39 -0.02 2.24 16 47 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.02 1.03 7.26 -2.39 -0.02 1.01 16 50 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.11 1.10 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -86.71 407.63 -1.51 -88.22 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.12 Total: 12.39 kcal Atomic # 6 Polarization: 22.52 SS G_CDS: 8.37 Total: 30.89 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -11.94 Total: -140.13 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.09 Total: -40.54 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -86.71 -1.51 -88.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108566017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.271 kcal (2) G-P(sol) polarization free energy of solvation -86.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds