Wall clock time and date at job start Tue Mar 31 2020 21:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99979 * 2 1 4 4 H 1.48493 * 109.47423 * 269.99961 * 3 2 1 5 5 H 1.48501 * 109.47040 * 30.00311 * 3 2 1 6 6 H 1.48503 * 109.47126 * 149.99564 * 3 2 1 7 7 C 1.38813 * 120.00413 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00335 * 179.72593 * 7 2 1 9 9 N 1.36939 * 119.99460 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99929 * 179.72046 * 9 7 2 11 11 C 1.53004 * 109.47162 * 180.02562 * 10 9 7 12 12 C 1.54161 * 111.81986 * 298.98899 * 11 10 9 13 13 C 1.54840 * 104.32460 * 261.24219 * 12 11 10 14 14 C 1.54838 * 102.73908 * 321.81745 * 13 12 11 15 15 C 1.54161 * 104.32569 * 38.18452 * 14 13 12 16 16 H 1.09002 * 111.09235 * 98.32047 * 15 14 13 17 17 C 1.54334 * 109.65790 * 223.42041 * 15 14 13 18 18 N 1.48117 * 104.69151 * 137.80084 * 17 15 14 19 19 C 1.34778 * 127.84417 * 140.22820 * 18 17 15 20 20 O 1.21281 * 119.99634 * 354.96582 * 19 18 17 21 21 C 1.50698 * 120.00301 * 174.96825 * 19 18 17 22 22 C 1.52997 * 109.46966 * 267.58966 * 21 19 18 23 23 C 1.53001 * 109.46915 * 179.97438 * 22 21 19 24 24 C 1.53006 * 109.47052 * 60.00157 * 23 22 21 25 25 F 1.39898 * 109.47069 * 59.99913 * 24 23 22 26 26 C 1.52997 * 109.47132 * 299.99710 * 24 23 22 27 27 C 1.52996 * 109.47143 * 147.58969 * 21 19 18 28 28 C 1.50623 * 104.41474 * 319.99519 * 18 17 15 29 29 H 0.96995 * 119.99880 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00454 * 359.72669 * 9 7 2 31 31 H 1.09000 * 109.47240 * 300.00486 * 10 9 7 32 32 H 1.08999 * 109.46660 * 60.00447 * 10 9 7 33 33 H 1.08997 * 110.46809 * 19.95735 * 12 11 10 34 34 H 1.08997 * 110.45923 * 142.40631 * 12 11 10 35 35 H 1.09003 * 110.75937 * 80.12589 * 13 12 11 36 36 H 1.09001 * 110.76111 * 203.32040 * 13 12 11 37 37 H 1.09001 * 110.46709 * 156.89835 * 14 13 12 38 38 H 1.09002 * 110.46124 * 279.34687 * 14 13 12 39 39 H 1.09000 * 110.39552 * 256.60310 * 17 15 14 40 40 H 1.09001 * 110.38998 * 18.88248 * 17 15 14 41 41 H 1.09006 * 109.46817 * 27.58935 * 21 19 18 42 42 H 1.08996 * 109.47242 * 299.99511 * 22 21 19 43 43 H 1.09003 * 109.47455 * 59.99942 * 22 21 19 44 44 H 1.08994 * 109.47681 * 299.99955 * 23 22 21 45 45 H 1.09001 * 109.47085 * 179.97438 * 23 22 21 46 46 H 1.08995 * 109.46792 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47242 * 300.00472 * 26 24 23 48 48 H 1.08993 * 109.47532 * 179.97438 * 26 24 23 49 49 H 1.09003 * 109.47341 * 299.99786 * 27 21 19 50 50 H 1.08997 * 109.47545 * 59.99703 * 27 21 19 51 51 H 1.09003 * 110.78103 * 281.65595 * 28 18 17 52 52 H 1.09008 * 111.15457 * 158.47468 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 -0.0039 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 -0.0051 11 6 1.0639 -4.8197 -0.0045 12 6 0.1686 -4.8076 1.2505 13 6 0.8277 -5.8369 2.2012 14 6 1.2874 -6.9524 1.2307 15 6 1.7803 -6.1932 -0.0171 16 1 2.8651 -6.0864 -0.0083 17 6 1.2641 -6.8964 -1.2903 18 7 0.8336 -5.7935 -2.1802 19 6 0.9978 -5.6955 -3.5144 20 8 1.6368 -6.5368 -4.1101 21 6 0.3875 -4.5406 -4.2659 22 6 -0.9985 -4.9399 -4.7765 23 6 -1.6183 -3.7671 -5.5390 24 6 -0.7241 -3.4002 -6.7250 25 9 -0.6069 -4.5020 -7.5791 26 6 0.6618 -3.0010 -6.2144 27 6 1.2819 -4.1743 -5.4519 28 6 0.1648 -4.8074 -1.2587 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0042 31 1 2.6814 -3.7125 -0.8975 32 1 2.6881 -3.7164 0.8824 33 1 0.1637 -3.8172 1.7056 34 1 -0.8461 -5.1148 0.9976 35 1 1.6817 -5.3962 2.7155 36 1 0.1021 -6.2200 2.9187 37 1 2.1003 -7.5297 1.6713 38 1 0.4519 -7.6048 0.9769 39 1 2.0637 -7.4713 -1.7574 40 1 0.4212 -7.5447 -1.0508 41 1 0.2962 -3.6819 -3.6007 42 1 -0.9072 -5.7985 -5.4417 43 1 -1.6357 -5.2009 -3.9316 44 1 -1.7097 -2.9087 -4.8736 45 1 -2.6055 -4.0517 -5.9031 46 1 -1.1659 -2.5650 -7.2684 47 1 0.5705 -2.1426 -5.5490 48 1 1.2991 -2.7400 -7.0593 49 1 2.2693 -3.8898 -5.0882 50 1 1.3732 -5.0329 -6.1171 51 1 -0.8434 -5.1361 -1.0066 52 1 0.1412 -3.8107 -1.6995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112523523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:33 Heat of formation + Delta-G solvation = -111.851077 kcal Electronic energy + Delta-G solvation = -31661.995075 eV Core-core repulsion = 27573.866857 eV Total energy + Delta-G solvation = -4088.128217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.60144 -41.71199 -40.24170 -37.96300 -36.37680 -35.61991 -33.41683 -32.11812 -31.89914 -30.98014 -30.20501 -27.31558 -26.68564 -25.46048 -24.40745 -23.84709 -23.15126 -21.42256 -20.88921 -20.02287 -19.68773 -19.11227 -18.11115 -17.48359 -16.81560 -16.71633 -16.65368 -16.41223 -16.29340 -16.19074 -15.54061 -15.24443 -15.10122 -14.72533 -14.51246 -14.45179 -14.34904 -13.98376 -13.84191 -13.40265 -13.29510 -13.21780 -13.05561 -13.00608 -12.87410 -12.78011 -12.67930 -12.19379 -12.15143 -12.10890 -11.87990 -11.80573 -11.77675 -11.63931 -11.48168 -11.45994 -11.36173 -11.31618 -11.09263 -10.92017 -10.61507 -9.76612 -8.95260 -7.92524 -5.19424 1.48321 1.49244 1.54210 1.56853 1.89887 2.56877 3.18984 3.39845 3.44801 3.50887 3.53621 3.61343 3.70155 3.83082 3.94967 4.04891 4.07372 4.16631 4.17725 4.25082 4.25709 4.31010 4.35779 4.43264 4.45153 4.48635 4.54645 4.65892 4.69577 4.78083 4.82925 4.85646 4.90843 4.93651 4.96176 4.98089 5.04266 5.06135 5.09716 5.15437 5.18797 5.20609 5.26842 5.31133 5.38368 5.43100 5.48641 5.53571 5.56431 6.30026 6.47183 7.09701 7.38356 8.10944 8.38924 9.30011 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007566 B = 0.004895 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.869929 B = 5718.882127 C = 8543.750956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.061 4.061 3 Si 0.961 3.039 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.732 5.732 10 C 0.177 3.823 11 C -0.072 4.072 12 C -0.111 4.111 13 C -0.117 4.117 14 C -0.104 4.104 15 C -0.091 4.091 16 H 0.077 0.923 17 C 0.111 3.889 18 N -0.623 5.623 19 C 0.536 3.464 20 O -0.587 6.587 21 C -0.101 4.101 22 C -0.099 4.099 23 C -0.141 4.141 24 C 0.087 3.913 25 F -0.228 7.228 26 C -0.143 4.143 27 C -0.100 4.100 28 C 0.115 3.885 29 H 0.252 0.748 30 H 0.380 0.620 31 H 0.001 0.999 32 H 0.017 0.983 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.062 0.938 51 H 0.098 0.902 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -12.359 -4.386 13.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.254 4.254 3 Si 0.791 3.209 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.376 5.376 10 C 0.050 3.950 11 C -0.073 4.073 12 C -0.148 4.148 13 C -0.154 4.154 14 C -0.142 4.142 15 C -0.111 4.111 16 H 0.096 0.904 17 C -0.011 4.011 18 N -0.355 5.355 19 C 0.326 3.674 20 O -0.468 6.468 21 C -0.123 4.123 22 C -0.137 4.137 23 C -0.178 4.178 24 C 0.051 3.949 25 F -0.209 7.209 26 C -0.181 4.181 27 C -0.138 4.138 28 C -0.006 4.006 29 H 0.061 0.939 30 H 0.213 0.787 31 H 0.018 0.982 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.128 0.872 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.073 0.927 50 H 0.080 0.920 51 H 0.116 0.884 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.077 -12.720 -4.825 14.202 hybrid contribution 0.593 1.231 -0.028 1.366 sum -3.484 -11.490 -4.852 12.950 Atomic orbital electron populations 1.69759 1.06054 1.25947 1.59196 1.25326 0.96276 1.00204 1.03625 0.85331 0.77764 0.80450 0.77350 1.21567 1.22042 1.20193 1.19481 0.91121 0.85518 1.41490 0.91732 1.42430 1.05640 1.00370 1.89127 1.20545 0.93146 0.84831 0.96462 1.22142 0.95437 0.94327 0.95390 1.22425 0.98410 0.99780 0.94226 1.22450 1.00196 0.95403 0.97356 1.22391 1.01579 0.97005 0.93179 1.22669 0.99843 0.93298 0.95291 0.90417 1.22558 1.00165 0.89380 0.88963 1.49757 1.57329 1.22800 1.05630 1.20636 0.79130 0.86920 0.80683 1.90632 1.43263 1.44758 1.68166 1.21331 0.97429 0.96127 0.97366 1.21341 0.92948 0.98972 1.00410 1.22143 0.99436 0.99412 0.96813 1.21776 0.96889 0.86302 0.89926 1.92765 1.97312 1.57867 1.72996 1.22153 0.96229 0.98442 1.01251 1.21288 0.97811 0.98877 0.95783 1.23192 0.96121 0.92761 0.88567 0.93931 0.78659 0.98158 0.96498 0.93051 0.89911 0.92570 0.89715 0.90176 0.89474 0.91393 0.88711 0.88990 0.92158 0.90209 0.88743 0.88741 0.87157 0.89187 0.89639 0.92715 0.91963 0.88410 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.78 13.06 21.65 0.28 -54.50 16 2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 3 Si 0.96 44.61 29.55 68.60 2.03 46.63 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -13.09 9.99 84.03 0.84 -12.25 16 8 H 0.06 3.44 7.83 -2.92 -0.02 3.42 16 9 N -0.73 -34.45 4.59 -343.45 -1.58 -36.03 16 10 C 0.18 6.84 5.20 86.38 0.45 7.29 16 11 C -0.07 -2.06 0.61 -50.68 -0.03 -2.09 16 12 C -0.11 -2.88 5.68 31.62 0.18 -2.70 16 13 C -0.12 -2.40 6.90 31.85 0.22 -2.18 16 14 C -0.10 -1.83 6.38 31.61 0.20 -1.63 16 15 C -0.09 -2.16 3.52 -9.29 -0.03 -2.20 16 16 H 0.08 2.00 7.88 -2.39 -0.02 1.98 16 17 C 0.11 2.72 6.63 86.52 0.57 3.29 16 18 N -0.62 -18.12 3.36 -801.62 -2.70 -20.81 16 19 C 0.54 17.68 6.94 87.66 0.61 18.29 16 20 O -0.59 -23.12 16.47 -3.03 -0.05 -23.17 16 21 C -0.10 -2.89 2.25 -11.54 -0.03 -2.91 16 22 C -0.10 -2.34 5.06 30.59 0.15 -2.18 16 23 C -0.14 -2.70 5.72 30.60 0.17 -2.53 16 24 C 0.09 1.76 4.12 30.60 0.13 1.89 16 25 F -0.23 -5.84 16.05 44.97 0.72 -5.12 16 26 C -0.14 -3.23 5.72 30.61 0.18 -3.05 16 27 C -0.10 -2.83 4.71 30.61 0.14 -2.69 16 28 C 0.12 3.23 5.90 86.02 0.51 3.74 16 29 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.38 18.41 6.60 -92.71 -0.61 17.80 16 31 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 1.71 7.16 -2.39 -0.02 1.69 16 34 H 0.08 1.84 7.19 -2.39 -0.02 1.82 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.24 7.25 -2.39 -0.02 1.22 16 39 H 0.07 1.82 7.84 -2.39 -0.02 1.80 16 40 H 0.09 1.86 7.26 -2.39 -0.02 1.84 16 41 H 0.09 2.75 6.43 -2.38 -0.02 2.73 16 42 H 0.06 1.59 7.80 -2.39 -0.02 1.57 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.06 1.96 7.51 -2.39 -0.02 1.94 16 51 H 0.10 2.28 7.20 -2.39 -0.02 2.26 16 52 H 0.07 2.45 5.62 -2.38 -0.01 2.44 16 Total: -1.00 -66.51 394.83 3.73 -62.78 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.29 Total: 35.01 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 4.73 Total: -4.79 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -3.99 Total: -111.34 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.72 Total: -5.12 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.51 3.73 -62.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112523523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.074 kcal (2) G-P(sol) polarization free energy of solvation -66.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds