Wall clock time and date at job start Tue Mar 31 2020 21:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00037 * 2 1 4 4 O 1.21586 * 120.00039 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00184 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00063 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47190 * 180.02562 * 6 5 3 8 8 C 1.50693 * 109.47207 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00136 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00080 * 179.97438 * 8 7 6 11 11 C 1.48119 * 127.84127 * 359.97438 * 10 8 7 12 12 C 1.54331 * 104.69230 * 140.28883 * 11 10 8 13 13 H 1.09001 * 112.59821 * 262.02861 * 12 11 10 14 14 C 1.54169 * 109.65500 * 137.80055 * 12 11 10 15 15 C 1.54843 * 104.32556 * 223.42034 * 14 12 11 16 16 C 1.54840 * 102.73500 * 38.18879 * 15 14 12 17 17 C 1.54166 * 104.32903 * 321.81229 * 16 15 14 18 18 C 1.53005 * 111.81953 * 261.25095 * 17 16 15 19 19 N 1.46505 * 109.46904 * 298.97995 * 18 17 16 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 C 1.50619 * 127.74572 * 180.34211 * 10 8 7 29 29 H 1.08994 * 109.47304 * 300.00176 * 1 2 3 30 30 H 1.09001 * 109.46952 * 60.00001 * 1 2 3 31 31 H 1.09003 * 109.47116 * 179.97438 * 1 2 3 32 32 H 0.97005 * 120.00414 * 179.97438 * 2 1 3 33 33 H 0.97003 * 119.99560 * 0.02562 * 5 3 2 34 34 H 1.08992 * 109.47344 * 60.00642 * 6 5 3 35 35 H 1.08997 * 109.47175 * 300.00074 * 6 5 3 36 36 H 1.09005 * 109.47328 * 59.99395 * 7 6 5 37 37 H 1.09006 * 109.46611 * 300.00095 * 7 6 5 38 38 H 1.09005 * 110.39470 * 21.48933 * 11 10 8 39 39 H 1.08994 * 110.49098 * 259.14138 * 11 10 8 40 40 H 1.08999 * 110.46159 * 104.70976 * 14 12 11 41 41 H 1.08999 * 110.56878 * 342.18935 * 14 12 11 42 42 H 1.08994 * 110.75931 * 279.87537 * 15 14 12 43 43 H 1.09005 * 110.91542 * 156.56829 * 15 14 12 44 44 H 1.08998 * 110.46422 * 203.09931 * 16 15 14 45 45 H 1.08999 * 110.46501 * 80.52011 * 16 15 14 46 46 H 1.09003 * 109.46946 * 178.98754 * 18 17 16 47 47 H 1.08993 * 109.47679 * 58.98297 * 18 17 16 48 48 H 0.97000 * 119.99792 * 0.02562 * 19 18 17 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 50 50 H 1.09004 * 110.78240 * 101.35943 * 28 10 8 51 51 H 1.09001 * 111.15169 * 338.17597 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2202 -0.0005 5 7 3.4866 1.1673 0.0005 6 6 4.2191 2.4360 0.0011 7 6 5.7234 2.1564 0.0010 8 6 6.4768 3.4615 0.0009 9 8 5.8704 4.5118 0.0005 10 7 7.8246 3.4615 0.0013 11 6 8.7333 2.2918 0.0024 12 6 9.8806 2.6866 -0.9513 13 1 9.7507 2.2793 -1.9540 14 6 11.2305 2.2518 -0.3466 15 6 12.1663 3.4613 -0.5892 16 6 11.2305 4.6710 -0.3474 17 6 9.8806 4.2358 -0.9518 18 6 9.6761 4.8066 -2.3566 19 7 9.6786 6.2703 -2.2941 20 6 9.5104 7.0047 -3.4375 21 1 9.3755 6.5049 -4.3854 22 6 9.5070 8.3915 -3.3774 23 7 9.6708 9.0006 -2.2222 24 14 9.2698 9.3933 -4.9362 25 1 7.9581 9.0574 -5.5457 26 1 9.3063 10.8403 -4.6049 27 1 10.3573 9.0785 -5.8972 28 6 8.7466 4.6525 0.0085 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9500 -0.8401 0.0004 33 1 3.9716 0.3272 0.0005 34 1 3.9555 3.0073 0.8911 35 1 3.9561 3.0077 -0.8888 36 1 5.9867 1.5851 -0.8893 37 1 5.9866 1.5844 0.8908 38 1 8.2157 1.4083 -0.3715 39 1 9.1190 2.1092 1.0053 40 1 11.6101 1.3675 -0.8585 41 1 11.1271 2.0580 0.7210 42 1 12.5406 3.4610 -1.6129 43 1 12.9920 3.4634 0.1225 44 1 11.6101 5.5549 -0.8598 45 1 11.1253 4.8640 0.7202 46 1 8.7214 4.4616 -2.7535 47 1 10.4832 4.4693 -3.0069 48 1 9.7994 6.7192 -1.4427 49 1 9.6688 9.9697 -2.1803 50 1 9.1418 4.8297 1.0088 51 1 8.2412 5.5434 -0.3645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112341568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:58 Heat of formation + Delta-G solvation = -82.597191 kcal Electronic energy + Delta-G solvation = -29950.852663 eV Core-core repulsion = 25883.912951 eV Total energy + Delta-G solvation = -4066.939712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58483 -41.00813 -39.83937 -36.46730 -36.38522 -35.60692 -35.58537 -33.47339 -32.17587 -31.01617 -30.28520 -27.91630 -27.08253 -26.50379 -25.38117 -24.30606 -23.24403 -22.09878 -21.33631 -20.31326 -19.82285 -19.51342 -18.97023 -18.09187 -17.29712 -17.11551 -16.68214 -16.67243 -16.54302 -16.25149 -15.92703 -15.40460 -15.24523 -15.17304 -15.02118 -14.72925 -14.50302 -14.41855 -14.04503 -13.82062 -13.35239 -13.25625 -13.09546 -13.02573 -12.94177 -12.85461 -12.65301 -12.47556 -12.25825 -12.15741 -11.83074 -11.77429 -11.70299 -11.54235 -11.40019 -11.37295 -11.33000 -10.97290 -10.79980 -10.47925 -9.83189 -9.71189 -9.01084 -7.98037 -5.25873 1.41161 1.45651 1.51213 1.53255 1.63474 2.07604 2.10194 2.52364 3.27587 3.34915 3.41445 3.52470 3.63965 3.71651 3.93318 4.05016 4.18492 4.21999 4.29512 4.36627 4.45123 4.46746 4.47389 4.51482 4.58456 4.65962 4.76699 4.77153 4.84321 4.87867 4.90958 4.93272 4.98830 5.01781 5.06667 5.12395 5.24376 5.28115 5.34475 5.37342 5.42399 5.47820 5.48084 5.52475 5.61991 6.00133 6.24251 6.63271 7.11746 7.16648 7.30477 7.56854 8.07587 8.30350 9.25363 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009806 B = 0.002717 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2854.582333 B =10303.120748 C =12547.748539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.733 5.733 3 C 0.690 3.310 4 O -0.647 6.647 5 N -0.725 5.725 6 C 0.159 3.841 7 C -0.123 4.123 8 C 0.520 3.480 9 O -0.601 6.601 10 N -0.623 5.623 11 C 0.108 3.892 12 C -0.093 4.093 13 H 0.092 0.908 14 C -0.101 4.101 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.071 4.071 18 C 0.175 3.825 19 N -0.739 5.739 20 C -0.246 4.246 21 H 0.071 0.929 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.284 1.284 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.115 3.885 29 H 0.044 0.956 30 H 0.041 0.959 31 H 0.118 0.882 32 H 0.418 0.582 33 H 0.420 0.580 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.074 0.926 46 H -0.001 1.001 47 H 0.024 0.976 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.084 0.916 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -31.805 8.968 33.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.390 5.390 3 C 0.389 3.611 4 O -0.528 6.528 5 N -0.382 5.382 6 C 0.033 3.967 7 C -0.163 4.163 8 C 0.310 3.690 9 O -0.482 6.482 10 N -0.356 5.356 11 C -0.013 4.013 12 C -0.112 4.112 13 H 0.110 0.890 14 C -0.138 4.138 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.072 4.072 18 C 0.049 3.951 19 N -0.382 5.382 20 C -0.378 4.378 21 H 0.089 0.911 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.801 3.199 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.198 1.198 28 C -0.007 4.007 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.137 0.863 32 H 0.255 0.745 33 H 0.258 0.742 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.017 0.983 47 H 0.042 0.958 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.102 0.898 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.468 -30.325 8.787 31.887 hybrid contribution 0.058 1.452 -0.772 1.645 sum -4.409 -28.874 8.015 30.288 Atomic orbital electron populations 1.21540 0.77490 1.04220 1.00976 1.44764 1.08178 1.06613 1.79425 1.16318 0.82374 0.84564 0.77796 1.90943 1.69150 1.32915 1.59814 1.44700 1.03942 1.09864 1.79714 1.20575 0.90186 0.84740 1.01171 1.21684 0.91921 0.94228 1.08463 1.20907 0.80953 0.91886 0.75238 1.90784 1.68319 1.36516 1.52576 1.49740 1.04248 1.09756 1.71896 1.22892 0.89450 0.88109 1.00826 1.22758 0.96644 0.91459 1.00375 0.88990 1.22400 0.91889 0.97539 1.01970 1.22464 0.97713 0.93856 1.01501 1.22434 0.93882 0.98868 1.00099 1.22148 0.94733 0.96900 0.93431 1.20628 0.96277 0.83377 0.94859 1.42535 1.87371 1.01328 1.06947 1.19550 1.40249 0.89315 0.88666 0.91133 1.25566 1.03651 0.97726 0.99895 1.69806 1.58715 1.08112 1.25229 0.85229 0.78081 0.77381 0.79200 1.21050 1.21955 1.19799 1.22892 0.89751 0.88997 0.99058 0.93759 0.93976 0.86347 0.74469 0.74243 0.93471 0.94320 0.84842 0.83894 0.86555 0.88003 0.89204 0.89113 0.92564 0.90043 0.94090 0.90753 0.98278 0.95800 0.79306 0.94028 0.89836 0.94364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.18 10.70 127.77 1.37 2.54 16 2 N -0.73 -9.17 5.72 -500.20 -2.86 -12.03 16 3 C 0.69 15.66 8.57 179.05 1.53 17.19 16 4 O -0.65 -23.08 16.34 -3.99 -0.07 -23.14 16 5 N -0.72 -11.63 5.56 -478.55 -2.66 -14.29 16 6 C 0.16 3.76 4.96 86.38 0.43 4.19 16 7 C -0.12 -1.96 4.79 29.85 0.14 -1.81 16 8 C 0.52 15.47 7.92 87.65 0.69 16.17 16 9 O -0.60 -26.33 16.31 -3.04 -0.05 -26.38 16 10 N -0.62 -16.39 3.36 -801.64 -2.70 -19.08 16 11 C 0.11 1.52 6.48 86.52 0.56 2.08 16 12 C -0.09 -1.72 3.52 -9.29 -0.03 -1.75 16 13 H 0.09 1.69 7.88 -2.39 -0.02 1.67 16 14 C -0.10 -1.32 6.38 31.62 0.20 -1.12 16 15 C -0.12 -2.35 6.90 31.85 0.22 -2.13 16 16 C -0.11 -3.28 5.68 31.62 0.18 -3.10 16 17 C -0.07 -2.14 0.61 -50.68 -0.03 -2.17 16 18 C 0.18 7.28 5.20 86.38 0.45 7.73 16 19 N -0.74 -39.57 4.59 -343.44 -1.58 -41.14 16 20 C -0.25 -14.59 9.99 84.04 0.84 -13.75 16 21 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 23 N -0.97 -62.40 13.06 21.65 0.28 -62.12 16 24 Si 0.97 48.95 29.55 68.60 2.03 50.98 16 25 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 26 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 27 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 28 C 0.12 3.91 6.08 86.02 0.52 4.43 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.42 1.49 8.84 -92.70 -0.82 0.67 16 33 H 0.42 2.34 8.49 -92.71 -0.79 1.55 16 34 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 35 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.13 1.27 7.95 -2.38 -0.02 1.25 16 37 H 0.14 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.12 0.74 7.30 -2.38 -0.02 0.73 16 39 H 0.10 0.95 7.26 -2.39 -0.02 0.94 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.84 7.25 -2.39 -0.02 0.82 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.04 1.52 7.16 -2.39 -0.02 1.51 16 45 H 0.07 1.93 7.19 -2.39 -0.02 1.91 16 46 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.37 21.29 6.60 -92.71 -0.61 20.68 16 49 H 0.25 15.70 8.31 -92.70 -0.77 14.93 16 50 H 0.08 2.54 7.20 -2.38 -0.02 2.52 16 51 H 0.04 1.77 6.98 -2.39 -0.02 1.76 16 Total: -1.00 -96.83 404.83 -1.32 -98.15 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -1.26 Total: 24.74 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 7.54 Total: 24.33 kcal Atomic # 7 Polarization: -139.16 SS G_CDS: -9.51 Total: -148.67 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.11 Total: -49.53 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -96.83 -1.32 -98.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112341568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.553 kcal (2) G-P(sol) polarization free energy of solvation -96.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds