Wall clock time and date at job start Tue Mar 31 2020 21:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 C 1.50705 * 109.46669 * 180.02562 * 11 9 8 13 13 N 1.33316 * 126.54942 * 90.02684 * 12 11 9 14 14 N 1.29002 * 107.34832 * 179.97438 * 13 12 11 15 15 N 1.28773 * 108.72939 * 359.97438 * 14 13 12 16 16 C 1.46506 * 125.44672 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47011 * 359.97438 * 16 15 14 18 18 C 1.53002 * 109.47004 * 119.97501 * 16 15 14 19 19 C 1.53001 * 109.47137 * 239.97553 * 16 15 14 20 20 N 1.28882 * 109.10467 * 359.72838 * 15 14 13 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 37 37 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 38 38 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 39 39 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 40 40 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 41 41 H 1.08995 * 109.47747 * 60.00017 * 17 16 15 42 42 H 1.09007 * 109.46748 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.47252 * 299.99337 * 17 16 15 44 44 H 1.09006 * 109.47254 * 59.99926 * 18 16 15 45 45 H 1.08997 * 109.47080 * 179.97438 * 18 16 15 46 46 H 1.09000 * 109.47089 * 300.00127 * 18 16 15 47 47 H 1.09000 * 109.47098 * 60.00037 * 19 16 15 48 48 H 1.08999 * 109.46693 * 180.02562 * 19 16 15 49 49 H 1.09006 * 109.46945 * 299.99966 * 19 16 15 50 50 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 51 51 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 6 7.3390 -1.1582 1.7465 13 7 7.6053 -0.1593 2.5882 14 7 8.8814 0.0292 2.5702 15 7 9.4121 -0.8125 1.7527 16 6 10.8421 -0.9196 1.4530 17 6 11.6125 0.1258 2.2621 18 6 11.3377 -2.3187 1.8244 19 6 11.0697 -0.6777 -0.0406 20 7 8.4847 -1.5497 1.2452 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 5.1509 -1.1482 -2.6697 36 1 3.7724 -2.2740 -2.6699 37 1 3.6264 -0.6885 -3.4657 38 1 3.6648 -2.0583 0.2386 39 1 5.3354 -1.6299 2.3092 40 1 6.0816 -2.7879 1.1820 41 1 11.4504 -0.0464 3.3260 42 1 12.6764 0.0464 2.0387 43 1 11.2595 1.1225 1.9974 44 1 10.7888 -3.0635 1.2479 45 1 12.4015 -2.3985 1.6009 46 1 11.1755 -2.4910 2.8884 47 1 10.7167 0.3190 -0.3051 48 1 12.1336 -0.7578 -0.2636 49 1 10.5208 -1.4225 -0.6170 50 1 2.2490 -1.6318 1.1526 51 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134453884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:28 Heat of formation + Delta-G solvation = 94.333793 kcal Electronic energy + Delta-G solvation = -31193.552963 eV Core-core repulsion = 27166.578305 eV Total energy + Delta-G solvation = -4026.974658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.97631 -39.38175 -37.69251 -36.88322 -34.35367 -33.18267 -32.87359 -32.42541 -30.77205 -28.88723 -28.17530 -27.82902 -27.59146 -26.37166 -24.30768 -23.46514 -22.69557 -21.01688 -20.45586 -20.33938 -19.61899 -17.39027 -17.14688 -17.02892 -16.24863 -15.90185 -15.13105 -14.72677 -14.53863 -14.37282 -14.21856 -13.83274 -13.60712 -13.43735 -13.30816 -13.17534 -12.99112 -12.88536 -12.74315 -12.57736 -12.20824 -12.13236 -12.07636 -11.78722 -11.74084 -11.69443 -11.59989 -11.55005 -11.18565 -11.02132 -10.67560 -10.52704 -10.45962 -10.43914 -10.38605 -10.10615 -9.95163 -9.89668 -9.20074 -9.12698 -8.91589 -8.42474 -6.97483 -6.06004 -3.05824 1.59607 2.05976 2.57700 3.25752 3.60658 3.68826 3.73006 3.76898 4.00028 4.29095 4.38422 4.44520 4.73150 4.88454 5.02819 5.11809 5.13043 5.21098 5.28556 5.31492 5.35894 5.38010 5.40748 5.46677 5.59176 5.64949 5.65666 5.70559 5.80516 5.81716 5.88118 5.91325 5.95029 5.96833 6.09294 6.19183 6.22328 6.31838 6.33695 6.39381 6.48328 6.53071 6.56174 6.82432 7.00907 7.10043 7.87176 8.07412 8.76897 8.79651 8.81098 9.22855 10.07964 10.23673 11.40619 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.003820 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.538077 B = 7327.963047 C = 9137.408269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.083 0.917 7 C -0.161 4.161 8 N -0.697 5.697 9 C 0.539 3.461 10 O -0.554 6.554 11 C -0.053 4.053 12 C 0.203 3.797 13 N -0.265 5.265 14 N -0.070 5.070 15 N -0.138 5.138 16 C 0.181 3.819 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.157 4.157 20 N -0.305 5.305 21 N -0.727 5.727 22 C -0.316 4.316 23 H 0.062 0.938 24 C -0.039 4.039 25 N -0.945 5.945 26 Si 1.070 2.930 27 H -0.290 1.290 28 H -0.298 1.298 29 H -0.290 1.290 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.400 0.600 39 H 0.149 0.851 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.360 0.640 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.491 -2.601 -9.362 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 H 0.067 0.933 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.101 0.899 7 C -0.220 4.220 8 N -0.350 5.350 9 C 0.324 3.676 10 O -0.433 6.433 11 C -0.095 4.095 12 C -0.080 4.080 13 N -0.135 5.135 14 N -0.063 5.063 15 N -0.051 5.051 16 C 0.099 3.901 17 C -0.210 4.210 18 C -0.216 4.216 19 C -0.216 4.216 20 N -0.155 5.155 21 N -0.372 5.372 22 C -0.447 4.447 23 H 0.080 0.920 24 C -0.236 4.236 25 N -0.592 5.592 26 Si 0.901 3.099 27 H -0.218 1.218 28 H -0.225 1.225 29 H -0.216 1.216 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.237 0.763 39 H 0.166 0.834 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.195 0.805 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.797 -1.447 -7.816 16.797 hybrid contribution -1.203 -0.693 -1.578 2.101 sum 13.594 -2.140 -9.394 16.662 Atomic orbital electron populations 1.22405 0.99271 1.00613 1.00017 1.20211 0.91630 0.95729 0.85919 0.93327 1.22224 0.93995 1.01537 0.99523 1.20794 0.92436 0.97311 0.84788 0.89904 1.22201 1.01746 1.00803 0.97242 1.45842 1.17607 1.37610 1.33903 1.19894 0.81405 0.83265 0.83046 1.90643 1.62079 1.30909 1.59630 1.20006 0.88458 0.99715 1.01364 1.24679 0.94702 0.94184 0.94470 1.75923 1.03383 1.15172 1.19040 1.78891 1.03030 1.13651 1.10695 1.50319 1.09413 1.19626 1.25788 1.21247 0.71673 0.99110 0.98046 1.22065 0.99781 0.98304 1.00835 1.22213 1.02458 0.93772 1.03118 1.22209 1.03454 1.03868 0.92040 1.74495 0.97336 1.20876 1.22826 1.42467 1.79119 1.09228 1.06364 1.20043 1.40734 0.94990 0.88911 0.92011 1.25513 0.99562 0.97406 1.01098 1.70964 1.52533 1.07977 1.27721 0.83355 0.76315 0.74322 0.75904 1.21751 1.22466 1.21589 0.94525 0.93746 0.92799 0.91818 0.90736 0.92454 0.92778 0.92132 0.76283 0.83382 0.87010 0.90618 0.89597 0.90627 0.90489 0.89514 0.91429 0.91388 0.89565 0.90516 0.80515 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 C -0.13 -2.01 4.43 -26.73 -0.12 -2.13 16 5 C 0.15 2.46 2.58 -67.93 -0.17 2.28 16 6 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 7 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 8 N -0.70 -12.38 3.80 -53.81 -0.20 -12.58 16 9 C 0.54 10.89 7.79 -10.98 -0.09 10.81 16 10 O -0.55 -12.83 15.70 5.56 0.09 -12.74 16 11 C -0.05 -1.02 6.33 -29.03 -0.18 -1.20 16 12 C 0.20 4.12 6.86 -156.62 -1.07 3.04 16 13 N -0.26 -5.83 12.50 32.45 0.41 -5.42 16 14 N -0.07 -1.32 12.24 60.35 0.74 -0.58 16 15 N -0.14 -2.22 3.73 0.48 0.00 -2.22 16 16 C 0.18 1.92 1.30 -131.82 -0.17 1.75 16 17 C -0.15 -1.31 7.91 37.16 0.29 -1.01 16 18 C -0.16 -1.32 8.66 37.16 0.32 -1.00 16 19 C -0.16 -1.45 8.67 37.16 0.32 -1.13 16 20 N -0.31 -5.47 11.83 32.47 0.38 -5.08 16 21 N -0.73 -16.33 3.84 -53.43 -0.21 -16.53 16 22 C -0.32 -8.38 9.93 -15.06 -0.15 -8.52 16 23 H 0.06 1.71 7.83 -52.48 -0.41 1.29 16 24 C -0.04 -1.07 5.50 -17.43 -0.10 -1.16 16 25 N -0.94 -26.15 13.44 55.49 0.75 -25.41 16 26 Si 1.07 26.19 29.92 -169.99 -5.09 21.10 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 6.91 6.51 -40.82 -0.27 6.64 16 39 H 0.15 3.26 7.88 -51.93 -0.41 2.85 16 40 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.36 7.98 4.54 -40.82 -0.19 7.80 16 51 H 0.25 6.55 6.77 -40.82 -0.28 6.28 16 LS Contribution 415.86 15.07 6.27 6.27 Total: -1.00 -33.79 415.86 -6.24 -40.03 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -8.77 Total: 12.67 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.61 Total: 0.50 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: 1.87 Total: -67.82 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 26.19 SS G_CDS: -5.09 Total: 21.10 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.79 -6.24 -40.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134453884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.365 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds