Wall clock time and date at job start Tue Mar 31 2020 20:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99500 * 2 1 4 4 C 1.46898 * 111.00413 * 123.94817 * 2 1 3 5 5 H 1.08998 * 109.47394 * 295.66604 * 4 2 1 6 6 C 1.50700 * 109.47382 * 175.65641 * 4 2 1 7 7 O 1.21280 * 119.99731 * 323.45701 * 6 4 2 8 8 N 1.34773 * 119.99964 * 143.45368 * 6 4 2 9 9 C 1.47081 * 120.88201 * 355.07910 * 8 6 4 10 10 C 1.53702 * 108.27352 * 128.75375 * 9 8 6 11 11 N 1.46902 * 109.25580 * 54.08562 * 10 9 8 12 12 C 1.46898 * 110.99759 * 172.60773 * 11 10 9 13 13 C 1.50704 * 109.47142 * 294.30232 * 12 11 10 14 14 O 1.21296 * 119.99861 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00276 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00295 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99550 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00290 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99792 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47035 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47027 * 120.00196 * 20 18 16 23 23 H 1.48493 * 109.47326 * 240.00083 * 20 18 16 24 24 C 1.46900 * 111.26782 * 296.75227 * 11 10 9 25 25 C 1.47076 * 120.87968 * 175.35692 * 8 6 4 26 26 C 1.53004 * 109.46636 * 55.66058 * 4 2 1 27 27 C 1.53006 * 117.49605 * 252.48769 * 26 4 2 28 28 C 1.53002 * 117.49939 * 183.86692 * 26 4 2 29 29 H 1.08996 * 109.47517 * 296.04125 * 1 2 3 30 30 H 1.09003 * 109.47466 * 56.04985 * 1 2 3 31 31 H 1.09008 * 109.46499 * 176.04776 * 1 2 3 32 32 H 1.09000 * 109.47300 * 189.15004 * 3 2 1 33 33 H 1.08995 * 109.47244 * 309.15228 * 3 2 1 34 34 H 1.09004 * 109.47056 * 69.15198 * 3 2 1 35 35 H 1.08992 * 109.63038 * 248.52556 * 9 8 6 36 36 H 1.09002 * 109.63017 * 9.10509 * 9 8 6 37 37 H 1.09001 * 109.64754 * 294.08051 * 10 9 8 38 38 H 1.09000 * 109.44176 * 173.96347 * 10 9 8 39 39 H 1.08997 * 109.47413 * 54.29584 * 12 11 10 40 40 H 1.09001 * 109.47203 * 174.30204 * 12 11 10 41 41 H 0.97007 * 119.99813 * 359.97438 * 15 13 12 42 42 H 0.96999 * 120.00087 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.49263 * 303.14981 * 24 11 10 44 44 H 1.09001 * 109.48926 * 183.06600 * 24 11 10 45 45 H 1.09002 * 109.63338 * 350.90057 * 25 8 6 46 46 H 1.09003 * 109.62564 * 111.47891 * 25 8 6 47 47 H 1.08996 * 115.55370 * 38.19427 * 26 4 2 48 48 H 1.08999 * 117.49721 * 359.97438 * 27 26 4 49 49 H 1.09000 * 117.49561 * 145.02390 * 27 26 4 50 50 H 1.08996 * 117.50010 * 214.97825 * 28 26 4 51 51 H 1.08997 * 117.49889 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 1 1.7102 -0.2760 2.0686 6 6 3.4982 -0.8334 1.0454 7 8 4.0353 -0.9342 -0.0374 8 7 4.2451 -0.7819 2.1660 9 6 3.6223 -0.5522 3.4785 10 6 4.1126 -1.6443 4.4424 11 7 5.5815 -1.6624 4.4472 12 6 6.0934 -2.5697 5.4829 13 6 5.7296 -2.0346 6.8439 14 8 5.1049 -0.9995 6.9415 15 7 6.0983 -2.7062 7.9527 16 6 5.7669 -2.2197 9.1909 17 1 5.2107 -1.2980 9.2777 18 6 6.1466 -2.9124 10.3340 19 7 6.8238 -4.0336 10.2283 20 14 5.6956 -2.2491 12.0211 21 1 4.9387 -0.9807 11.8681 22 1 4.8553 -3.2435 12.7355 23 1 6.9338 -1.9962 12.8007 24 6 6.1143 -2.0185 3.1253 25 6 5.7053 -0.9478 2.1081 26 6 1.4186 -2.1827 1.1093 27 6 0.3642 -2.5372 2.1598 28 6 1.7769 -3.1147 2.2685 29 1 -0.3634 0.4511 0.9233 30 1 -0.3634 0.5739 -0.8525 31 1 -0.3632 -1.0253 -0.0708 32 1 3.0727 1.3472 -0.1634 33 1 1.5198 1.9432 -0.7969 34 1 1.7840 1.8418 0.9604 35 1 3.9116 0.4291 3.8544 36 1 2.5377 -0.6057 3.3835 37 1 3.7379 -2.6150 4.1175 38 1 3.7482 -1.4316 5.4474 39 1 5.6519 -3.5575 5.3511 40 1 7.1777 -2.6421 5.3989 41 1 6.5976 -3.5343 7.8747 42 1 7.0886 -4.5174 11.0263 43 1 5.7118 -2.9839 2.8189 44 1 7.2017 -2.0765 3.1751 45 1 5.9988 -1.2630 1.1068 46 1 6.1911 -0.0037 2.3549 47 1 1.3132 -2.6277 0.1199 48 1 0.0819 -1.7612 2.8713 49 1 -0.4351 -3.2156 1.8615 50 1 1.9069 -4.1729 2.0418 51 1 2.4239 -2.7187 3.0512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112966405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:11 Heat of formation + Delta-G solvation = -5.970909 kcal Electronic energy + Delta-G solvation = -30993.099378 eV Core-core repulsion = 26929.482431 eV Total energy + Delta-G solvation = -4063.616947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.80688 -38.95988 -37.93549 -37.18135 -36.00528 -34.49733 -33.80266 -31.33904 -31.26737 -29.41034 -28.24847 -27.86873 -25.69634 -23.98039 -23.82496 -22.88757 -22.65737 -21.85721 -20.33884 -19.29671 -18.79536 -17.97079 -17.61681 -16.51436 -16.31566 -15.85687 -15.54085 -15.15027 -15.06072 -14.85829 -14.62176 -14.49290 -14.37500 -14.09629 -13.87138 -13.68329 -13.60636 -13.14796 -12.84962 -12.58632 -12.48621 -12.23153 -11.98071 -11.95500 -11.78293 -11.64918 -11.57167 -11.41640 -11.26270 -11.16513 -11.14198 -10.83169 -10.74697 -10.58528 -10.38094 -10.27084 -9.58568 -9.52225 -8.86972 -8.57664 -8.40637 -8.03226 -7.92818 -6.46436 -3.87386 2.50683 2.76682 3.12629 3.23807 3.30333 3.42279 3.70638 3.83836 3.90326 4.18381 4.31220 4.49783 4.59591 4.67311 4.81766 4.87169 4.91714 4.94841 5.04127 5.09853 5.14304 5.18978 5.20995 5.27931 5.30003 5.36399 5.39978 5.45583 5.47085 5.62021 5.64737 5.69693 5.72639 5.76517 5.80127 5.84915 5.86425 5.91866 6.12063 6.16674 6.20807 6.42979 6.63734 6.70263 7.10152 7.25677 7.37832 7.50852 8.01423 8.14454 8.56131 9.13171 9.49217 10.00174 10.71244 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018659 B = 0.002520 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.289610 B =11110.293655 C =11612.317768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.523 5.523 3 C 0.020 3.980 4 C 0.097 3.903 5 H 0.064 0.936 6 C 0.526 3.474 7 O -0.526 6.526 8 N -0.612 5.612 9 C 0.109 3.891 10 C 0.037 3.963 11 N -0.513 5.513 12 C 0.046 3.954 13 C 0.443 3.557 14 O -0.579 6.579 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.040 3.960 25 C 0.120 3.880 26 C -0.142 4.142 27 C -0.173 4.173 28 C -0.183 4.183 29 H 0.026 0.974 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.116 0.884 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.035 0.965 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.118 0.882 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 3.060 -17.719 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.248 5.248 3 C -0.128 4.128 4 C -0.014 4.014 5 H 0.081 0.919 6 C 0.313 3.687 7 O -0.401 6.401 8 N -0.347 5.347 9 C -0.013 4.013 10 C -0.092 4.092 11 N -0.238 5.238 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.464 6.464 15 N -0.199 5.199 16 C -0.428 4.428 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.088 4.088 25 C -0.002 4.002 26 C -0.161 4.161 27 C -0.210 4.210 28 C -0.221 4.221 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.134 0.866 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.136 0.864 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.116 0.884 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.399 3.834 -18.417 21.029 hybrid contribution -0.323 -0.763 1.563 1.769 sum -9.722 3.071 -16.854 19.698 Atomic orbital electron populations 1.22420 0.86449 1.02795 1.00498 1.61714 1.07996 1.13724 1.41328 1.22464 1.01801 0.88129 1.00367 1.21293 0.92024 0.94551 0.93542 0.91897 1.20241 0.88621 0.76155 0.83703 1.90669 1.73499 1.48765 1.27209 1.48263 1.07786 1.71559 1.07059 1.22107 0.97137 1.00456 0.81646 1.22830 0.87989 0.96242 1.02090 1.61490 1.07927 1.51457 1.02910 1.21859 1.00943 0.93857 0.91845 1.19708 0.85586 0.86837 0.85016 1.90474 1.44389 1.24964 1.86534 1.41885 1.49607 1.23462 1.04970 1.19736 1.33252 1.08256 0.81563 0.87832 1.25270 0.96797 0.95782 1.00091 1.69618 1.38367 1.15650 1.30568 0.85808 0.78242 0.78933 0.81416 1.19205 1.20771 1.20727 1.22518 1.00635 0.96555 0.89134 1.21676 0.79386 0.99445 0.99719 1.22034 1.03895 0.93892 0.96296 1.23081 0.92723 1.03724 1.01444 1.23300 0.98741 0.99453 1.00574 0.95552 0.91143 0.90714 0.90863 0.90879 0.95559 0.89937 0.89969 0.94958 0.86647 0.93421 0.89136 0.77480 0.91881 0.94641 0.89463 0.88892 0.90646 0.86369 0.88663 0.88287 0.88359 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.22 60.06 0.55 0.77 16 2 N -0.52 -5.64 4.65 -244.58 -1.14 -6.78 16 3 C 0.02 0.20 9.22 60.07 0.55 0.76 16 4 C 0.10 1.07 1.52 -68.86 -0.10 0.97 16 5 H 0.06 0.65 5.49 -51.93 -0.28 0.37 16 6 C 0.53 7.06 5.39 -10.99 -0.06 7.00 16 7 O -0.53 -8.73 15.66 5.56 0.09 -8.64 16 8 N -0.61 -7.76 3.00 -172.18 -0.52 -8.28 16 9 C 0.11 1.36 5.61 -3.36 -0.02 1.34 16 10 C 0.04 0.54 4.98 -3.46 -0.02 0.52 16 11 N -0.51 -7.91 4.37 -235.46 -1.03 -8.94 16 12 C 0.05 0.77 5.45 -4.98 -0.03 0.75 16 13 C 0.44 9.86 7.44 -10.99 -0.08 9.77 16 14 O -0.58 -14.57 13.91 5.54 0.08 -14.49 16 15 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 16 16 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 16 17 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 20 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.04 0.51 5.62 -3.70 -0.02 0.49 16 25 C 0.12 1.49 6.58 -3.60 -0.02 1.47 16 26 C -0.14 -1.42 3.72 -90.61 -0.34 -1.76 16 27 C -0.17 -1.42 9.97 -26.73 -0.27 -1.68 16 28 C -0.18 -1.81 9.92 -26.73 -0.27 -2.07 16 29 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 31 H 0.07 0.57 6.81 -51.92 -0.35 0.22 16 32 H 0.07 0.87 6.89 -51.93 -0.36 0.51 16 33 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.03 0.24 8.13 -51.93 -0.42 -0.18 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.87 4.81 -51.93 -0.25 0.62 16 37 H 0.03 0.45 5.98 -51.93 -0.31 0.14 16 38 H 0.12 2.04 5.76 -51.93 -0.30 1.74 16 39 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.09 1.38 7.97 -51.93 -0.41 0.96 16 41 H 0.39 9.18 7.90 -40.82 -0.32 8.85 16 42 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.97 7.99 -51.93 -0.41 0.56 16 45 H 0.09 1.16 7.09 -51.93 -0.37 0.79 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.10 1.15 3.76 -51.93 -0.20 0.95 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -31.57 393.96 -9.43 -41.00 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.14 Total: 11.06 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.36 Total: 10.62 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -2.02 Total: -61.00 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.16 Total: -23.13 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.57 -9.43 -41.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112966405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.031 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds