Wall clock time and date at job start Tue Mar 31 2020 21:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00384 * 2 1 4 4 O 1.21595 * 119.99326 * 0.26836 * 3 2 1 5 5 N 1.34770 * 120.00524 * 180.27502 * 3 2 1 6 6 C 1.46500 * 120.00197 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47212 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99868 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00053 * 179.97438 * 7 6 5 10 10 C 1.46920 * 120.63104 * 359.71856 * 9 7 6 11 11 C 1.53628 * 108.54223 * 126.37052 * 10 9 7 12 12 C 1.53041 * 109.24242 * 54.85592 * 11 10 9 13 13 C 1.53036 * 109.53739 * 298.51166 * 12 11 10 14 14 H 1.08994 * 109.52473 * 301.39818 * 13 12 11 15 15 C 1.52998 * 109.49558 * 181.31405 * 13 12 11 16 16 H 1.09002 * 109.87431 * 179.56076 * 15 13 12 17 17 C 1.54319 * 109.88623 * 300.73617 * 15 13 12 18 18 C 1.55161 * 102.94313 * 141.60640 * 17 15 13 19 19 C 1.54900 * 101.58063 * 324.50202 * 18 17 15 20 20 N 1.47024 * 109.88131 * 58.54751 * 15 13 12 21 21 C 1.36936 * 125.64962 * 61.60558 * 20 15 13 22 22 H 1.07997 * 119.99870 * 11.65056 * 21 20 15 23 23 C 1.38805 * 120.00007 * 191.65671 * 21 20 15 24 24 N 1.31627 * 120.00146 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00088 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47519 * 89.99625 * 25 23 21 27 27 H 1.48503 * 109.46945 * 210.00154 * 25 23 21 28 28 H 1.48502 * 109.47066 * 329.99565 * 25 23 21 29 29 C 1.46926 * 120.62737 * 180.02562 * 9 7 6 30 30 H 1.09005 * 109.47189 * 179.72700 * 1 2 3 31 31 H 1.09004 * 109.47011 * 299.72714 * 1 2 3 32 32 H 1.09004 * 109.47323 * 59.72813 * 1 2 3 33 33 H 0.97007 * 119.99814 * 180.26977 * 2 1 3 34 34 H 0.97007 * 119.99728 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47040 * 299.99653 * 6 5 3 36 36 H 1.08997 * 109.46937 * 59.99990 * 6 5 3 37 37 H 1.08997 * 109.58750 * 246.20245 * 10 9 7 38 38 H 1.09001 * 109.58943 * 6.62836 * 10 9 7 39 39 H 1.08994 * 109.63044 * 294.86543 * 11 10 9 40 40 H 1.09002 * 109.45195 * 174.74290 * 11 10 9 41 41 H 1.09000 * 109.45679 * 178.48721 * 12 11 10 42 42 H 1.09005 * 109.45411 * 58.53141 * 12 11 10 43 43 H 1.08997 * 110.72606 * 259.97361 * 17 15 13 44 44 H 1.09008 * 110.72030 * 23.24903 * 17 15 13 45 45 H 1.08993 * 111.00508 * 206.42278 * 18 17 15 46 46 H 1.09004 * 111.00050 * 82.57836 * 18 17 15 47 47 H 1.08997 * 110.36787 * 278.16198 * 19 18 17 48 48 H 1.09007 * 110.45895 * 155.89473 * 19 18 17 49 49 H 0.96998 * 119.99973 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.59357 * 353.37407 * 29 9 7 51 51 H 1.09004 * 109.58982 * 113.65731 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2201 0.0049 5 7 3.4866 1.1672 -0.0056 6 6 4.2191 2.4359 -0.0062 7 6 5.7007 2.1605 -0.0122 8 8 6.1050 1.0171 -0.0162 9 7 6.5765 3.1850 -0.0143 10 6 6.1021 4.5754 -0.0169 11 6 6.7619 5.3190 1.1544 12 6 8.2820 5.1737 1.0519 13 6 8.6622 3.6943 1.1455 14 1 8.3015 3.2845 2.0889 15 6 10.1840 3.5528 1.0758 16 1 10.4622 2.5015 1.1498 17 6 10.7061 4.1450 -0.2501 18 6 12.0291 4.8355 0.1747 19 6 11.6668 5.3598 1.5865 20 7 10.8074 4.3131 2.1690 21 6 10.6202 4.0869 3.5065 22 1 10.1246 3.1863 3.8376 23 6 11.0674 5.0151 4.4366 24 7 11.6719 6.1125 4.0330 25 14 10.8128 4.7062 6.2612 26 1 11.9802 3.9678 6.8060 27 1 10.6742 6.0047 6.9684 28 1 9.5811 3.9007 6.4597 29 6 8.0239 2.9323 -0.0207 30 1 -0.3634 -1.0277 -0.0049 31 1 -0.3633 0.5096 0.8925 32 1 -0.3634 0.5181 -0.8876 33 1 1.9500 -0.8401 -0.0040 34 1 3.9716 0.3271 -0.0093 35 1 3.9521 3.0092 -0.8939 36 1 3.9595 3.0057 0.8860 37 1 6.3761 5.0533 -0.9574 38 1 5.0187 4.5921 0.1018 39 1 6.4187 4.8942 2.0977 40 1 6.4935 6.3745 1.1117 41 1 8.7549 5.7225 1.8663 42 1 8.6216 5.5763 0.0975 43 1 10.8991 3.3551 -0.9759 44 1 10.0018 4.8744 -0.6505 45 1 12.2735 5.6583 -0.4969 46 1 12.8470 4.1165 0.2229 47 1 11.1218 6.3009 1.5134 48 1 12.5670 5.4894 2.1875 49 1 11.9847 6.7609 4.6830 50 1 8.2091 1.8645 0.0953 51 1 8.4508 3.2769 -0.9626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120391977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:10 Heat of formation + Delta-G solvation = -37.591873 kcal Electronic energy + Delta-G solvation = -30651.929223 eV Core-core repulsion = 26586.941089 eV Total energy + Delta-G solvation = -4064.988135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.63664 -39.83902 -38.41040 -36.51005 -34.97516 -34.55138 -32.99527 -32.31010 -31.29523 -29.41404 -28.82051 -26.78454 -26.13650 -24.66025 -24.49876 -22.58179 -21.42084 -21.11106 -20.24222 -19.51260 -18.79235 -18.35094 -16.94839 -16.85011 -16.53137 -16.18964 -15.61337 -15.27681 -15.10650 -14.61413 -14.58151 -14.24787 -14.18627 -13.97795 -13.73278 -13.66546 -13.19992 -12.96206 -12.76991 -12.55376 -12.44322 -12.15631 -12.07564 -11.87184 -11.57077 -11.15145 -10.90246 -10.85456 -10.72612 -10.54849 -10.43601 -10.27448 -10.12004 -9.99154 -9.91471 -9.66196 -9.62785 -9.62339 -9.44890 -9.16065 -8.58892 -8.54129 -6.78757 -5.73033 -3.07828 2.30237 2.45839 2.95473 3.02816 3.38678 3.45066 3.45790 4.02549 4.26880 4.48601 4.84734 4.87856 5.08026 5.12124 5.15759 5.18834 5.21904 5.23809 5.41776 5.43806 5.47028 5.54578 5.70955 5.72031 5.76838 5.79998 5.90724 5.94083 6.05505 6.09734 6.11994 6.16661 6.26620 6.34916 6.44220 6.53385 6.58769 6.61913 6.67127 6.76444 6.97841 7.01546 7.14251 7.33820 7.57617 7.62418 7.72113 7.82714 8.00632 8.29965 8.32146 9.21570 9.82647 10.50606 11.37755 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.002652 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.178786 B =10557.082550 C =11478.167379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.751 5.751 3 C 0.706 3.294 4 O -0.593 6.593 5 N -0.734 5.734 6 C 0.121 3.879 7 C 0.509 3.491 8 O -0.546 6.546 9 N -0.599 5.599 10 C 0.103 3.897 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.104 4.104 14 H 0.071 0.929 15 C 0.168 3.832 16 H 0.033 0.967 17 C -0.130 4.130 18 C -0.150 4.150 19 C 0.172 3.828 20 N -0.590 5.590 21 C -0.221 4.221 22 H 0.073 0.927 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.115 3.885 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.399 0.601 34 H 0.408 0.592 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.022 0.978 48 H 0.075 0.925 49 H 0.252 0.748 50 H 0.087 0.913 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.322 -7.289 -11.920 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.406 5.406 3 C 0.405 3.595 4 O -0.471 6.471 5 N -0.393 5.393 6 C -0.007 4.007 7 C 0.296 3.704 8 O -0.424 6.424 9 N -0.331 5.331 10 C -0.020 4.020 11 C -0.173 4.173 12 C -0.143 4.143 13 C -0.126 4.126 14 H 0.089 0.911 15 C 0.059 3.941 16 H 0.051 0.949 17 C -0.168 4.168 18 C -0.189 4.189 19 C 0.047 3.953 20 N -0.314 5.314 21 C -0.350 4.350 22 H 0.091 0.909 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.007 4.007 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.232 0.768 34 H 0.245 0.755 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.106 0.894 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.611 -6.785 -11.694 20.652 hybrid contribution 0.255 -0.770 1.077 1.348 sum -15.357 -7.555 -10.617 20.140 Atomic orbital electron populations 1.21400 0.77975 1.01996 1.02330 1.44876 1.07804 1.07164 1.80769 1.15835 0.81383 0.84409 0.77865 1.90937 1.67940 1.30250 1.57964 1.44758 1.04636 1.09774 1.80099 1.20933 0.88558 0.86608 1.04609 1.20414 0.88237 0.85248 0.76529 1.90670 1.79685 1.21033 1.51007 1.48104 1.07249 1.06058 1.71724 1.21985 0.99008 0.81102 0.99888 1.22022 0.97691 0.99851 0.97715 1.21496 0.93134 0.96833 1.02868 1.21975 0.98086 0.95384 0.97142 0.91097 1.20867 0.89514 0.95176 0.88499 0.94938 1.22696 0.97892 0.99446 0.96765 1.23012 0.96396 0.99307 1.00138 1.21470 0.95558 0.90051 0.88211 1.44481 1.50212 1.36241 1.00484 1.18947 1.33239 1.02429 0.80390 0.90914 1.24807 1.01299 0.96187 0.97883 1.69931 1.43959 1.10555 1.32150 0.86202 0.77855 0.76849 0.85380 1.21684 1.21736 1.20752 1.21873 0.77494 1.01945 0.99363 0.90631 0.92307 0.92350 0.76751 0.75489 0.88582 0.88440 0.90952 0.90080 0.91588 0.91021 0.89291 0.92621 0.92619 0.91466 0.92614 0.92516 0.96042 0.90691 0.93802 0.89447 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.70 10.70 59.84 0.64 1.34 16 2 N -0.75 -6.03 5.72 -72.07 -0.41 -6.45 16 3 C 0.71 8.26 8.57 -86.93 -0.74 7.52 16 4 O -0.59 -9.09 16.34 5.28 0.09 -9.01 16 5 N -0.73 -7.94 5.53 -66.42 -0.37 -8.31 16 6 C 0.12 1.33 4.50 -5.19 -0.02 1.31 16 7 C 0.51 6.70 7.77 -10.99 -0.09 6.62 16 8 O -0.55 -8.66 15.08 5.55 0.08 -8.58 16 9 N -0.60 -7.71 2.97 -172.48 -0.51 -8.22 16 10 C 0.10 1.10 6.37 -3.49 -0.02 1.08 16 11 C -0.13 -1.75 6.10 -26.38 -0.16 -1.91 16 12 C -0.11 -1.72 4.74 -26.69 -0.13 -1.85 16 13 C -0.10 -1.78 2.11 -90.48 -0.19 -1.97 16 14 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 15 C 0.17 3.22 2.95 -66.96 -0.20 3.02 16 16 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.13 -2.12 5.11 -24.90 -0.13 -2.25 16 18 C -0.15 -2.71 7.09 -24.59 -0.17 -2.89 16 19 C 0.17 3.95 5.47 -2.53 -0.01 3.94 16 20 N -0.59 -13.97 2.30 -162.58 -0.37 -14.35 16 21 C -0.22 -5.87 9.85 -15.06 -0.15 -6.02 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 24 N -0.92 -25.99 10.46 55.49 0.58 -25.41 16 25 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.12 1.67 5.57 -3.69 -0.02 1.65 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.40 2.12 8.84 -40.82 -0.36 1.76 16 34 H 0.41 4.10 7.45 -40.82 -0.30 3.79 16 35 H 0.10 0.96 7.93 -51.93 -0.41 0.54 16 36 H 0.10 1.06 7.70 -51.93 -0.40 0.66 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.70 5.93 -51.93 -0.31 0.40 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.85 7.54 -51.93 -0.39 1.45 16 42 H 0.06 0.85 6.10 -51.93 -0.32 0.53 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.02 5.52 -51.92 -0.29 0.74 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.53 8.12 -51.93 -0.42 0.11 16 48 H 0.07 1.97 6.70 -51.92 -0.35 1.62 16 49 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.09 1.38 7.01 -51.93 -0.36 1.02 16 51 H 0.07 0.90 6.96 -51.93 -0.36 0.54 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -32.85 393.02 -9.97 -42.82 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.47 Total: 5.47 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: -1.49 Total: 9.34 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -1.09 Total: -62.74 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.17 Total: -17.58 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.85 -9.97 -42.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120391977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.227 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds