Wall clock time and date at job start Tue Mar 31 2020 21:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99717 * 2 1 4 4 H 1.48504 * 109.46779 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47096 * 299.99430 * 3 2 1 6 6 H 1.48498 * 109.47383 * 59.99680 * 3 2 1 7 7 C 1.38811 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00280 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99634 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99749 * 174.57535 * 9 7 2 11 11 C 1.52997 * 109.47468 * 62.76627 * 10 9 7 12 12 N 1.46504 * 109.46666 * 54.63860 * 11 10 9 13 13 C 1.34775 * 120.00009 * 176.55200 * 12 11 10 14 14 O 1.21281 * 120.00200 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00113 * 179.97438 * 13 12 11 16 16 C 1.53001 * 109.47238 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47410 * 180.02562 * 16 15 13 18 18 C 1.53177 * 109.54131 * 294.55436 * 17 16 15 19 19 C 1.53102 * 109.16462 * 183.15200 * 18 17 16 20 20 O 1.42899 * 109.41317 * 57.60968 * 19 18 17 21 21 C 1.42906 * 114.09745 * 298.84386 * 20 19 18 22 22 C 1.53090 * 109.41684 * 61.15781 * 21 20 19 23 23 C 1.53004 * 109.46710 * 302.76789 * 10 9 7 24 24 C 1.52997 * 109.47377 * 300.00242 * 23 10 9 25 25 C 1.52999 * 109.47063 * 299.99926 * 24 23 10 26 26 C 1.53003 * 109.46957 * 60.00217 * 25 24 23 27 27 C 1.52997 * 109.47057 * 299.99787 * 26 25 24 28 28 H 0.97003 * 120.00192 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00241 * 354.29294 * 9 7 2 30 30 H 1.08997 * 109.47569 * 174.63156 * 11 10 9 31 31 H 1.08999 * 109.47215 * 294.64279 * 11 10 9 32 32 H 0.97000 * 120.00137 * 356.55109 * 12 11 10 33 33 H 1.09001 * 109.46928 * 299.99706 * 15 13 12 34 34 H 1.08999 * 109.47078 * 59.99776 * 15 13 12 35 35 H 1.09002 * 109.46972 * 300.00318 * 16 15 13 36 36 H 1.08999 * 109.47183 * 59.99945 * 16 15 13 37 37 H 1.09001 * 109.54442 * 54.81922 * 17 16 15 38 38 H 1.08997 * 109.52461 * 303.05602 * 18 17 16 39 39 H 1.09005 * 109.52679 * 63.24969 * 18 17 16 40 40 H 1.08994 * 109.47686 * 297.62675 * 19 18 17 41 41 H 1.09000 * 109.47866 * 177.59155 * 19 18 17 42 42 H 1.09007 * 109.47791 * 301.17721 * 21 20 19 43 43 H 1.09001 * 109.48995 * 181.15265 * 21 20 19 44 44 H 1.09000 * 109.52252 * 182.48527 * 22 21 20 45 45 H 1.09005 * 109.51988 * 62.29710 * 22 21 20 46 46 H 1.09008 * 109.47081 * 60.00528 * 23 10 9 47 47 H 1.09004 * 109.46739 * 179.97438 * 23 10 9 48 48 H 1.09004 * 109.47064 * 180.02562 * 24 23 10 49 49 H 1.08996 * 109.47084 * 60.00092 * 24 23 10 50 50 H 1.08996 * 109.47307 * 300.00030 * 25 24 23 51 51 H 1.08998 * 109.47358 * 180.02562 * 25 24 23 52 52 H 1.09001 * 109.46749 * 180.02562 * 26 25 24 53 53 H 1.08996 * 109.47265 * 59.99787 * 26 25 24 54 54 H 1.09004 * 109.47403 * 300.00063 * 27 26 25 55 55 H 1.09000 * 109.47287 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0532 -3.6540 -0.1188 11 6 2.9814 -3.8243 1.0854 12 7 2.2045 -3.7036 2.3216 13 6 2.8034 -3.8888 3.5147 14 8 3.9854 -4.1557 3.5649 15 6 2.0045 -3.7641 4.7863 16 6 2.9157 -4.0202 5.9884 17 6 2.1044 -3.8943 7.2794 18 6 1.6282 -2.4480 7.4462 19 6 0.8852 -2.3139 8.7781 20 8 1.7488 -2.7098 9.8456 21 6 2.1880 -4.0675 9.7679 22 6 2.9832 -4.2720 8.4758 23 6 2.8823 -3.6462 -1.4048 24 6 1.9541 -3.4759 -2.6090 25 6 0.9568 -4.6354 -2.6523 26 6 0.1276 -4.6430 -1.3664 27 6 1.0558 -4.8134 -0.1621 28 1 -0.4850 0.8401 -0.0004 29 1 0.3591 -2.3901 0.0837 30 1 3.4511 -4.8071 1.0461 31 1 3.7509 -3.0526 1.0631 32 1 1.2591 -3.4904 2.2814 33 1 1.5853 -2.7602 4.8551 34 1 1.1964 -4.4956 4.7809 35 1 3.3345 -5.0242 5.9194 36 1 3.7240 -3.2890 5.9940 37 1 1.2428 -4.5604 7.2351 38 1 2.4881 -1.7783 7.4398 39 1 0.9572 -2.1886 6.6272 40 1 0.0029 -2.9537 8.7681 41 1 0.5812 -1.2771 8.9220 42 1 1.3225 -4.7302 9.7708 43 1 2.8223 -4.2942 10.6249 44 1 3.2814 -5.3171 8.3932 45 1 3.8706 -3.6390 8.4902 46 1 3.5929 -2.8202 -1.3740 47 1 3.4240 -4.5880 -1.4934 48 1 2.5448 -3.4709 -3.5252 49 1 1.4128 -2.5341 -2.5202 50 1 1.4981 -5.5772 -2.7412 51 1 0.2958 -4.5143 -3.5105 52 1 -0.5826 -5.4693 -1.3970 53 1 -0.4137 -3.7012 -1.2775 54 1 1.5972 -5.7552 -0.2509 55 1 0.4651 -4.8193 0.7539 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115759076.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:10 Heat of formation + Delta-G solvation = -130.496812 kcal Electronic energy + Delta-G solvation = -30891.858567 eV Core-core repulsion = 26926.382115 eV Total energy + Delta-G solvation = -3965.476452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.04190 -40.36236 -39.72059 -36.41317 -35.81526 -35.02551 -32.93855 -32.17962 -31.78706 -31.54699 -30.22949 -27.57517 -25.92129 -25.68738 -24.46328 -23.52030 -22.94484 -21.73516 -21.07469 -20.89503 -19.80113 -19.03080 -18.06135 -17.04647 -16.94031 -16.86819 -16.74068 -16.49592 -15.93237 -15.79109 -15.62367 -15.42211 -15.24103 -14.93626 -14.72417 -14.58908 -14.32214 -14.02313 -13.46845 -13.40540 -13.30839 -13.17558 -13.05717 -12.92547 -12.89002 -12.80708 -12.59530 -12.49104 -12.24511 -12.12656 -12.03515 -11.88387 -11.74101 -11.68078 -11.32056 -11.24890 -11.15433 -11.09660 -10.89397 -10.70132 -10.64556 -10.40555 -9.85326 -8.90422 -7.88254 -5.12160 1.42369 1.47019 1.52222 1.76865 2.43613 2.58690 3.01550 3.44914 3.70952 3.74039 3.81991 3.82781 3.93790 4.02254 4.08448 4.10833 4.14441 4.26668 4.31396 4.39692 4.43263 4.48906 4.52248 4.62891 4.66473 4.69401 4.76800 4.78928 4.80915 4.81860 4.83713 4.90528 4.93592 4.95342 4.97556 5.06961 5.08834 5.18294 5.19344 5.21797 5.22384 5.31767 5.46861 5.49537 5.50438 5.51604 5.60007 5.62053 5.72342 5.81042 6.30838 6.35155 6.74032 7.39218 7.44261 8.16814 8.43505 9.34156 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011236 B = 0.002869 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.359035 B = 9758.518476 C =11232.332091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.060 4.060 3 Si 0.942 3.058 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.299 1.299 7 C -0.205 4.205 8 H 0.059 0.941 9 N -0.708 5.708 10 C 0.190 3.810 11 C 0.122 3.878 12 N -0.700 5.700 13 C 0.501 3.499 14 O -0.598 6.598 15 C -0.134 4.134 16 C -0.087 4.087 17 C -0.083 4.083 18 C -0.156 4.156 19 C 0.059 3.941 20 O -0.409 6.409 21 C 0.058 3.942 22 C -0.150 4.150 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.108 4.108 26 C -0.112 4.112 27 C -0.107 4.107 28 H 0.246 0.754 29 H 0.378 0.622 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.407 0.593 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.036 0.964 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.041 0.959 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.075 0.925 53 H 0.044 0.956 54 H 0.081 0.919 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -14.039 10.898 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.253 4.253 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.227 1.227 7 C -0.337 4.337 8 H 0.077 0.923 9 N -0.349 5.349 10 C 0.099 3.901 11 C -0.005 4.005 12 N -0.350 5.350 13 C 0.289 3.711 14 O -0.480 6.480 15 C -0.173 4.173 16 C -0.125 4.125 17 C -0.101 4.101 18 C -0.193 4.193 19 C -0.018 4.018 20 O -0.328 6.328 21 C -0.018 4.018 22 C -0.188 4.188 23 C -0.155 4.155 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.144 4.144 28 H 0.056 0.944 29 H 0.212 0.788 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.243 0.757 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.089 0.911 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.078 0.922 52 H 0.094 0.906 53 H 0.062 0.938 54 H 0.100 0.900 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.170 -13.977 11.034 17.808 hybrid contribution 0.015 1.745 -0.537 1.826 sum -0.155 -12.232 10.497 16.119 Atomic orbital electron populations 1.69744 1.05675 1.25180 1.60333 1.25102 0.95946 0.99396 1.04883 0.85527 0.78169 0.82421 0.76394 1.20518 1.22575 1.22666 1.19196 0.90562 0.85058 1.38918 0.92322 1.42464 1.05718 0.99875 1.86831 1.20012 0.91742 0.86920 0.91379 1.21686 0.94400 0.99138 0.85280 1.45838 1.13999 1.69824 1.05300 1.21357 0.87827 0.75572 0.86368 1.90627 1.18007 1.51153 1.88230 1.21733 0.99561 1.05429 0.90585 1.21249 0.97080 1.01955 0.92255 1.21193 0.98635 0.96744 0.93560 1.22328 1.01157 0.97094 0.98766 1.22679 0.92018 1.01347 0.85715 1.87896 1.67294 1.29679 1.47962 1.22719 0.98402 0.82722 0.97998 1.22232 0.98892 1.02766 0.94877 1.21789 0.97762 1.00386 0.95516 1.21299 0.97450 0.98908 0.96714 1.21449 0.97490 0.98185 0.97382 1.21438 0.97751 1.01298 0.94509 1.21652 0.97106 0.97083 0.98596 0.94440 0.78818 0.91902 0.95523 0.75672 0.88318 0.86311 0.91682 0.93663 0.89183 0.92677 0.89878 0.91712 0.88567 0.91822 0.87997 0.89525 0.92465 0.94512 0.91054 0.92567 0.94043 0.90825 0.92248 0.90625 0.93766 0.90018 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.29 13.07 21.65 0.28 -54.00 16 2 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 3 Si 0.94 45.61 29.55 68.60 2.03 47.64 16 4 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 7 C -0.20 -10.36 8.70 84.03 0.73 -9.63 16 8 H 0.06 3.07 6.77 -2.91 -0.02 3.05 16 9 N -0.71 -30.24 3.40 -303.34 -1.03 -31.27 16 10 C 0.19 6.46 0.41 3.60 0.00 6.46 16 11 C 0.12 4.31 4.37 86.38 0.38 4.69 16 12 N -0.70 -22.92 5.09 -463.06 -2.36 -25.28 16 13 C 0.50 16.38 7.83 87.66 0.69 17.07 16 14 O -0.60 -24.11 15.98 -3.03 -0.05 -24.16 16 15 C -0.13 -3.10 5.46 29.85 0.16 -2.94 16 16 C -0.09 -1.97 3.98 30.59 0.12 -1.85 16 17 C -0.08 -1.44 2.27 -10.68 -0.02 -1.47 16 18 C -0.16 -2.91 5.10 30.69 0.16 -2.75 16 19 C 0.06 1.01 6.84 72.02 0.49 1.51 16 20 O -0.41 -8.48 10.77 -148.98 -1.60 -10.08 16 21 C 0.06 0.89 6.84 72.01 0.49 1.38 16 22 C -0.15 -2.47 5.42 30.68 0.17 -2.31 16 23 C -0.11 -3.83 4.52 30.59 0.14 -3.70 16 24 C -0.11 -3.45 5.77 30.59 0.18 -3.27 16 25 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 26 C -0.11 -3.05 5.75 30.59 0.18 -2.87 16 27 C -0.11 -2.89 4.65 30.59 0.14 -2.74 16 28 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.38 17.34 6.64 -92.71 -0.62 16.73 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.03 1.12 7.51 -2.39 -0.02 1.11 16 32 H 0.41 12.67 7.39 -92.71 -0.69 11.99 16 33 H 0.10 2.25 6.66 -2.39 -0.02 2.23 16 34 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 36 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.46 6.75 -2.38 -0.02 1.44 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.04 1.40 7.23 -2.38 -0.02 1.39 16 47 H 0.07 2.00 8.14 -2.38 -0.02 1.99 16 48 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 49 H 0.04 1.70 7.60 -2.39 -0.02 1.68 16 50 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 53 H 0.04 1.48 6.92 -2.39 -0.02 1.47 16 54 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 55 H 0.06 1.67 7.28 -2.39 -0.02 1.65 16 Total: -1.00 -64.76 414.05 1.48 -63.29 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.44 Total: 41.73 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 4.65 Total: -7.86 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -3.11 Total: -110.55 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.65 Total: -34.24 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -64.76 1.48 -63.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115759076.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.211 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds