Wall clock time and date at job start Tue Mar 31 2020 21:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00037 * 2 1 4 4 O 1.21586 * 120.00039 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00184 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00063 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47190 * 180.02562 * 6 5 3 8 8 C 1.50693 * 109.47207 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00136 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00080 * 179.97438 * 8 7 6 11 11 C 1.48119 * 127.84127 * 359.97438 * 10 8 7 12 12 C 1.54331 * 104.69230 * 140.28883 * 11 10 8 13 13 H 1.09001 * 112.59821 * 262.02861 * 12 11 10 14 14 C 1.54169 * 109.65500 * 137.80055 * 12 11 10 15 15 C 1.54843 * 104.32556 * 223.42034 * 14 12 11 16 16 C 1.54840 * 102.73500 * 38.18879 * 15 14 12 17 17 C 1.54166 * 104.32903 * 321.81229 * 16 15 14 18 18 C 1.53005 * 111.81953 * 261.25095 * 17 16 15 19 19 N 1.46505 * 109.46904 * 298.97995 * 18 17 16 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 C 1.50619 * 127.74572 * 180.34211 * 10 8 7 29 29 H 1.08994 * 109.47304 * 300.00176 * 1 2 3 30 30 H 1.09001 * 109.46952 * 60.00001 * 1 2 3 31 31 H 1.09003 * 109.47116 * 179.97438 * 1 2 3 32 32 H 0.97005 * 120.00414 * 179.97438 * 2 1 3 33 33 H 0.97003 * 119.99560 * 0.02562 * 5 3 2 34 34 H 1.08992 * 109.47344 * 60.00642 * 6 5 3 35 35 H 1.08997 * 109.47175 * 300.00074 * 6 5 3 36 36 H 1.09005 * 109.47328 * 59.99395 * 7 6 5 37 37 H 1.09006 * 109.46611 * 300.00095 * 7 6 5 38 38 H 1.09005 * 110.39470 * 21.48933 * 11 10 8 39 39 H 1.08994 * 110.49098 * 259.14138 * 11 10 8 40 40 H 1.08999 * 110.46159 * 104.70976 * 14 12 11 41 41 H 1.08999 * 110.56878 * 342.18935 * 14 12 11 42 42 H 1.08994 * 110.75931 * 279.87537 * 15 14 12 43 43 H 1.09005 * 110.91542 * 156.56829 * 15 14 12 44 44 H 1.08998 * 110.46422 * 203.09931 * 16 15 14 45 45 H 1.08999 * 110.46501 * 80.52011 * 16 15 14 46 46 H 1.09003 * 109.46946 * 178.98754 * 18 17 16 47 47 H 1.08993 * 109.47679 * 58.98297 * 18 17 16 48 48 H 0.97000 * 119.99792 * 0.02562 * 19 18 17 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 50 50 H 1.09004 * 110.78240 * 101.35943 * 28 10 8 51 51 H 1.09001 * 111.15169 * 338.17597 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.2191 2.4360 0.0011 7 6 5.7234 2.1564 0.0010 8 6 6.4768 3.4615 0.0009 9 8 5.8704 4.5118 0.0005 10 7 7.8246 3.4615 0.0013 11 6 8.7333 2.2918 0.0024 12 6 9.8806 2.6866 -0.9513 13 1 9.7507 2.2793 -1.9540 14 6 11.2305 2.2518 -0.3466 15 6 12.1663 3.4613 -0.5892 16 6 11.2305 4.6710 -0.3474 17 6 9.8806 4.2358 -0.9518 18 6 9.6761 4.8066 -2.3566 19 7 9.6786 6.2703 -2.2941 20 6 9.5104 7.0047 -3.4375 21 1 9.3755 6.5049 -4.3854 22 6 9.5070 8.3915 -3.3774 23 7 9.6708 9.0006 -2.2222 24 14 9.2698 9.3933 -4.9362 25 1 7.9581 9.0574 -5.5457 26 1 9.3063 10.8403 -4.6049 27 1 10.3573 9.0785 -5.8972 28 6 8.7466 4.6525 0.0085 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8401 0.0004 33 1 3.9716 0.3272 0.0005 34 1 3.9555 3.0073 0.8911 35 1 3.9561 3.0077 -0.8888 36 1 5.9867 1.5851 -0.8893 37 1 5.9866 1.5844 0.8908 38 1 8.2157 1.4083 -0.3715 39 1 9.1190 2.1092 1.0053 40 1 11.6101 1.3675 -0.8585 41 1 11.1271 2.0580 0.7210 42 1 12.5406 3.4610 -1.6129 43 1 12.9920 3.4634 0.1225 44 1 11.6101 5.5549 -0.8598 45 1 11.1253 4.8640 0.7202 46 1 8.7214 4.4616 -2.7535 47 1 10.4832 4.4693 -3.0069 48 1 9.7994 6.7192 -1.4427 49 1 9.6688 9.9697 -2.1803 50 1 9.1418 4.8297 1.0088 51 1 8.2412 5.5434 -0.3645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112341568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:59 Heat of formation + Delta-G solvation = -51.062642 kcal Electronic energy + Delta-G solvation = -29949.485223 eV Core-core repulsion = 25883.912951 eV Total energy + Delta-G solvation = -4065.572271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.48736 -40.09081 -38.65709 -35.51919 -34.78311 -34.70833 -34.28198 -31.72595 -31.12814 -29.74430 -29.03868 -27.00765 -25.67826 -25.51900 -23.89115 -22.97951 -22.01784 -21.22340 -20.34269 -19.36136 -18.66245 -18.24100 -17.41184 -16.88876 -16.32218 -16.14115 -15.73577 -15.55827 -15.05859 -14.94306 -14.58342 -14.49677 -14.31816 -13.84177 -13.64564 -13.36134 -13.25122 -13.03243 -12.92788 -12.66911 -12.55389 -12.27337 -12.11109 -11.88746 -11.68354 -11.45620 -11.19676 -10.95844 -10.78784 -10.77469 -10.55866 -10.53346 -10.47322 -10.34234 -10.21850 -9.94030 -9.65172 -9.57755 -9.56657 -9.09785 -8.81676 -8.56690 -6.86358 -5.70765 -2.99017 2.37106 2.75196 3.00967 3.05235 3.48942 3.53619 3.54408 3.97859 4.37350 4.48036 4.54532 4.63661 4.73308 4.82225 4.85923 4.87306 5.10426 5.19814 5.22740 5.30378 5.34087 5.41198 5.48156 5.54233 5.57665 5.65239 5.66444 5.73303 5.79761 5.85251 5.87372 5.93833 6.08172 6.12339 6.15874 6.17927 6.22152 6.23869 6.42394 6.48040 6.49043 6.59798 6.72345 6.78536 6.86043 7.68610 7.73623 7.74867 8.28169 8.37797 8.47953 9.59303 10.15952 10.50675 11.52027 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.002717 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.582333 B =10303.120748 C =12547.748539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.700 3.300 4 O -0.583 6.583 5 N -0.747 5.747 6 C 0.152 3.848 7 C -0.147 4.147 8 C 0.534 3.466 9 O -0.528 6.528 10 N -0.625 5.625 11 C 0.109 3.891 12 C -0.098 4.098 13 H 0.088 0.912 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.115 4.115 17 C -0.075 4.075 18 C 0.174 3.826 19 N -0.728 5.728 20 C -0.239 4.239 21 H 0.068 0.932 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.116 3.884 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.396 0.604 33 H 0.394 0.606 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.017 0.983 47 H 0.021 0.979 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.070 0.930 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 -26.427 8.534 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.409 5.409 3 C 0.400 3.600 4 O -0.460 6.460 5 N -0.403 5.403 6 C 0.027 3.973 7 C -0.187 4.187 8 C 0.321 3.679 9 O -0.404 6.404 10 N -0.360 5.360 11 C -0.014 4.014 12 C -0.118 4.118 13 H 0.106 0.894 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.153 4.153 17 C -0.076 4.076 18 C 0.047 3.953 19 N -0.373 5.373 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 C -0.005 4.005 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.229 0.771 33 H 0.227 0.773 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.039 0.961 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.716 -24.775 8.371 26.768 hybrid contribution 0.439 -0.199 -0.624 0.789 sum -5.277 -24.973 7.746 26.674 Atomic orbital electron populations 1.21389 0.78126 1.01854 1.02425 1.44914 1.07792 1.07048 1.81176 1.15946 0.81725 0.84311 0.78032 1.90979 1.67746 1.30268 1.57027 1.45086 1.04768 1.09757 1.80662 1.20913 0.87943 0.84026 1.04370 1.21758 0.95219 0.97056 1.04675 1.19822 0.80643 0.90736 0.76694 1.90808 1.66788 1.33486 1.49319 1.49614 1.04213 1.09134 1.72998 1.22499 0.90738 0.88804 0.99380 1.22719 0.94252 0.95681 0.99154 0.89352 1.22423 0.94444 0.98117 1.00277 1.22474 0.97366 0.94441 1.01614 1.22484 0.93640 0.98955 1.00189 1.22260 0.94870 0.93430 0.97034 1.20513 0.97479 0.86142 0.91211 1.42342 1.87681 0.99070 1.08218 1.19131 1.41668 0.88605 0.87587 0.91420 1.24715 1.02858 0.96497 0.96753 1.69637 1.56961 1.08345 1.23143 0.86281 0.77933 0.79368 0.82685 1.21297 1.21706 1.21368 1.23107 0.89237 0.89684 0.98429 0.92358 0.92321 0.90730 0.77101 0.77267 0.90508 0.90343 0.88399 0.88562 0.90843 0.90984 0.91817 0.91552 0.91374 0.91860 0.89657 0.91850 0.96510 0.96107 0.78144 0.93479 0.91204 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 10.70 59.84 0.64 1.33 16 2 N -0.75 -5.50 5.72 -72.07 -0.41 -5.91 16 3 C 0.70 8.15 8.57 -86.92 -0.74 7.40 16 4 O -0.58 -9.92 16.34 5.29 0.09 -9.84 16 5 N -0.75 -6.70 5.56 -65.23 -0.36 -7.06 16 6 C 0.15 1.79 4.96 -4.04 -0.02 1.77 16 7 C -0.15 -1.39 4.79 -27.88 -0.13 -1.52 16 8 C 0.53 8.00 7.92 -10.99 -0.09 7.91 16 9 O -0.53 -10.75 16.31 5.56 0.09 -10.66 16 10 N -0.62 -8.66 3.36 -167.31 -0.56 -9.22 16 11 C 0.11 1.05 6.48 -2.45 -0.02 1.03 16 12 C -0.10 -1.10 3.52 -88.30 -0.31 -1.41 16 13 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 14 C -0.11 -1.06 6.38 -25.15 -0.16 -1.22 16 15 C -0.12 -1.38 6.90 -24.79 -0.17 -1.55 16 16 C -0.11 -1.65 5.68 -25.15 -0.14 -1.79 16 17 C -0.07 -1.13 0.61 -152.19 -0.09 -1.23 16 18 C 0.17 3.48 5.20 -4.04 -0.02 3.46 16 19 N -0.73 -18.37 4.59 -59.90 -0.27 -18.64 16 20 C -0.24 -6.79 9.99 -15.06 -0.15 -6.95 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.66 13.06 55.49 0.72 -27.93 16 24 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 C 0.12 1.91 6.08 -1.03 -0.01 1.90 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.40 1.44 8.84 -40.82 -0.36 1.08 16 33 H 0.39 1.94 8.49 -40.82 -0.35 1.59 16 34 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.10 0.73 7.95 -51.93 -0.41 0.31 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.52 7.30 -51.93 -0.38 0.14 16 39 H 0.07 0.59 7.26 -51.93 -0.38 0.21 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.54 7.25 -51.93 -0.38 0.16 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.51 7.16 -51.93 -0.37 1.13 16 45 H 0.06 0.84 7.19 -51.93 -0.37 0.47 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.38 10.12 6.60 -40.82 -0.27 9.85 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.07 1.04 7.20 -51.93 -0.37 0.67 16 51 H 0.10 2.14 6.98 -51.93 -0.36 1.78 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -38.47 404.83 -9.75 -48.22 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.61 Total: 8.18 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.51 Total: 8.71 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -0.89 Total: -68.77 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.18 Total: -20.49 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.47 -9.75 -48.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112341568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.846 kcal (2) G-P(sol) polarization free energy of solvation -38.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds