Wall clock time and date at job start Tue Mar 31 2020 20:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99501 * 2 1 4 4 C 1.46901 * 111.00112 * 123.94867 * 2 1 3 5 5 C 1.52997 * 109.46708 * 66.05042 * 4 2 1 6 6 C 1.50703 * 109.46945 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99972 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00377 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00492 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.54398 * 36.92764 * 9 8 6 11 11 C 1.54837 * 110.61399 * 159.95927 * 9 8 6 12 12 C 1.55871 * 103.50933 * 117.40460 * 11 9 8 13 13 H 1.08997 * 115.89408 * 159.82320 * 12 11 9 14 14 C 1.55843 * 105.72384 * 289.26790 * 12 11 9 15 15 C 1.54838 * 103.52010 * 71.48473 * 14 12 11 16 16 C 1.55847 * 103.51900 * 0.02562 * 15 14 12 17 17 H 1.09000 * 115.58190 * 159.64635 * 16 15 14 18 18 N 1.50644 * 101.73246 * 33.22210 * 16 15 14 19 19 C 1.46909 * 110.99936 * 189.57316 * 18 16 15 20 20 C 1.50698 * 109.47294 * 170.00052 * 19 18 16 21 21 O 1.21295 * 119.99788 * 0.02562 * 20 19 18 22 22 N 1.34781 * 119.99996 * 179.97438 * 20 19 18 23 23 C 1.37096 * 119.99878 * 180.02562 * 22 20 19 24 24 H 1.07998 * 119.99883 * 0.02562 * 23 22 20 25 25 C 1.38950 * 119.99597 * 180.02562 * 23 22 20 26 26 N 1.31404 * 120.00054 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99572 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47445 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47083 * 120.00241 * 27 25 23 30 30 H 1.48500 * 109.47308 * 240.00013 * 27 25 23 31 31 H 1.08999 * 109.46770 * 296.04619 * 1 2 3 32 32 H 1.08999 * 109.47268 * 56.04894 * 1 2 3 33 33 H 1.09004 * 109.46783 * 176.04840 * 1 2 3 34 34 H 1.09003 * 109.46897 * 183.95818 * 3 2 1 35 35 H 1.09000 * 109.46863 * 303.94858 * 3 2 1 36 36 H 1.08996 * 109.47632 * 63.95489 * 3 2 1 37 37 H 1.09005 * 109.47090 * 306.04991 * 4 2 1 38 38 H 1.09002 * 109.46818 * 186.04755 * 4 2 1 39 39 H 1.09002 * 109.47246 * 299.99450 * 5 4 2 40 40 H 1.08998 * 109.47782 * 60.00060 * 5 4 2 41 41 H 0.97002 * 119.99724 * 359.97438 * 8 6 5 42 42 H 1.08999 * 110.61227 * 237.01794 * 11 9 8 43 43 H 1.09003 * 110.61318 * 0.02562 * 11 9 8 44 44 H 1.09000 * 110.61342 * 312.97615 * 14 12 11 45 45 H 1.09004 * 110.74377 * 190.05868 * 14 12 11 46 46 H 1.08994 * 110.61644 * 241.48677 * 15 14 12 47 47 H 1.09007 * 110.60824 * 118.50968 * 15 14 12 48 48 H 1.08996 * 109.47002 * 290.00386 * 19 18 16 49 49 H 1.09001 * 109.46888 * 49.99666 * 19 18 16 50 50 H 0.97000 * 119.99801 * 0.02562 * 22 20 19 51 51 H 0.97007 * 119.99494 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6316 -2.2425 0.9704 6 6 2.1722 -3.0283 2.1372 7 8 2.7883 -2.4630 3.0157 8 7 1.9710 -4.3593 2.2044 9 6 2.4970 -5.1233 3.3383 10 1 2.4213 -4.5436 4.2582 11 6 1.7524 -6.4737 3.4782 12 6 2.8737 -7.5328 3.2535 13 1 2.6669 -8.5330 3.6342 14 6 3.2355 -7.4503 1.7399 15 6 3.9835 -6.1000 1.6196 16 6 3.9744 -5.5473 3.0768 17 1 4.7274 -4.7909 3.2980 18 7 4.0583 -6.8153 3.8858 19 6 3.8362 -6.5450 5.3127 20 6 3.6829 -7.8487 6.0529 21 8 3.7523 -8.8995 5.4512 22 7 3.4696 -7.8469 7.3838 23 6 3.3307 -9.0329 8.0573 24 1 3.3925 -9.9686 7.5215 25 6 3.1103 -9.0310 9.4292 26 7 3.0345 -7.8924 10.0809 27 14 2.9216 -10.6470 10.3470 28 1 3.0458 -11.7766 9.3911 29 1 3.9810 -10.7549 11.3821 30 1 1.5875 -10.6940 10.9975 31 1 -0.3633 0.4512 0.9233 32 1 -0.3634 0.5739 -0.8524 33 1 -0.3633 -1.0253 -0.0708 34 1 3.0827 1.3434 -0.0709 35 1 1.5897 1.9163 -0.8525 36 1 1.7043 1.8725 0.9232 37 1 1.5611 -0.3871 2.0629 38 1 3.0798 -0.6609 1.1756 39 1 0.5473 -2.3474 0.9324 40 1 2.0659 -2.6213 0.0453 41 1 1.4779 -4.8114 1.5020 42 1 1.3073 -6.5656 4.4689 43 1 0.9922 -6.5747 2.7035 44 1 2.3326 -7.4445 1.1293 45 1 3.8862 -8.2764 1.4529 46 1 3.4515 -5.4249 0.9494 47 1 5.0059 -6.2570 1.2755 48 1 4.6876 -5.9964 5.7154 49 1 2.9308 -5.9501 5.4331 50 1 3.4145 -7.0065 7.8650 51 1 2.8803 -7.8912 11.0386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109670251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:34 Heat of formation + Delta-G solvation = -32.483442 kcal Electronic energy + Delta-G solvation = -30193.336963 eV Core-core repulsion = 26128.570347 eV Total energy + Delta-G solvation = -4064.766617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.21229 -39.48243 -37.88354 -37.55778 -34.38087 -33.86047 -31.94437 -31.79191 -31.12270 -29.72449 -28.49059 -27.98780 -26.48479 -25.30506 -24.13681 -22.30950 -21.71367 -20.66804 -20.16766 -19.39293 -18.93038 -17.80866 -17.48216 -16.56698 -16.28949 -15.93895 -15.72532 -15.47864 -15.23445 -15.09768 -14.81142 -14.46230 -14.17587 -13.79263 -13.57757 -13.36284 -12.89826 -12.78614 -12.77811 -12.61729 -12.21013 -12.14042 -12.06647 -11.92448 -11.85078 -11.74633 -11.66688 -11.47843 -11.29442 -11.27828 -11.05509 -10.72975 -10.65840 -10.33922 -10.21891 -10.12784 -9.97682 -9.49556 -9.30862 -8.79366 -8.39214 -8.04826 -7.93831 -6.40939 -3.81754 2.48340 2.90100 3.16432 3.26976 3.33961 3.64429 3.90841 3.99365 4.21274 4.46791 4.52369 4.62816 4.69509 4.75777 4.81360 4.84083 4.98408 5.05291 5.12613 5.17304 5.19762 5.21780 5.24950 5.25757 5.33884 5.43748 5.47185 5.49389 5.50516 5.55515 5.63432 5.69890 5.71618 5.88612 5.97580 6.00595 6.02348 6.20738 6.25853 6.29432 6.41136 6.54678 6.57314 6.58648 6.88644 7.24575 7.33420 7.55908 8.06942 8.07781 8.62268 9.18660 9.55426 10.06816 10.76817 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.002215 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.243070 B =12636.112907 C =13489.673601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.550 5.550 3 C 0.025 3.975 4 C 0.069 3.931 5 C -0.137 4.137 6 C 0.512 3.488 7 O -0.539 6.539 8 N -0.715 5.715 9 C 0.112 3.888 10 H 0.092 0.908 11 C -0.161 4.161 12 C 0.058 3.942 13 H 0.136 0.864 14 C -0.116 4.116 15 C -0.111 4.111 16 C 0.035 3.965 17 H 0.112 0.888 18 N -0.466 5.466 19 C 0.022 3.978 20 C 0.446 3.554 21 O -0.581 6.581 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.104 0.896 25 C 0.021 3.979 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.027 0.973 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.399 0.601 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.055 0.945 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 14.502 -20.943 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.059 4.059 5 C -0.178 4.178 6 C 0.298 3.702 7 O -0.416 6.416 8 N -0.367 5.367 9 C 0.005 3.995 10 H 0.110 0.890 11 C -0.200 4.200 12 C -0.049 4.049 13 H 0.153 0.847 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.076 4.076 17 H 0.129 0.871 18 N -0.189 5.189 19 C -0.110 4.110 20 C 0.231 3.769 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.208 1.208 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.234 0.766 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.108 0.892 49 H 0.073 0.927 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.630 13.687 -20.916 25.421 hybrid contribution -1.502 0.510 1.535 2.207 sum -6.132 14.197 -19.381 24.795 Atomic orbital electron populations 1.22471 0.87517 1.02380 1.00639 1.61982 1.08000 1.14146 1.43245 1.22371 1.00982 0.88432 1.00561 1.21836 1.01211 0.91497 0.91344 1.21633 1.02645 0.95662 0.97843 1.20630 0.79752 0.82266 0.87547 1.90728 1.40843 1.69715 1.40320 1.46089 1.57337 1.07650 1.25603 1.22815 0.94678 0.92213 0.89758 0.88964 1.23538 0.99224 0.94232 1.03047 1.24882 0.87373 0.98930 0.93742 0.84669 1.22595 0.99644 0.97755 0.95360 1.22526 1.00917 0.96362 0.95157 1.24807 0.94950 0.92915 0.94887 0.87057 1.67853 1.38608 1.11499 1.00905 1.22149 1.01481 0.97464 0.89858 1.19682 0.84233 0.89901 0.83055 1.90476 1.55976 1.32797 1.67321 1.41879 1.62756 1.09532 1.05840 1.19740 1.45859 0.86805 0.90339 0.87854 1.25270 0.97419 0.98595 0.96756 1.69625 1.49691 1.25354 1.09553 0.85807 0.77720 0.81589 0.79260 1.19226 1.20751 1.20820 0.95484 0.91324 0.91146 0.91138 0.91286 0.95480 0.93831 0.89800 0.89018 0.88002 0.76604 0.90076 0.90741 0.91872 0.90914 0.91496 0.91319 0.89192 0.92691 0.77483 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.32 60.07 0.56 0.67 16 2 N -0.55 -4.19 5.02 -251.25 -1.26 -5.45 16 3 C 0.02 0.16 9.57 60.07 0.57 0.74 16 4 C 0.07 0.60 4.25 -3.82 -0.02 0.59 16 5 C -0.14 -1.02 5.62 -27.88 -0.16 -1.18 16 6 C 0.51 5.48 7.83 -10.98 -0.09 5.39 16 7 O -0.54 -8.08 15.71 5.55 0.09 -7.99 16 8 N -0.71 -6.82 3.60 -51.37 -0.18 -7.00 16 9 C 0.11 1.39 2.26 -65.41 -0.15 1.25 16 10 H 0.09 1.36 6.75 -51.93 -0.35 1.01 16 11 C -0.16 -2.06 5.40 -24.23 -0.13 -2.20 16 12 C 0.06 0.89 4.20 -61.61 -0.26 0.63 16 13 H 0.14 2.51 6.41 -51.93 -0.33 2.18 16 14 C -0.12 -1.37 6.46 -24.24 -0.16 -1.53 16 15 C -0.11 -1.26 6.32 -24.24 -0.15 -1.42 16 16 C 0.03 0.47 4.79 -62.53 -0.30 0.17 16 17 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 18 N -0.47 -7.86 5.48 -205.61 -1.13 -8.99 16 19 C 0.02 0.41 5.24 -4.97 -0.03 0.39 16 20 C 0.45 10.50 7.55 -10.98 -0.08 10.42 16 21 O -0.58 -15.35 13.83 5.54 0.08 -15.28 16 22 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 23 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 24 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 26 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 27 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 31 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.07 0.38 6.47 -51.93 -0.34 0.04 16 34 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 35 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.08 0.81 8.02 -51.93 -0.42 0.40 16 39 H 0.09 0.54 6.55 -51.93 -0.34 0.20 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.40 2.73 8.02 -40.82 -0.33 2.40 16 42 H 0.08 1.18 7.37 -51.93 -0.38 0.80 16 43 H 0.07 0.76 7.35 -51.93 -0.38 0.38 16 44 H 0.06 0.59 7.84 -51.93 -0.41 0.19 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.07 0.62 6.47 -51.93 -0.34 0.29 16 47 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 48 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 49 H 0.06 0.94 4.88 -51.93 -0.25 0.69 16 50 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 51 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -32.75 395.77 -9.76 -42.51 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -8.34 Total: 12.58 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.62 Total: 5.96 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -1.91 Total: -59.85 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.16 Total: -23.27 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.75 -9.76 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109670251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.030 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds