Wall clock time and date at job start Tue Mar 31 2020 21:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.08994 * 109.47617 * 305.00348 * 5 4 2 7 7 C 1.52999 * 109.46692 * 185.00302 * 5 4 2 8 8 N 1.46495 * 109.46696 * 65.00499 * 5 4 2 9 9 C 1.34778 * 119.99718 * 204.99517 * 8 5 4 10 10 O 1.21281 * 120.00363 * 0.02562 * 9 8 5 11 11 C 1.50707 * 119.99794 * 180.02562 * 9 8 5 12 12 C 1.50705 * 109.46669 * 180.02562 * 11 9 8 13 13 N 1.33316 * 126.54942 * 90.02684 * 12 11 9 14 14 N 1.29002 * 107.34832 * 179.97438 * 13 12 11 15 15 N 1.28773 * 108.72939 * 359.97438 * 14 13 12 16 16 C 1.46506 * 125.44672 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47011 * 359.97438 * 16 15 14 18 18 C 1.53002 * 109.47004 * 119.97501 * 16 15 14 19 19 C 1.53001 * 109.47137 * 239.97553 * 16 15 14 20 20 N 1.28882 * 109.10467 * 359.72838 * 15 14 13 21 21 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 2 1 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 2 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 33 33 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 34 34 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 35 35 H 1.09000 * 109.47086 * 180.02562 * 7 5 4 36 36 H 1.09007 * 109.47428 * 300.00139 * 7 5 4 37 37 H 1.09001 * 109.47632 * 60.00304 * 7 5 4 38 38 H 0.96997 * 120.00307 * 24.99985 * 8 5 4 39 39 H 1.08997 * 109.46881 * 299.99970 * 11 9 8 40 40 H 1.08997 * 109.47052 * 60.00335 * 11 9 8 41 41 H 1.08995 * 109.47747 * 60.00017 * 17 16 15 42 42 H 1.09007 * 109.46748 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.47252 * 299.99337 * 17 16 15 44 44 H 1.09006 * 109.47254 * 59.99926 * 18 16 15 45 45 H 1.08997 * 109.47080 * 179.97438 * 18 16 15 46 46 H 1.09000 * 109.47089 * 300.00127 * 18 16 15 47 47 H 1.09000 * 109.47098 * 60.00037 * 19 16 15 48 48 H 1.08999 * 109.46693 * 180.02562 * 19 16 15 49 49 H 1.09006 * 109.46945 * 299.99966 * 19 16 15 50 50 H 0.97004 * 119.99747 * 95.00774 * 21 2 1 51 51 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.8571 0.4359 -1.2677 7 6 4.0645 -1.2248 -2.6240 8 7 4.1537 -1.3340 -0.1824 9 6 5.3747 -0.9909 0.2734 10 8 5.9859 -0.0850 -0.2527 11 6 5.9807 -1.7329 1.4368 12 6 7.3390 -1.1582 1.7465 13 7 7.6053 -0.1593 2.5882 14 7 8.8814 0.0292 2.5702 15 7 9.4121 -0.8125 1.7527 16 6 10.8421 -0.9196 1.4530 17 6 11.6125 0.1258 2.2621 18 6 11.3377 -2.3187 1.8244 19 6 11.0697 -0.6777 -0.0406 20 7 8.4847 -1.5497 1.2452 21 7 2.0183 -0.6906 1.1962 22 6 2.1490 -0.0075 2.3758 23 1 1.8918 1.0403 2.4244 24 6 2.6122 -0.6617 3.5091 25 7 2.9205 -1.9400 3.4511 26 14 2.7899 0.2699 5.1184 27 1 4.1540 0.8503 5.2062 28 1 1.7835 1.3605 5.1727 29 1 2.5735 -0.6603 6.2554 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 5.1509 -1.1482 -2.6697 36 1 3.7724 -2.2740 -2.6699 37 1 3.6264 -0.6885 -3.4657 38 1 3.6648 -2.0583 0.2386 39 1 5.3354 -1.6299 2.3092 40 1 6.0816 -2.7879 1.1820 41 1 11.4504 -0.0464 3.3260 42 1 12.6764 0.0464 2.0387 43 1 11.2595 1.1225 1.9974 44 1 10.7888 -3.0635 1.2479 45 1 12.4015 -2.3985 1.6009 46 1 11.1755 -2.4910 2.8884 47 1 10.7167 0.3190 -0.3051 48 1 12.1336 -0.7578 -0.2636 49 1 10.5208 -1.4225 -0.6170 50 1 2.2490 -1.6318 1.1526 51 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134453884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:27 Heat of formation + Delta-G solvation = 71.491340 kcal Electronic energy + Delta-G solvation = -31194.543486 eV Core-core repulsion = 27166.578305 eV Total energy + Delta-G solvation = -4027.965181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.39391 -40.92272 -38.72100 -38.38616 -36.02232 -34.66861 -34.32370 -34.05712 -32.25772 -30.40504 -29.75750 -28.53023 -28.40211 -27.65243 -25.61508 -25.45844 -24.14123 -22.44730 -21.80838 -21.61081 -21.15535 -19.35741 -18.59554 -18.06679 -17.71223 -17.30252 -16.78290 -16.30645 -16.00519 -15.56089 -15.39092 -15.25624 -15.16796 -14.93426 -14.73928 -14.48767 -14.31943 -14.03438 -13.55709 -13.48711 -13.43680 -13.24184 -13.21486 -13.03742 -12.90791 -12.87515 -12.87210 -12.70063 -12.57541 -12.50471 -12.17472 -12.15797 -11.94681 -11.88643 -11.87286 -11.78054 -11.61938 -11.32267 -11.10006 -10.86267 -10.76425 -9.95245 -8.89364 -8.19464 -5.12682 0.19876 0.94192 1.04782 1.59169 1.66042 1.69451 1.78860 2.29877 2.74160 2.82454 3.18597 3.51465 3.52847 3.57422 3.64672 3.67803 3.85392 3.95568 4.10172 4.22805 4.30617 4.42007 4.44123 4.47625 4.51042 4.51501 4.58891 4.62351 4.70018 4.70676 4.72758 4.77073 4.80144 4.81110 4.86237 4.99706 5.01517 5.05479 5.09242 5.10152 5.20963 5.31454 5.35154 5.37246 5.55762 5.66857 5.75236 6.55929 6.70401 7.23636 7.29355 7.33325 8.12998 8.26154 9.31246 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.003820 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.538077 B = 7327.963047 C = 9137.408269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.167 3.833 3 H 0.023 0.977 4 C -0.119 4.119 5 C 0.147 3.853 6 H 0.051 0.949 7 C -0.150 4.150 8 N -0.688 5.688 9 C 0.535 3.465 10 O -0.589 6.589 11 C -0.046 4.046 12 C 0.184 3.816 13 N -0.317 5.317 14 N -0.079 5.079 15 N -0.117 5.117 16 C 0.158 3.842 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.153 4.153 20 N -0.299 5.299 21 N -0.730 5.730 22 C -0.315 4.315 23 H 0.044 0.956 24 C -0.078 4.078 25 N -0.960 5.960 26 Si 1.100 2.900 27 H -0.302 1.302 28 H -0.285 1.285 29 H -0.290 1.290 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.404 0.596 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.066 0.934 42 H 0.130 0.870 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.130 0.870 46 H 0.058 0.942 47 H 0.049 0.951 48 H 0.132 0.868 49 H 0.063 0.937 50 H 0.362 0.638 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.459 -3.792 -11.403 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.157 4.157 5 C 0.043 3.957 6 H 0.069 0.931 7 C -0.208 4.208 8 N -0.339 5.339 9 C 0.320 3.680 10 O -0.471 6.471 11 C -0.089 4.089 12 C -0.099 4.099 13 N -0.186 5.186 14 N -0.071 5.071 15 N -0.034 5.034 16 C 0.079 3.921 17 C -0.207 4.207 18 C -0.210 4.210 19 C -0.211 4.211 20 N -0.150 5.150 21 N -0.375 5.375 22 C -0.447 4.447 23 H 0.062 0.938 24 C -0.272 4.272 25 N -0.609 5.609 26 Si 0.930 3.070 27 H -0.230 1.230 28 H -0.211 1.211 29 H -0.216 1.216 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.241 0.759 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.085 0.915 42 H 0.149 0.851 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.148 0.852 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.150 0.850 49 H 0.082 0.918 50 H 0.197 0.803 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.719 -2.633 -9.881 18.752 hybrid contribution -1.392 -0.288 -1.027 1.754 sum 14.326 -2.921 -10.908 18.242 Atomic orbital electron populations 1.22254 0.97572 1.01084 1.00356 1.20421 0.92739 0.94659 0.86344 0.95890 1.22138 0.92672 1.02323 0.98604 1.20950 0.93427 0.95710 0.85621 0.93107 1.22089 1.00489 1.02112 0.96092 1.45872 1.16701 1.37307 1.34027 1.20075 0.81948 0.82872 0.83070 1.90613 1.63154 1.32413 1.60919 1.19930 0.87747 1.01428 0.99745 1.24839 0.95648 0.94453 0.94932 1.75859 1.04969 1.16826 1.20990 1.78772 1.02271 1.14434 1.11666 1.51048 1.10969 1.17690 1.23670 1.22106 0.68941 1.01452 0.99596 1.22140 1.01984 0.96665 0.99879 1.22257 1.04869 0.91523 1.02332 1.22253 1.06166 1.02258 0.90409 1.74442 0.97013 1.20987 1.22593 1.42482 1.79388 1.09253 1.06403 1.20090 1.39724 0.94375 0.90496 0.93816 1.26186 1.00227 0.97831 1.02992 1.70984 1.53558 1.08258 1.28080 0.82925 0.75828 0.74016 0.74274 1.22990 1.21075 1.21624 0.91149 0.93114 0.95522 0.90027 0.87220 0.94424 0.90797 0.89588 0.75879 0.86195 0.83923 0.91536 0.85129 0.92161 0.91484 0.85158 0.92292 0.93198 0.84992 0.91808 0.80286 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.49 71.98 0.68 -4.37 16 2 C 0.17 6.14 2.89 44.99 0.13 6.27 16 3 H 0.02 0.96 8.08 -2.38 -0.02 0.95 16 4 C -0.12 -3.25 4.43 30.60 0.14 -3.12 16 5 C 0.15 4.62 2.58 44.99 0.12 4.74 16 6 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 7 C -0.15 -3.69 9.48 71.98 0.68 -3.01 16 8 N -0.69 -24.46 3.80 -442.53 -1.68 -26.14 16 9 C 0.53 22.28 7.79 87.66 0.68 22.96 16 10 O -0.59 -28.38 15.70 -3.03 -0.05 -28.43 16 11 C -0.05 -1.84 6.33 29.11 0.18 -1.65 16 12 C 0.18 7.79 6.86 138.55 0.95 8.74 16 13 N -0.32 -14.68 12.50 -51.26 -0.64 -15.32 16 14 N -0.08 -3.12 12.24 37.02 0.45 -2.66 16 15 N -0.12 -3.81 3.73 -152.39 -0.57 -4.38 16 16 C 0.16 3.12 1.30 3.60 0.00 3.13 16 17 C -0.15 -2.30 7.91 71.98 0.57 -1.73 16 18 C -0.15 -2.18 8.66 71.98 0.62 -1.56 16 19 C -0.15 -2.51 8.67 71.98 0.62 -1.89 16 20 N -0.30 -10.91 11.83 -51.20 -0.61 -11.52 16 21 N -0.73 -32.95 3.84 -322.94 -1.24 -34.19 16 22 C -0.31 -17.07 9.93 84.03 0.83 -16.23 16 23 H 0.04 2.49 7.83 -2.91 -0.02 2.47 16 24 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 25 N -0.96 -53.95 13.44 21.65 0.29 -53.66 16 26 Si 1.10 54.34 29.92 68.60 2.05 56.40 16 27 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.40 13.80 6.51 -92.71 -0.60 13.20 16 39 H 0.12 5.56 7.88 -2.39 -0.02 5.54 16 40 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 45 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 50 H 0.36 16.00 4.54 -92.71 -0.42 15.58 16 51 H 0.25 13.36 6.77 -92.71 -0.63 12.73 16 Total: -1.00 -78.16 415.86 4.74 -73.42 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: 0.04 Total: 38.09 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.69 Total: 8.40 kcal Atomic # 7 Polarization: -143.88 SS G_CDS: -3.99 Total: -147.87 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 14 Polarization: 54.34 SS G_CDS: 2.05 Total: 56.40 kcal Total: -78.16 4.74 -73.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134453884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.913 kcal (2) G-P(sol) polarization free energy of solvation -78.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds