Wall clock time and date at job start Tue Mar 31 2020 20:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99501 * 2 1 4 4 C 1.46901 * 111.00112 * 123.94867 * 2 1 3 5 5 C 1.52997 * 109.46708 * 66.05042 * 4 2 1 6 6 C 1.50703 * 109.46945 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99972 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00377 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00492 * 179.97438 * 8 6 5 10 10 H 1.08999 * 110.54398 * 36.92764 * 9 8 6 11 11 C 1.54837 * 110.61399 * 159.95927 * 9 8 6 12 12 C 1.55871 * 103.50933 * 117.40460 * 11 9 8 13 13 H 1.08997 * 115.89408 * 159.82320 * 12 11 9 14 14 C 1.55843 * 105.72384 * 289.26790 * 12 11 9 15 15 C 1.54838 * 103.52010 * 71.48473 * 14 12 11 16 16 C 1.55847 * 103.51900 * 0.02562 * 15 14 12 17 17 H 1.09000 * 115.58190 * 159.64635 * 16 15 14 18 18 N 1.50644 * 101.73246 * 33.22210 * 16 15 14 19 19 C 1.46909 * 110.99936 * 189.57316 * 18 16 15 20 20 C 1.50698 * 109.47294 * 170.00052 * 19 18 16 21 21 O 1.21295 * 119.99788 * 0.02562 * 20 19 18 22 22 N 1.34781 * 119.99996 * 179.97438 * 20 19 18 23 23 C 1.37096 * 119.99878 * 180.02562 * 22 20 19 24 24 H 1.07998 * 119.99883 * 0.02562 * 23 22 20 25 25 C 1.38950 * 119.99597 * 180.02562 * 23 22 20 26 26 N 1.31404 * 120.00054 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99572 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47445 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47083 * 120.00241 * 27 25 23 30 30 H 1.48500 * 109.47308 * 240.00013 * 27 25 23 31 31 H 1.08999 * 109.46770 * 296.04619 * 1 2 3 32 32 H 1.08999 * 109.47268 * 56.04894 * 1 2 3 33 33 H 1.09004 * 109.46783 * 176.04840 * 1 2 3 34 34 H 1.09003 * 109.46897 * 183.95818 * 3 2 1 35 35 H 1.09000 * 109.46863 * 303.94858 * 3 2 1 36 36 H 1.08996 * 109.47632 * 63.95489 * 3 2 1 37 37 H 1.09005 * 109.47090 * 306.04991 * 4 2 1 38 38 H 1.09002 * 109.46818 * 186.04755 * 4 2 1 39 39 H 1.09002 * 109.47246 * 299.99450 * 5 4 2 40 40 H 1.08998 * 109.47782 * 60.00060 * 5 4 2 41 41 H 0.97002 * 119.99724 * 359.97438 * 8 6 5 42 42 H 1.08999 * 110.61227 * 237.01794 * 11 9 8 43 43 H 1.09003 * 110.61318 * 0.02562 * 11 9 8 44 44 H 1.09000 * 110.61342 * 312.97615 * 14 12 11 45 45 H 1.09004 * 110.74377 * 190.05868 * 14 12 11 46 46 H 1.08994 * 110.61644 * 241.48677 * 15 14 12 47 47 H 1.09007 * 110.60824 * 118.50968 * 15 14 12 48 48 H 1.08996 * 109.47002 * 290.00386 * 19 18 16 49 49 H 1.09001 * 109.46888 * 49.99666 * 19 18 16 50 50 H 0.97000 * 119.99801 * 0.02562 * 22 20 19 51 51 H 0.97007 * 119.99494 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6316 -2.2425 0.9704 6 6 2.1722 -3.0283 2.1372 7 8 2.7883 -2.4630 3.0157 8 7 1.9710 -4.3593 2.2044 9 6 2.4970 -5.1233 3.3383 10 1 2.4213 -4.5436 4.2582 11 6 1.7524 -6.4737 3.4782 12 6 2.8737 -7.5328 3.2535 13 1 2.6669 -8.5330 3.6342 14 6 3.2355 -7.4503 1.7399 15 6 3.9835 -6.1000 1.6196 16 6 3.9744 -5.5473 3.0768 17 1 4.7274 -4.7909 3.2980 18 7 4.0583 -6.8153 3.8858 19 6 3.8362 -6.5450 5.3127 20 6 3.6829 -7.8487 6.0529 21 8 3.7523 -8.8995 5.4512 22 7 3.4696 -7.8469 7.3838 23 6 3.3307 -9.0329 8.0573 24 1 3.3925 -9.9686 7.5215 25 6 3.1103 -9.0310 9.4292 26 7 3.0345 -7.8924 10.0809 27 14 2.9216 -10.6470 10.3470 28 1 3.0458 -11.7766 9.3911 29 1 3.9810 -10.7549 11.3821 30 1 1.5875 -10.6940 10.9975 31 1 -0.3633 0.4512 0.9233 32 1 -0.3634 0.5739 -0.8524 33 1 -0.3633 -1.0253 -0.0708 34 1 3.0827 1.3434 -0.0709 35 1 1.5897 1.9163 -0.8525 36 1 1.7043 1.8725 0.9232 37 1 1.5611 -0.3871 2.0629 38 1 3.0798 -0.6609 1.1756 39 1 0.5473 -2.3474 0.9324 40 1 2.0659 -2.6213 0.0453 41 1 1.4779 -4.8114 1.5020 42 1 1.3073 -6.5656 4.4689 43 1 0.9922 -6.5747 2.7035 44 1 2.3326 -7.4445 1.1293 45 1 3.8862 -8.2764 1.4529 46 1 3.4515 -5.4249 0.9494 47 1 5.0059 -6.2570 1.2755 48 1 4.6876 -5.9964 5.7154 49 1 2.9308 -5.9501 5.4331 50 1 3.4145 -7.0065 7.8650 51 1 2.8803 -7.8912 11.0386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109670251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:33 Heat of formation + Delta-G solvation = -58.790289 kcal Electronic energy + Delta-G solvation = -30194.477714 eV Core-core repulsion = 26128.570347 eV Total energy + Delta-G solvation = -4065.907367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.32985 -40.49299 -39.63792 -38.23804 -36.02447 -35.26130 -33.46972 -32.92836 -32.47280 -30.80048 -29.54396 -28.46421 -28.09858 -26.13955 -25.81083 -23.20156 -22.48939 -21.83212 -21.26419 -20.62418 -20.43251 -19.77313 -18.32763 -17.79588 -17.34299 -17.07411 -16.99292 -16.57867 -16.40244 -16.05067 -15.85827 -15.68013 -15.48889 -15.41993 -14.61764 -14.49175 -14.16033 -13.86314 -13.77302 -13.60347 -13.37236 -13.28805 -13.23084 -13.00876 -12.78531 -12.75108 -12.67130 -12.59755 -12.52785 -12.41206 -12.38058 -12.12154 -11.89998 -11.85414 -11.71563 -11.47451 -11.13730 -10.90177 -10.35624 -10.24658 -10.02790 -9.37214 -9.32516 -8.48229 -5.97215 1.34932 1.40028 1.54668 1.65282 2.00011 2.09747 2.26921 2.75479 3.06995 3.17988 3.22357 3.55583 3.60744 3.78968 3.84058 3.98623 4.10913 4.12849 4.19949 4.21903 4.29049 4.31161 4.38579 4.43002 4.50006 4.50905 4.53303 4.62111 4.67391 4.72158 4.76033 4.81262 4.91896 4.94781 4.98037 5.01806 5.03783 5.09590 5.22723 5.26546 5.33817 5.39402 5.48843 5.72919 5.84192 5.99466 6.05303 6.06076 6.57130 6.57839 7.10419 7.29052 7.53127 8.08085 8.69598 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.002215 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.243070 B =12636.112907 C =13489.673601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.553 5.553 3 C 0.022 3.978 4 C 0.072 3.928 5 C -0.124 4.124 6 C 0.512 3.488 7 O -0.587 6.587 8 N -0.699 5.699 9 C 0.124 3.876 10 H 0.067 0.933 11 C -0.150 4.150 12 C 0.046 3.954 13 H 0.096 0.904 14 C -0.105 4.105 15 C -0.101 4.101 16 C 0.033 3.967 17 H 0.103 0.897 18 N -0.491 5.491 19 C 0.037 3.963 20 C 0.446 3.554 21 O -0.611 6.611 22 N -0.575 5.575 23 C -0.330 4.330 24 H 0.081 0.919 25 C -0.016 4.016 26 N -0.922 5.922 27 Si 0.995 3.005 28 H -0.271 1.271 29 H -0.272 1.272 30 H -0.270 1.270 31 H 0.020 0.980 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.021 0.979 37 H 0.023 0.977 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.418 0.582 42 H 0.057 0.943 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.068 0.932 50 H 0.394 0.606 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 15.013 -23.299 28.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.277 5.277 3 C -0.126 4.126 4 C -0.057 4.057 5 C -0.164 4.164 6 C 0.300 3.700 7 O -0.467 6.467 8 N -0.352 5.352 9 C 0.017 3.983 10 H 0.085 0.915 11 C -0.189 4.189 12 C -0.062 4.062 13 H 0.114 0.886 14 C -0.143 4.143 15 C -0.139 4.139 16 C -0.077 4.077 17 H 0.121 0.879 18 N -0.215 5.215 19 C -0.095 4.095 20 C 0.233 3.767 21 O -0.497 6.497 22 N -0.212 5.212 23 C -0.459 4.459 24 H 0.099 0.901 25 C -0.216 4.216 26 N -0.563 5.563 27 Si 0.819 3.181 28 H -0.196 1.196 29 H -0.197 1.197 30 H -0.196 1.196 31 H 0.038 0.962 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.257 0.743 42 H 0.076 0.924 43 H 0.128 0.872 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.086 0.914 48 H 0.113 0.887 49 H 0.086 0.914 50 H 0.227 0.773 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.013 14.208 -23.313 27.956 hybrid contribution -1.061 0.386 2.227 2.497 sum -7.073 14.594 -21.086 26.602 Atomic orbital electron populations 1.22561 0.86493 1.03393 1.00810 1.62035 1.08950 1.14446 1.42247 1.22431 1.01073 0.88221 1.00896 1.21740 1.00233 0.92696 0.91007 1.21593 1.03982 0.93967 0.96880 1.21230 0.78763 0.82347 0.87702 1.90724 1.43021 1.70629 1.42299 1.45885 1.56960 1.07293 1.25085 1.22424 0.94074 0.91840 0.89993 0.91488 1.23404 0.99144 0.93337 1.03002 1.24784 0.87914 0.97504 0.95971 0.88627 1.22578 1.01110 0.97688 0.92897 1.22530 1.01380 0.96319 0.93664 1.24835 0.95433 0.91500 0.95908 0.87947 1.67865 1.39975 1.13746 0.99894 1.21960 1.02290 0.94333 0.90944 1.20547 0.82195 0.91388 0.82534 1.90453 1.56761 1.34663 1.67855 1.41955 1.63626 1.08992 1.06589 1.19708 1.48062 0.86926 0.91230 0.90064 1.26092 0.96420 1.02109 0.96945 1.69696 1.49573 1.26988 1.10093 0.84839 0.78267 0.77239 0.77790 1.19585 1.19738 1.19551 0.96153 0.90200 0.89877 0.91255 0.89872 0.96045 0.95900 0.91336 0.86645 0.85682 0.74334 0.92446 0.87188 0.88198 0.91887 0.88471 0.91449 0.88667 0.91384 0.77297 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 127.69 1.19 1.34 16 2 N -0.55 -7.31 5.02 -948.82 -4.76 -12.07 16 3 C 0.02 0.26 9.57 127.69 1.22 1.48 16 4 C 0.07 1.15 4.25 86.30 0.37 1.52 16 5 C -0.12 -1.45 5.62 29.85 0.17 -1.28 16 6 C 0.51 9.84 7.83 87.66 0.69 10.52 16 7 O -0.59 -17.34 15.71 -3.05 -0.05 -17.39 16 8 N -0.70 -11.19 3.60 -434.84 -1.56 -12.76 16 9 C 0.12 2.93 2.26 46.62 0.11 3.04 16 10 H 0.07 1.97 6.75 -2.39 -0.02 1.96 16 11 C -0.15 -3.64 5.40 32.21 0.17 -3.47 16 12 C 0.05 1.39 4.20 45.82 0.19 1.58 16 13 H 0.10 3.70 6.41 -2.39 -0.02 3.68 16 14 C -0.10 -2.23 6.46 32.21 0.21 -2.02 16 15 C -0.10 -2.00 6.32 32.21 0.20 -1.80 16 16 C 0.03 0.87 4.79 46.17 0.22 1.09 16 17 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 18 N -0.49 -16.74 5.48 -804.43 -4.40 -21.15 16 19 C 0.04 1.40 5.24 85.55 0.45 1.85 16 20 C 0.45 21.95 7.55 87.66 0.66 22.61 16 21 O -0.61 -33.83 13.83 -3.08 -0.04 -33.87 16 22 N -0.57 -30.50 5.29 -306.98 -1.62 -32.13 16 23 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 24 H 0.08 4.97 7.16 -2.91 -0.02 4.94 16 25 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 26 N -0.92 -51.06 13.05 21.66 0.28 -50.77 16 27 Si 1.00 43.61 29.55 68.60 2.03 45.63 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 30 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 31 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.08 0.59 6.47 -2.38 -0.02 0.58 16 34 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 35 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 36 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.02 0.45 8.08 -2.38 -0.02 0.43 16 38 H 0.07 1.30 8.02 -2.39 -0.02 1.28 16 39 H 0.12 0.86 6.55 -2.39 -0.02 0.85 16 40 H 0.13 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.42 3.66 8.02 -92.71 -0.74 2.91 16 42 H 0.06 1.68 7.37 -2.39 -0.02 1.66 16 43 H 0.11 1.86 7.35 -2.39 -0.02 1.84 16 44 H 0.10 1.41 7.84 -2.39 -0.02 1.39 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.10 1.36 6.47 -2.39 -0.02 1.34 16 47 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 49 H 0.07 2.41 4.88 -2.39 -0.01 2.40 16 50 H 0.39 20.23 7.90 -92.71 -0.73 19.50 16 51 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -74.71 395.77 -3.53 -78.24 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: -0.52 Total: 38.46 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 7.13 Total: 17.81 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -12.07 Total: -128.87 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.09 Total: -51.26 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -74.71 -3.53 -78.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109670251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.448 kcal (2) G-P(sol) polarization free energy of solvation -74.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds