Wall clock time and date at job start Tue Mar 31 2020 21:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34775 * 120.00384 * 2 1 4 4 O 1.21595 * 119.99326 * 0.26836 * 3 2 1 5 5 N 1.34770 * 120.00524 * 180.27502 * 3 2 1 6 6 C 1.46500 * 120.00197 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47212 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99868 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00053 * 179.97438 * 7 6 5 10 10 C 1.46920 * 120.63104 * 359.71856 * 9 7 6 11 11 C 1.53628 * 108.54223 * 126.37052 * 10 9 7 12 12 C 1.53041 * 109.24242 * 54.85592 * 11 10 9 13 13 C 1.53036 * 109.53739 * 298.51166 * 12 11 10 14 14 H 1.08994 * 109.52473 * 301.39818 * 13 12 11 15 15 C 1.52998 * 109.49558 * 181.31405 * 13 12 11 16 16 H 1.09002 * 109.87431 * 179.56076 * 15 13 12 17 17 C 1.54319 * 109.88623 * 300.73617 * 15 13 12 18 18 C 1.55161 * 102.94313 * 141.60640 * 17 15 13 19 19 C 1.54900 * 101.58063 * 324.50202 * 18 17 15 20 20 N 1.47024 * 109.88131 * 58.54751 * 15 13 12 21 21 C 1.36936 * 125.64962 * 61.60558 * 20 15 13 22 22 H 1.07997 * 119.99870 * 11.65056 * 21 20 15 23 23 C 1.38805 * 120.00007 * 191.65671 * 21 20 15 24 24 N 1.31627 * 120.00146 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00088 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47519 * 89.99625 * 25 23 21 27 27 H 1.48503 * 109.46945 * 210.00154 * 25 23 21 28 28 H 1.48502 * 109.47066 * 329.99565 * 25 23 21 29 29 C 1.46926 * 120.62737 * 180.02562 * 9 7 6 30 30 H 1.09005 * 109.47189 * 179.72700 * 1 2 3 31 31 H 1.09004 * 109.47011 * 299.72714 * 1 2 3 32 32 H 1.09004 * 109.47323 * 59.72813 * 1 2 3 33 33 H 0.97007 * 119.99814 * 180.26977 * 2 1 3 34 34 H 0.97007 * 119.99728 * 359.97438 * 5 3 2 35 35 H 1.08997 * 109.47040 * 299.99653 * 6 5 3 36 36 H 1.08997 * 109.46937 * 59.99990 * 6 5 3 37 37 H 1.08997 * 109.58750 * 246.20245 * 10 9 7 38 38 H 1.09001 * 109.58943 * 6.62836 * 10 9 7 39 39 H 1.08994 * 109.63044 * 294.86543 * 11 10 9 40 40 H 1.09002 * 109.45195 * 174.74290 * 11 10 9 41 41 H 1.09000 * 109.45679 * 178.48721 * 12 11 10 42 42 H 1.09005 * 109.45411 * 58.53141 * 12 11 10 43 43 H 1.08997 * 110.72606 * 259.97361 * 17 15 13 44 44 H 1.09008 * 110.72030 * 23.24903 * 17 15 13 45 45 H 1.08993 * 111.00508 * 206.42278 * 18 17 15 46 46 H 1.09004 * 111.00050 * 82.57836 * 18 17 15 47 47 H 1.08997 * 110.36787 * 278.16198 * 19 18 17 48 48 H 1.09007 * 110.45895 * 155.89473 * 19 18 17 49 49 H 0.96998 * 119.99973 * 180.02562 * 24 23 21 50 50 H 1.08998 * 109.59357 * 353.37407 * 29 9 7 51 51 H 1.09004 * 109.58982 * 113.65731 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2201 0.0049 5 7 3.4866 1.1672 -0.0056 6 6 4.2191 2.4359 -0.0062 7 6 5.7007 2.1605 -0.0122 8 8 6.1050 1.0171 -0.0162 9 7 6.5765 3.1850 -0.0143 10 6 6.1021 4.5754 -0.0169 11 6 6.7619 5.3190 1.1544 12 6 8.2820 5.1737 1.0519 13 6 8.6622 3.6943 1.1455 14 1 8.3015 3.2845 2.0889 15 6 10.1840 3.5528 1.0758 16 1 10.4622 2.5015 1.1498 17 6 10.7061 4.1450 -0.2501 18 6 12.0291 4.8355 0.1747 19 6 11.6668 5.3598 1.5865 20 7 10.8074 4.3131 2.1690 21 6 10.6202 4.0869 3.5065 22 1 10.1246 3.1863 3.8376 23 6 11.0674 5.0151 4.4366 24 7 11.6719 6.1125 4.0330 25 14 10.8128 4.7062 6.2612 26 1 11.9802 3.9678 6.8060 27 1 10.6742 6.0047 6.9684 28 1 9.5811 3.9007 6.4597 29 6 8.0239 2.9323 -0.0207 30 1 -0.3634 -1.0277 -0.0049 31 1 -0.3633 0.5096 0.8925 32 1 -0.3634 0.5181 -0.8876 33 1 1.9500 -0.8401 -0.0040 34 1 3.9716 0.3271 -0.0093 35 1 3.9521 3.0092 -0.8939 36 1 3.9595 3.0057 0.8860 37 1 6.3761 5.0533 -0.9574 38 1 5.0187 4.5921 0.1018 39 1 6.4187 4.8942 2.0977 40 1 6.4935 6.3745 1.1117 41 1 8.7549 5.7225 1.8663 42 1 8.6216 5.5763 0.0975 43 1 10.8991 3.3551 -0.9759 44 1 10.0018 4.8744 -0.6505 45 1 12.2735 5.6583 -0.4969 46 1 12.8470 4.1165 0.2229 47 1 11.1218 6.3009 1.5134 48 1 12.5670 5.4894 2.1875 49 1 11.9847 6.7609 4.6830 50 1 8.2091 1.8645 0.0953 51 1 8.4508 3.2769 -0.9626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120391977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:09 Heat of formation + Delta-G solvation = -60.889807 kcal Electronic energy + Delta-G solvation = -30652.939498 eV Core-core repulsion = 26586.941089 eV Total energy + Delta-G solvation = -4065.998409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.66114 -40.83648 -39.79182 -37.81785 -35.72921 -35.48151 -34.71098 -33.76734 -32.51078 -31.21604 -29.81287 -28.09657 -27.00660 -26.44055 -25.66893 -23.85284 -22.65533 -22.02189 -21.86385 -20.64300 -19.93639 -19.53509 -18.58728 -17.87729 -17.65648 -17.10958 -16.95705 -16.51701 -16.32812 -16.11393 -15.70770 -15.60446 -15.34668 -15.16438 -14.88774 -14.69202 -14.34285 -14.03558 -13.91518 -13.78221 -13.62176 -13.40953 -13.26866 -13.15767 -13.01502 -12.88258 -12.73792 -12.43612 -12.03225 -11.95477 -11.81141 -11.73628 -11.58083 -11.50993 -11.43929 -11.25813 -10.93048 -10.90774 -10.62827 -10.49845 -9.88326 -9.65179 -8.75194 -7.82260 -5.16459 1.40968 1.43122 1.43485 1.49321 1.51523 2.07112 2.09661 2.49365 3.31208 3.33047 3.34908 3.67416 3.82848 3.95314 4.07962 4.14127 4.27736 4.28413 4.30000 4.33199 4.37368 4.46546 4.47996 4.54761 4.60257 4.68535 4.78544 4.83634 4.85787 4.88565 4.94772 4.97505 5.10502 5.19638 5.24820 5.26315 5.33479 5.44565 5.47606 5.51279 5.53978 5.62041 5.69885 5.75393 5.86068 5.90787 6.29402 6.32198 6.94536 7.01452 7.15911 7.49320 7.85020 8.50832 9.27124 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015089 B = 0.002652 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.178786 B =10557.082550 C =11478.167379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.739 5.739 3 C 0.700 3.300 4 O -0.632 6.632 5 N -0.731 5.731 6 C 0.126 3.874 7 C 0.510 3.490 8 O -0.576 6.576 9 N -0.600 5.600 10 C 0.106 3.894 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.092 4.092 14 H 0.031 0.969 15 C 0.158 3.842 16 H 0.021 0.979 17 C -0.116 4.116 18 C -0.138 4.138 19 C 0.177 3.823 20 N -0.607 5.607 21 C -0.223 4.223 22 H 0.066 0.934 23 C -0.059 4.059 24 N -0.944 5.944 25 Si 0.963 3.037 26 H -0.289 1.289 27 H -0.294 1.294 28 H -0.276 1.276 29 C 0.127 3.873 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.414 0.586 34 H 0.412 0.588 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.057 0.943 47 H -0.002 1.002 48 H 0.033 0.967 49 H 0.245 0.755 50 H 0.072 0.928 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.065 -8.110 -14.347 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.395 5.395 3 C 0.400 3.600 4 O -0.514 6.514 5 N -0.390 5.390 6 C -0.002 4.002 7 C 0.298 3.702 8 O -0.456 6.456 9 N -0.332 5.332 10 C -0.015 4.015 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.114 4.114 14 H 0.050 0.950 15 C 0.050 3.950 16 H 0.039 0.961 17 C -0.153 4.153 18 C -0.176 4.176 19 C 0.052 3.948 20 N -0.331 5.331 21 C -0.353 4.353 22 H 0.084 0.916 23 C -0.252 4.252 24 N -0.593 5.593 25 Si 0.793 3.207 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.202 1.202 29 C 0.004 3.996 30 H 0.130 0.870 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.249 0.751 34 H 0.250 0.750 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.054 0.946 50 H 0.091 0.909 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.372 -7.659 -14.144 23.674 hybrid contribution 0.795 -0.581 1.851 2.097 sum -16.576 -8.240 -12.293 22.221 Atomic orbital electron populations 1.21567 0.76914 1.04159 1.01410 1.44873 1.08496 1.06781 1.79340 1.16045 0.81452 0.84807 0.77734 1.90907 1.68655 1.31869 1.59924 1.44729 1.04488 1.09946 1.79852 1.20932 0.86753 0.86961 1.05538 1.20751 0.89067 0.84721 0.75645 1.90659 1.80309 1.22290 1.52341 1.48145 1.06501 1.07129 1.71403 1.22158 1.00266 0.79366 0.99728 1.21972 0.95241 1.01475 0.98176 1.21349 0.95319 0.95251 1.01570 1.21727 0.96598 0.96358 0.96705 0.95047 1.21096 0.90860 0.94112 0.88885 0.96096 1.22676 0.96788 1.00426 0.95421 1.22888 0.97446 1.00223 0.97074 1.21243 0.93366 0.89497 0.90686 1.44666 1.51170 1.36635 1.00603 1.19134 1.31944 1.01897 0.82286 0.91644 1.25463 1.02011 0.96417 1.01341 1.70127 1.45278 1.11253 1.32653 0.85307 0.77742 0.76400 0.81291 1.21595 1.22043 1.20159 1.21623 0.78664 1.00531 0.98763 0.86956 0.93418 0.93095 0.75052 0.75019 0.86826 0.88150 0.88220 0.87483 0.93554 0.89105 0.94576 0.90808 0.89327 0.89684 0.89867 0.92386 0.98426 0.94810 0.94567 0.90928 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.15 10.70 127.77 1.37 2.52 16 2 N -0.74 -10.49 5.72 -500.18 -2.86 -13.35 16 3 C 0.70 15.34 8.57 179.06 1.53 16.87 16 4 O -0.63 -18.67 16.34 -4.01 -0.07 -18.73 16 5 N -0.73 -14.58 5.53 -482.31 -2.67 -17.25 16 6 C 0.13 2.49 4.50 85.63 0.39 2.87 16 7 C 0.51 12.44 7.77 87.66 0.68 13.12 16 8 O -0.58 -17.57 15.08 -3.04 -0.05 -17.61 16 9 N -0.60 -14.01 2.97 -817.98 -2.43 -16.44 16 10 C 0.11 1.90 6.37 86.51 0.55 2.45 16 11 C -0.13 -3.19 6.10 30.82 0.19 -3.00 16 12 C -0.10 -3.12 4.74 30.62 0.14 -2.97 16 13 C -0.09 -3.15 2.11 -10.70 -0.02 -3.17 16 14 H 0.03 1.30 8.03 -2.39 -0.02 1.28 16 15 C 0.16 6.03 2.95 45.34 0.13 6.17 16 16 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 17 C -0.12 -3.45 5.11 31.78 0.16 -3.29 16 18 C -0.14 -4.77 7.09 31.98 0.23 -4.55 16 19 C 0.18 8.39 5.47 86.85 0.48 8.86 16 20 N -0.61 -29.72 2.30 -668.29 -1.54 -31.26 16 21 C -0.22 -12.34 9.85 84.03 0.83 -11.51 16 22 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 23 C -0.06 -3.34 5.48 84.86 0.46 -2.88 16 24 N -0.94 -55.96 10.46 21.65 0.23 -55.73 16 25 Si 0.96 46.41 29.55 68.60 2.03 48.43 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 C 0.13 3.43 5.57 86.38 0.48 3.91 16 30 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.41 3.46 8.84 -92.70 -0.82 2.64 16 34 H 0.41 7.63 7.45 -92.70 -0.69 6.94 16 35 H 0.11 1.89 7.93 -2.39 -0.02 1.87 16 36 H 0.10 1.97 7.70 -2.39 -0.02 1.95 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.11 1.44 5.93 -2.39 -0.01 1.42 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.04 1.54 7.54 -2.39 -0.02 1.53 16 42 H 0.07 2.07 6.10 -2.38 -0.01 2.06 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.26 5.52 -2.38 -0.01 2.25 16 45 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.00 -0.12 8.12 -2.39 -0.02 -0.14 16 48 H 0.03 1.86 6.70 -2.38 -0.02 1.84 16 49 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.07 2.22 7.01 -2.39 -0.02 2.20 16 51 H 0.09 2.08 6.96 -2.39 -0.02 2.07 16 Total: -1.00 -76.44 393.02 -0.31 -76.76 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.56 Total: 19.78 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 7.60 Total: 25.40 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -9.27 Total: -134.02 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.11 Total: -36.35 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.44 -0.31 -76.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120391977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.866 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds