Wall clock time and date at job start Tue Mar 31 2020 20:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99500 * 2 1 4 4 C 1.46898 * 111.00413 * 123.94817 * 2 1 3 5 5 H 1.08998 * 109.47394 * 295.66604 * 4 2 1 6 6 C 1.50700 * 109.47382 * 175.65641 * 4 2 1 7 7 O 1.21280 * 119.99731 * 323.45701 * 6 4 2 8 8 N 1.34773 * 119.99964 * 143.45368 * 6 4 2 9 9 C 1.47081 * 120.88201 * 355.07910 * 8 6 4 10 10 C 1.53702 * 108.27352 * 128.75375 * 9 8 6 11 11 N 1.46902 * 109.25580 * 54.08562 * 10 9 8 12 12 C 1.46898 * 110.99759 * 172.60773 * 11 10 9 13 13 C 1.50704 * 109.47142 * 294.30232 * 12 11 10 14 14 O 1.21296 * 119.99861 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00276 * 180.02562 * 13 12 11 16 16 C 1.37096 * 120.00295 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99550 * 359.97438 * 16 15 13 18 18 C 1.38952 * 120.00290 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99792 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47035 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47027 * 120.00196 * 20 18 16 23 23 H 1.48493 * 109.47326 * 240.00083 * 20 18 16 24 24 C 1.46900 * 111.26782 * 296.75227 * 11 10 9 25 25 C 1.47076 * 120.87968 * 175.35692 * 8 6 4 26 26 C 1.53004 * 109.46636 * 55.66058 * 4 2 1 27 27 C 1.53006 * 117.49605 * 252.48769 * 26 4 2 28 28 C 1.53002 * 117.49939 * 183.86692 * 26 4 2 29 29 H 1.08996 * 109.47517 * 296.04125 * 1 2 3 30 30 H 1.09003 * 109.47466 * 56.04985 * 1 2 3 31 31 H 1.09008 * 109.46499 * 176.04776 * 1 2 3 32 32 H 1.09000 * 109.47300 * 189.15004 * 3 2 1 33 33 H 1.08995 * 109.47244 * 309.15228 * 3 2 1 34 34 H 1.09004 * 109.47056 * 69.15198 * 3 2 1 35 35 H 1.08992 * 109.63038 * 248.52556 * 9 8 6 36 36 H 1.09002 * 109.63017 * 9.10509 * 9 8 6 37 37 H 1.09001 * 109.64754 * 294.08051 * 10 9 8 38 38 H 1.09000 * 109.44176 * 173.96347 * 10 9 8 39 39 H 1.08997 * 109.47413 * 54.29584 * 12 11 10 40 40 H 1.09001 * 109.47203 * 174.30204 * 12 11 10 41 41 H 0.97007 * 119.99813 * 359.97438 * 15 13 12 42 42 H 0.96999 * 120.00087 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.49263 * 303.14981 * 24 11 10 44 44 H 1.09001 * 109.48926 * 183.06600 * 24 11 10 45 45 H 1.09002 * 109.63338 * 350.90057 * 25 8 6 46 46 H 1.09003 * 109.62564 * 111.47891 * 25 8 6 47 47 H 1.08996 * 115.55370 * 38.19427 * 26 4 2 48 48 H 1.08999 * 117.49721 * 359.97438 * 27 26 4 49 49 H 1.09000 * 117.49561 * 145.02390 * 27 26 4 50 50 H 1.08996 * 117.50010 * 214.97825 * 28 26 4 51 51 H 1.08997 * 117.49889 * 359.97438 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7658 1.1376 5 1 1.7102 -0.2760 2.0686 6 6 3.4982 -0.8334 1.0454 7 8 4.0353 -0.9342 -0.0374 8 7 4.2451 -0.7819 2.1660 9 6 3.6223 -0.5522 3.4785 10 6 4.1126 -1.6443 4.4424 11 7 5.5815 -1.6624 4.4472 12 6 6.0934 -2.5697 5.4829 13 6 5.7296 -2.0346 6.8439 14 8 5.1049 -0.9995 6.9415 15 7 6.0983 -2.7062 7.9527 16 6 5.7669 -2.2197 9.1909 17 1 5.2107 -1.2980 9.2777 18 6 6.1466 -2.9124 10.3340 19 7 6.8238 -4.0336 10.2283 20 14 5.6956 -2.2491 12.0211 21 1 4.9387 -0.9807 11.8681 22 1 4.8553 -3.2435 12.7355 23 1 6.9338 -1.9962 12.8007 24 6 6.1143 -2.0185 3.1253 25 6 5.7053 -0.9478 2.1081 26 6 1.4186 -2.1827 1.1093 27 6 0.3642 -2.5372 2.1598 28 6 1.7769 -3.1147 2.2685 29 1 -0.3634 0.4511 0.9233 30 1 -0.3634 0.5739 -0.8525 31 1 -0.3632 -1.0253 -0.0708 32 1 3.0727 1.3472 -0.1634 33 1 1.5198 1.9432 -0.7969 34 1 1.7840 1.8418 0.9604 35 1 3.9116 0.4291 3.8544 36 1 2.5377 -0.6057 3.3835 37 1 3.7379 -2.6150 4.1175 38 1 3.7482 -1.4316 5.4474 39 1 5.6519 -3.5575 5.3511 40 1 7.1777 -2.6421 5.3989 41 1 6.5976 -3.5343 7.8747 42 1 7.0886 -4.5174 11.0263 43 1 5.7118 -2.9839 2.8189 44 1 7.2017 -2.0765 3.1751 45 1 5.9988 -1.2630 1.1068 46 1 6.1911 -0.0037 2.3549 47 1 1.3132 -2.6277 0.1199 48 1 0.0819 -1.7612 2.8713 49 1 -0.4351 -3.2156 1.8615 50 1 1.9069 -4.1729 2.0418 51 1 2.4239 -2.7187 3.0512 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112966405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:10 Heat of formation + Delta-G solvation = -29.327897 kcal Electronic energy + Delta-G solvation = -30994.112213 eV Core-core repulsion = 26929.482431 eV Total energy + Delta-G solvation = -4064.629782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81108 -40.40816 -39.11006 -38.36530 -36.79058 -36.03283 -35.38688 -33.24897 -32.36239 -30.55141 -29.32744 -28.58002 -27.26511 -25.50467 -24.89723 -23.71582 -23.42138 -22.76106 -21.34081 -20.99828 -19.88636 -19.77518 -18.66335 -17.80738 -17.36115 -17.07495 -16.64418 -16.43366 -16.29983 -16.10367 -15.90924 -15.53765 -15.46539 -15.32359 -15.21447 -15.09810 -14.52488 -14.33659 -13.93527 -13.76978 -13.53851 -13.30663 -13.23315 -13.02790 -12.89299 -12.79896 -12.69837 -12.51828 -12.40885 -12.37950 -12.29556 -12.16340 -12.10297 -12.00487 -11.57639 -11.43135 -11.31555 -10.55077 -10.32947 -9.98370 -9.78557 -9.34865 -9.21007 -8.44594 -5.92556 1.37686 1.43433 1.48280 1.56892 1.78168 2.07875 2.29221 2.66659 2.70085 2.93339 3.22841 3.35792 3.42611 3.70350 3.76199 3.84393 3.91821 3.97524 4.05797 4.11800 4.21251 4.21924 4.25029 4.37071 4.41235 4.45925 4.48800 4.51547 4.60632 4.63772 4.67014 4.70954 4.73542 4.81208 4.88900 4.92484 4.96112 5.01075 5.06145 5.16965 5.21757 5.37259 5.43804 5.79148 5.86951 5.99272 6.04843 6.12783 6.34092 6.62786 7.10314 7.15671 7.59598 8.14522 8.73040 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018659 B = 0.002520 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.289610 B =11110.293655 C =11612.317768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.023 3.977 4 C 0.102 3.898 5 H 0.071 0.929 6 C 0.526 3.474 7 O -0.562 6.562 8 N -0.610 5.610 9 C 0.119 3.881 10 C 0.042 3.958 11 N -0.529 5.529 12 C 0.058 3.942 13 C 0.444 3.556 14 O -0.610 6.610 15 N -0.575 5.575 16 C -0.327 4.327 17 H 0.081 0.919 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.990 3.010 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.274 1.274 24 C 0.047 3.953 25 C 0.120 3.880 26 C -0.148 4.148 27 C -0.151 4.151 28 C -0.194 4.194 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.395 0.605 42 H 0.276 0.724 43 H 0.040 0.960 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.101 0.899 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 2.772 -18.063 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.266 5.266 3 C -0.125 4.125 4 C -0.010 4.010 5 H 0.088 0.912 6 C 0.314 3.686 7 O -0.439 6.439 8 N -0.344 5.344 9 C -0.003 4.003 10 C -0.087 4.087 11 N -0.254 5.254 12 C -0.073 4.073 13 C 0.232 3.768 14 O -0.496 6.496 15 N -0.213 5.213 16 C -0.456 4.456 17 H 0.099 0.901 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.814 3.186 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.199 1.199 24 C -0.081 4.081 25 C -0.003 4.003 26 C -0.167 4.167 27 C -0.188 4.188 28 C -0.232 4.232 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.129 0.871 48 H 0.121 0.879 49 H 0.134 0.866 50 H 0.119 0.881 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.382 3.538 -18.768 21.738 hybrid contribution -0.023 -0.642 1.584 1.710 sum -10.405 2.896 -17.183 20.296 Atomic orbital electron populations 1.22474 0.84665 1.03445 1.01428 1.61711 1.09655 1.13931 1.41337 1.22426 1.00414 0.88287 1.01376 1.21269 0.90198 0.95442 0.94080 0.91172 1.20708 0.89704 0.75089 0.83108 1.90647 1.74358 1.50509 1.28417 1.48303 1.07974 1.71068 1.07011 1.22008 0.98204 0.99149 0.80968 1.22693 0.87747 0.97442 1.00768 1.61460 1.08428 1.51599 1.03950 1.21728 1.02362 0.94395 0.88803 1.20673 0.83734 0.85935 0.86500 1.90458 1.45321 1.26400 1.87443 1.41952 1.50443 1.23932 1.04955 1.19676 1.34428 1.08200 0.83338 0.90127 1.26006 0.96425 0.95912 1.03028 1.69678 1.38737 1.16263 1.31659 0.84903 0.78165 0.78216 0.77277 1.19630 1.19770 1.19903 1.22535 1.01643 0.96598 0.87305 1.21689 0.79383 0.99511 0.99668 1.21951 1.05297 0.93191 0.96247 1.23169 0.92180 1.03441 1.00007 1.23294 1.00072 0.99578 1.00222 0.94691 0.90061 0.90258 0.93305 0.89293 0.94839 0.90831 0.88010 0.93903 0.89873 0.91595 0.86990 0.77118 0.91431 0.94153 0.87633 0.88890 0.90623 0.87108 0.87900 0.86613 0.88084 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.22 127.69 1.18 1.56 16 2 N -0.54 -10.97 4.65 -927.71 -4.32 -15.29 16 3 C 0.02 0.44 9.22 127.69 1.18 1.62 16 4 C 0.10 2.11 1.52 44.17 0.07 2.18 16 5 H 0.07 1.33 5.49 -2.39 -0.01 1.32 16 6 C 0.53 13.82 5.39 87.66 0.47 14.29 16 7 O -0.56 -18.62 15.66 -3.03 -0.05 -18.66 16 8 N -0.61 -15.02 3.00 -817.05 -2.45 -17.47 16 9 C 0.12 2.88 5.61 86.50 0.49 3.37 16 10 C 0.04 1.20 4.98 86.54 0.43 1.63 16 11 N -0.53 -15.75 4.37 -898.86 -3.93 -19.67 16 12 C 0.06 1.87 5.45 85.56 0.47 2.34 16 13 C 0.44 19.87 7.44 87.66 0.65 20.52 16 14 O -0.61 -31.32 13.91 -3.08 -0.04 -31.37 16 15 N -0.58 -28.32 5.29 -306.98 -1.62 -29.94 16 16 C -0.33 -17.93 9.68 84.04 0.81 -17.11 16 17 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 19 N -0.92 -48.87 13.05 21.66 0.28 -48.58 16 20 Si 0.99 42.00 29.55 68.60 2.03 44.02 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 C 0.05 1.10 5.62 86.38 0.49 1.59 16 25 C 0.12 2.87 6.58 86.35 0.57 3.43 16 26 C -0.15 -2.72 3.72 -10.79 -0.04 -2.76 16 27 C -0.15 -2.11 9.97 30.60 0.30 -1.80 16 28 C -0.19 -3.53 9.92 30.60 0.30 -3.23 16 29 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 31 H 0.08 1.03 6.81 -2.38 -0.02 1.01 16 32 H 0.05 1.17 6.89 -2.39 -0.02 1.15 16 33 H 0.09 1.36 8.03 -2.39 -0.02 1.35 16 34 H 0.03 0.57 8.13 -2.38 -0.02 0.56 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 2.03 4.81 -2.39 -0.01 2.02 16 37 H 0.04 1.14 5.98 -2.39 -0.01 1.12 16 38 H 0.08 2.98 5.76 -2.39 -0.01 2.97 16 39 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 40 H 0.11 3.16 7.97 -2.39 -0.02 3.14 16 41 H 0.40 18.61 7.90 -92.70 -0.73 17.88 16 42 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 43 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.11 2.09 7.99 -2.39 -0.02 2.07 16 45 H 0.09 2.26 7.09 -2.39 -0.02 2.24 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.10 1.31 8.07 -2.39 -0.02 1.29 16 49 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.09 1.92 3.76 -2.39 -0.01 1.91 16 Total: -1.00 -68.62 393.96 -2.05 -70.67 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: 0.22 Total: 38.95 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 7.83 Total: 27.34 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -12.04 Total: -130.96 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.09 Total: -50.03 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -68.62 -2.05 -70.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112966405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.344 kcal (2) G-P(sol) polarization free energy of solvation -68.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds