Wall clock time and date at job start Tue Mar 31 2020 21:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86794 * 119.99731 * 2 1 4 4 H 1.48505 * 109.47206 * 270.37795 * 3 2 1 5 5 H 1.48499 * 109.47430 * 30.37346 * 3 2 1 6 6 H 1.48503 * 109.47112 * 150.37979 * 3 2 1 7 7 C 1.38810 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99535 * 343.66021 * 7 2 1 9 9 N 1.36929 * 120.00034 * 163.66198 * 7 2 1 10 10 C 1.47751 * 125.82543 * 142.28322 * 9 7 2 11 11 C 1.54907 * 104.84181 * 204.24653 * 10 9 7 12 12 C 1.55155 * 101.58518 * 322.90787 * 11 10 9 13 13 C 1.47029 * 125.64807 * 322.28346 * 9 7 2 14 14 H 1.08997 * 109.87961 * 59.32629 * 13 9 7 15 15 C 1.53001 * 109.88185 * 298.31257 * 13 9 7 16 16 H 1.08995 * 109.49832 * 173.84805 * 15 13 9 17 17 C 1.53035 * 109.52388 * 293.90339 * 15 13 9 18 18 C 1.53041 * 109.53761 * 181.29997 * 17 15 13 19 19 C 1.53190 * 109.34008 * 298.68110 * 18 17 15 20 20 N 1.46927 * 108.77716 * 54.61828 * 19 18 17 21 21 C 1.34768 * 120.63280 * 126.36913 * 20 19 18 22 22 O 1.21283 * 120.00363 * 174.41058 * 21 20 19 23 23 C 1.50709 * 119.99759 * 354.41121 * 21 20 19 24 24 C 1.52997 * 115.54930 * 281.80444 * 23 21 20 25 25 C 1.52997 * 109.47422 * 306.04931 * 24 23 21 26 26 F 1.39903 * 109.47140 * 185.40654 * 25 24 23 27 27 C 1.52996 * 117.49687 * 136.10442 * 23 21 20 28 28 C 1.52996 * 117.49674 * 67.48002 * 23 21 20 29 29 C 1.46929 * 118.73722 * 306.39702 * 20 19 18 30 30 H 0.97001 * 119.99748 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.43074 * 85.36659 * 10 9 7 32 32 H 1.09002 * 110.28694 * 323.05826 * 10 9 7 33 33 H 1.09003 * 111.00315 * 204.82684 * 11 10 9 34 34 H 1.09003 * 111.03362 * 81.00007 * 11 10 9 35 35 H 1.09002 * 110.71607 * 277.13889 * 12 11 10 36 36 H 1.08997 * 110.71762 * 153.86549 * 12 11 10 37 37 H 1.08997 * 109.43882 * 61.29263 * 17 15 13 38 38 H 1.09006 * 109.48756 * 301.33329 * 17 15 13 39 39 H 1.09004 * 109.49791 * 178.70891 * 18 17 15 40 40 H 1.09002 * 109.49760 * 58.65074 * 18 17 15 41 41 H 1.09000 * 109.58607 * 174.40839 * 19 18 17 42 42 H 1.09002 * 109.58478 * 294.83024 * 19 18 17 43 43 H 1.09002 * 109.47223 * 66.04722 * 24 23 21 44 44 H 1.08994 * 109.47221 * 186.04687 * 24 23 21 45 45 H 1.08995 * 109.47374 * 305.41226 * 25 24 23 46 46 H 1.09005 * 109.47363 * 65.40724 * 25 24 23 47 47 H 1.08997 * 117.50221 * 359.97438 * 27 23 21 48 48 H 1.08997 * 117.50030 * 145.02415 * 27 23 21 49 49 H 1.09007 * 117.48960 * 214.97553 * 28 23 21 50 50 H 1.08988 * 117.50350 * 359.97438 * 28 23 21 51 51 H 1.08996 * 109.58349 * 173.39336 * 29 20 19 52 52 H 1.09003 * 109.58299 * 293.67302 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4897 2.0511 -1.4001 5 1 1.4516 2.6504 0.7079 6 1 3.5518 1.4379 0.6920 7 6 2.0103 -1.2021 -0.0005 8 1 1.5030 -2.1186 0.2622 9 7 3.3381 -1.2259 -0.3341 10 6 4.3719 -2.0763 0.2914 11 6 5.7047 -1.3261 0.0459 12 6 5.4797 -0.7482 -1.3763 13 6 3.9745 -0.4077 -1.3768 14 1 3.8337 0.6502 -1.1552 15 6 3.3666 -0.7388 -2.7413 16 1 3.7630 -0.0548 -3.4918 17 6 3.7216 -2.1774 -3.1239 18 6 3.1412 -2.4983 -4.5031 19 6 1.6152 -2.3732 -4.4529 20 7 1.2665 -1.0385 -3.9472 21 6 0.4339 -0.2373 -4.6408 22 8 0.0734 0.8190 -4.1662 23 6 -0.0492 -0.6539 -6.0062 24 6 0.9508 -0.4594 -7.1477 25 6 1.4354 0.9917 -7.1595 26 9 2.2533 1.2012 -8.2751 27 6 -1.5321 -0.4507 -6.3232 28 6 -0.9867 -1.8604 -6.0860 29 6 1.8432 -0.5937 -2.6711 30 1 -0.4850 0.8401 -0.0004 31 1 4.3958 -3.0574 -0.1831 32 1 4.1835 -2.1756 1.3604 33 1 6.5491 -2.0153 0.0586 34 1 5.8441 -0.5275 0.7746 35 1 5.7063 -1.4958 -2.1365 36 1 6.0784 0.1501 -1.5267 37 1 3.3044 -2.8625 -2.3859 38 1 4.8056 -2.2895 -3.1511 39 1 3.4138 -3.5154 -4.7849 40 1 3.5397 -1.7982 -5.2374 41 1 1.2048 -2.5033 -5.4543 42 1 1.2079 -3.1342 -3.7872 43 1 1.8015 -1.1254 -7.0029 44 1 0.4673 -0.6887 -8.0972 45 1 0.5767 1.6612 -7.2076 46 1 2.0024 1.1929 -6.2504 47 1 -2.1584 -0.0161 -5.5442 48 1 -1.7956 -0.1784 -7.3452 49 1 -0.8912 -2.5154 -6.9521 50 1 -1.2537 -2.3530 -5.1512 51 1 1.5832 0.4504 -2.4969 52 1 1.4525 -1.2079 -1.8598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120400061.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:40 Heat of formation + Delta-G solvation = -49.364990 kcal Electronic energy + Delta-G solvation = -32856.852060 eV Core-core repulsion = 28771.433442 eV Total energy + Delta-G solvation = -4085.418617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -48.69191 -41.70133 -40.30882 -38.03203 -37.56720 -34.95647 -33.77146 -32.39299 -32.25511 -31.74617 -28.67606 -26.93730 -26.32550 -25.10999 -23.88585 -23.61778 -23.14435 -22.04524 -21.60979 -20.69866 -19.48323 -18.49034 -17.86338 -17.61705 -17.41702 -17.23035 -16.83702 -16.40440 -16.11907 -15.77922 -15.47247 -15.38676 -15.24319 -15.06988 -14.86868 -14.76109 -14.19895 -13.87178 -13.79915 -13.74809 -13.53206 -13.33720 -12.99045 -12.93012 -12.86695 -12.59461 -12.48036 -12.40179 -12.18073 -11.98000 -11.91992 -11.80584 -11.78547 -11.61186 -11.51638 -11.41848 -11.39642 -11.03419 -10.89775 -10.61358 -10.43832 -9.39472 -8.66908 -8.26068 -5.56005 1.19522 1.26220 1.34787 1.60946 2.08593 2.33023 2.61172 3.03006 3.30670 3.39117 3.52137 3.69560 3.71717 3.83589 3.87730 3.92671 4.04282 4.06817 4.09948 4.10986 4.17881 4.28681 4.41467 4.45146 4.50230 4.56265 4.61013 4.68956 4.69805 4.78601 4.81257 4.88073 4.92390 4.97030 5.00399 5.01474 5.05733 5.12341 5.14753 5.16249 5.18512 5.25663 5.31328 5.43776 5.48702 5.58928 5.66671 5.75513 5.93168 6.15958 6.60585 6.85128 7.26219 7.53241 8.22744 8.91726 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.004793 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.703012 B = 5840.104296 C = 6459.467128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.922 3.078 4 H -0.296 1.296 5 H -0.319 1.319 6 H -0.261 1.261 7 C -0.219 4.219 8 H 0.058 0.942 9 N -0.614 5.614 10 C 0.123 3.877 11 C -0.124 4.124 12 C -0.124 4.124 13 C 0.140 3.860 14 H -0.004 1.004 15 C -0.098 4.098 16 H 0.047 0.953 17 C -0.098 4.098 18 C -0.126 4.126 19 C 0.101 3.899 20 N -0.601 5.601 21 C 0.527 3.473 22 O -0.601 6.601 23 C -0.166 4.166 24 C -0.090 4.090 25 C 0.062 3.938 26 F -0.223 7.223 27 C -0.149 4.149 28 C -0.133 4.133 29 C 0.106 3.894 30 H 0.256 0.744 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.136 0.864 49 H 0.149 0.851 50 H 0.086 0.914 51 H 0.024 0.976 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -9.221 -16.348 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.190 4.190 3 Si 0.755 3.245 4 H -0.224 1.224 5 H -0.248 1.248 6 H -0.186 1.186 7 C -0.348 4.348 8 H 0.075 0.925 9 N -0.341 5.341 10 C -0.001 4.001 11 C -0.162 4.162 12 C -0.161 4.161 13 C 0.033 3.967 14 H 0.014 0.986 15 C -0.119 4.119 16 H 0.065 0.935 17 C -0.136 4.136 18 C -0.164 4.164 19 C -0.020 4.020 20 N -0.331 5.331 21 C 0.316 3.684 22 O -0.482 6.482 23 C -0.170 4.170 24 C -0.127 4.127 25 C 0.007 3.993 26 F -0.204 7.204 27 C -0.186 4.186 28 C -0.170 4.170 29 C -0.016 4.016 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.154 0.846 49 H 0.166 0.834 50 H 0.105 0.895 51 H 0.042 0.958 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.348 -8.614 -16.049 19.641 hybrid contribution -0.371 2.088 0.951 2.324 sum 6.977 -6.527 -15.097 17.866 Atomic orbital electron populations 1.69840 1.06848 1.26569 1.54189 1.25713 0.95172 0.99177 0.98915 0.86307 0.78958 0.82709 0.76505 1.22414 1.24814 1.18624 1.18076 0.83797 0.92064 1.40852 0.92460 1.44848 1.04097 1.47619 1.37511 1.21981 0.87834 0.94041 0.96209 1.22722 0.97666 0.99926 0.95922 1.22766 0.92393 1.02080 0.98882 1.21344 0.94108 0.92775 0.88427 0.98641 1.21754 0.94316 0.98914 0.96867 0.93491 1.21510 1.01337 0.93896 0.96815 1.21943 0.93740 1.03631 0.97092 1.22056 0.97128 0.82072 1.00789 1.48452 1.45241 1.17296 1.22137 1.20420 0.78166 0.83233 0.86589 1.90673 1.58871 1.26893 1.71782 1.21203 0.94617 1.09127 0.92004 1.21590 0.98632 0.95213 0.97288 1.21921 0.93345 0.99352 0.84670 1.92738 1.75591 1.96338 1.55767 1.23142 0.91728 0.99785 1.03972 1.23279 0.98300 0.90451 1.04972 1.22483 0.93829 0.99740 0.85510 0.93434 0.93522 0.94423 0.87668 0.92958 0.87691 0.90892 0.92421 0.89441 0.87434 0.91501 0.86931 0.92027 0.88765 0.86213 0.90294 0.93645 0.91012 0.84628 0.83351 0.89499 0.95751 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.11 13.97 21.65 0.30 -58.81 16 2 C 0.01 0.51 3.35 84.86 0.28 0.80 16 3 Si 0.92 50.66 23.15 68.60 1.59 52.25 16 4 H -0.30 -16.78 6.50 99.48 0.65 -16.13 16 5 H -0.32 -18.05 7.11 99.48 0.71 -17.35 16 6 H -0.26 -13.55 7.05 99.48 0.70 -12.85 16 7 C -0.22 -11.86 7.72 84.03 0.65 -11.21 16 8 H 0.06 3.40 8.06 -2.91 -0.02 3.37 16 9 N -0.61 -27.36 2.21 -667.43 -1.48 -28.84 16 10 C 0.12 4.33 7.25 86.79 0.63 4.96 16 11 C -0.12 -3.48 7.08 31.98 0.23 -3.26 16 12 C -0.12 -3.61 6.27 31.78 0.20 -3.41 16 13 C 0.14 5.68 2.19 45.34 0.10 5.78 16 14 H 0.00 -0.18 3.55 -2.39 -0.01 -0.19 16 15 C -0.10 -3.72 2.34 -10.72 -0.03 -3.75 16 16 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 17 C -0.10 -2.78 4.71 30.62 0.14 -2.64 16 18 C -0.13 -2.77 6.08 30.67 0.19 -2.58 16 19 C 0.10 2.65 6.01 86.36 0.52 3.17 16 20 N -0.60 -22.85 2.97 -818.90 -2.43 -25.28 16 21 C 0.53 20.64 5.89 87.66 0.52 21.16 16 22 O -0.60 -30.75 16.41 -3.04 -0.05 -30.80 16 23 C -0.17 -4.21 0.87 -52.93 -0.05 -4.25 16 24 C -0.09 -1.74 5.50 30.59 0.17 -1.57 16 25 C 0.06 1.58 7.18 71.98 0.52 2.09 16 26 F -0.22 -5.77 17.36 44.97 0.78 -4.99 16 27 C -0.15 -3.35 9.82 30.59 0.30 -3.05 16 28 C -0.13 -2.50 8.31 30.59 0.25 -2.24 16 29 C 0.11 4.95 3.96 86.36 0.34 5.29 16 30 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 2.48 5.25 -2.39 -0.01 2.46 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.87 7.84 -2.39 -0.02 1.85 16 38 H 0.09 2.00 5.70 -2.38 -0.01 1.98 16 39 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 2.17 4.55 -2.39 -0.01 2.16 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.62 7.41 -2.39 -0.02 1.60 16 44 H 0.12 1.54 8.09 -2.39 -0.02 1.52 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.05 1.41 7.62 -2.38 -0.02 1.39 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.15 1.51 8.14 -2.38 -0.02 1.49 16 50 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.02 1.38 4.71 -2.39 -0.01 1.37 16 52 H 0.11 6.02 4.22 -2.39 -0.01 6.01 16 Total: -1.00 -78.57 380.57 4.53 -74.05 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.85 Total: 17.16 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 4.96 Total: 5.27 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -3.61 Total: -112.93 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.78 Total: -4.99 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 1.59 Total: 52.25 kcal Total: -78.57 4.53 -74.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120400061.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.681 kcal (2) G-P(sol) polarization free energy of solvation -78.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds