Wall clock time and date at job start Tue Mar 31 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99339 * 2 1 4 4 H 1.48501 * 109.47161 * 269.99980 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00172 * 3 2 1 6 6 H 1.48497 * 109.46878 * 150.00381 * 3 2 1 7 7 C 1.38809 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 195.44522 * 7 2 1 9 9 N 1.36932 * 120.00352 * 15.45168 * 7 2 1 10 10 C 1.47511 * 118.75660 * 26.09449 * 9 7 2 11 11 C 1.53572 * 111.03021 * 138.35328 * 10 9 7 12 12 C 1.51543 * 109.57954 * 320.02679 * 11 10 9 13 13 O 1.42146 * 108.75816 * 91.39687 * 12 11 10 14 14 C 1.38019 * 119.43946 * 272.77046 * 13 12 11 15 15 H 1.09002 * 109.46916 * 303.42753 * 14 13 12 16 16 C 1.52998 * 109.47052 * 183.43205 * 14 13 12 17 17 N 1.46506 * 109.46853 * 65.00081 * 16 14 13 18 18 C 1.34785 * 119.99554 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99477 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.46776 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.47066 * 179.97438 * 21 20 18 23 23 C 1.52996 * 109.47369 * 295.00145 * 22 21 20 24 24 C 1.53006 * 109.47051 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47034 * 60.00318 * 24 23 22 26 26 C 1.53005 * 109.46776 * 299.99636 * 25 24 23 27 27 C 1.52998 * 109.47089 * 174.99800 * 22 21 20 28 28 C 1.45120 * 118.76030 * 206.07967 * 9 7 2 29 29 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.16861 * 258.75439 * 10 9 7 31 31 H 1.09002 * 109.16813 * 18.01103 * 10 9 7 32 32 H 1.08999 * 109.45563 * 199.99078 * 11 10 9 33 33 H 1.08997 * 109.44862 * 80.05594 * 11 10 9 34 34 H 1.09002 * 109.58736 * 331.61149 * 12 11 10 35 35 H 1.08998 * 109.58384 * 211.18254 * 12 11 10 36 36 H 1.09002 * 109.47542 * 185.00024 * 16 14 13 37 37 H 1.09006 * 109.47603 * 305.00214 * 16 14 13 38 38 H 0.96990 * 120.00327 * 359.97438 * 17 16 14 39 39 H 1.08997 * 109.47183 * 299.99571 * 20 18 17 40 40 H 1.08997 * 109.47550 * 59.99744 * 20 18 17 41 41 H 1.08997 * 109.47092 * 299.99844 * 21 20 18 42 42 H 1.09005 * 109.47089 * 60.00058 * 21 20 18 43 43 H 1.09011 * 109.46847 * 55.00108 * 22 21 20 44 44 H 1.08998 * 109.47038 * 299.99626 * 23 22 21 45 45 H 1.08998 * 109.47304 * 59.99723 * 23 22 21 46 46 H 1.08998 * 109.47193 * 299.99897 * 24 23 22 47 47 H 1.09003 * 109.46844 * 179.97438 * 24 23 22 48 48 H 1.08997 * 109.47411 * 179.97438 * 25 24 23 49 49 H 1.09004 * 109.47355 * 59.99345 * 25 24 23 50 50 H 1.08998 * 109.47212 * 300.00275 * 26 25 24 51 51 H 1.08999 * 109.46639 * 180.02562 * 26 25 24 52 52 H 1.09003 * 109.47306 * 300.00141 * 27 22 21 53 53 H 1.08998 * 109.47205 * 60.00443 * 27 22 21 54 54 H 1.09004 * 109.46167 * 149.28169 * 28 9 7 55 55 H 1.09004 * 109.45622 * 29.32335 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0611 -1.2190 0.2486 9 7 1.3629 -2.3665 -0.3170 10 6 0.1710 -2.3027 -1.1837 11 6 0.1766 -3.4422 -2.2133 12 6 1.5842 -3.6473 -2.7360 13 8 2.2340 -4.6209 -1.9296 14 6 2.8931 -4.2226 -0.7842 15 1 3.6430 -3.4735 -1.0384 16 6 3.5770 -5.4316 -0.1428 17 7 4.6232 -5.9324 -1.0377 18 6 5.3629 -7.0004 -0.6785 19 8 5.1626 -7.5465 0.3857 20 6 6.4395 -7.5152 -1.5988 21 6 7.1233 -8.7243 -0.9575 22 6 8.2159 -9.2474 -1.8921 23 6 7.5770 -9.7781 -3.1770 24 6 8.6698 -10.3006 -4.1118 25 6 9.4363 -11.4294 -3.4196 26 6 10.0753 -10.8986 -2.1346 27 6 8.9821 -10.3762 -1.1995 28 6 1.8755 -3.6165 0.2126 29 1 -0.4851 0.8399 -0.0004 30 1 -0.7245 -2.3819 -0.5672 31 1 0.1607 -1.3474 -1.7085 32 1 -0.4845 -3.1866 -3.0413 33 1 -0.1723 -4.3602 -1.7405 34 1 2.1329 -2.7067 -2.6870 35 1 1.5435 -3.9956 -3.7680 36 1 4.0224 -5.1357 0.8071 37 1 2.8405 -6.2164 0.0302 38 1 4.7832 -5.4960 -1.8890 39 1 5.9946 -7.8107 -2.5490 40 1 7.1762 -6.7306 -1.7710 41 1 7.5683 -8.4285 -0.0075 42 1 6.3868 -9.5092 -0.7850 43 1 8.9038 -8.4377 -2.1359 44 1 6.8892 -10.5878 -2.9332 45 1 7.0312 -8.9740 -3.6704 46 1 9.3573 -9.4907 -4.3556 47 1 8.2145 -10.6791 -5.0271 48 1 10.2145 -11.8020 -4.0857 49 1 8.7488 -12.2393 -3.1757 50 1 10.7628 -10.0887 -2.3784 51 1 10.6218 -11.7027 -1.6417 52 1 9.4373 -9.9981 -0.2841 53 1 8.2943 -11.1859 -0.9557 54 1 1.0509 -4.3142 0.3591 55 1 2.3682 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150669915.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:04 Heat of formation + Delta-G solvation = -115.718009 kcal Electronic energy + Delta-G solvation = -29966.059813 eV Core-core repulsion = 26001.224218 eV Total energy + Delta-G solvation = -3964.835595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.01192 -40.28733 -39.42955 -37.00937 -35.92568 -34.75237 -33.63744 -33.41062 -31.60457 -30.81525 -29.68861 -27.32914 -27.05553 -25.38404 -24.09552 -23.35923 -22.29992 -21.87254 -21.37278 -20.91825 -20.55992 -18.87441 -18.12443 -17.65059 -17.31369 -16.81792 -16.59215 -16.45560 -16.20064 -15.65572 -15.52031 -15.34322 -15.00360 -14.81685 -14.73845 -14.47353 -14.36255 -14.17464 -13.76050 -13.59636 -13.35254 -13.13560 -13.00056 -12.92638 -12.79175 -12.72010 -12.52834 -12.43967 -12.39688 -12.07020 -11.99409 -11.93145 -11.77249 -11.62386 -11.49139 -11.31987 -11.25769 -10.96631 -10.78284 -10.74666 -10.54565 -10.27888 -10.04889 -8.73738 -7.90185 -5.37831 1.45325 1.46482 1.55131 1.71829 2.25250 2.49161 2.76155 3.24781 3.55552 3.73834 3.80426 3.85843 4.01222 4.08653 4.13702 4.18484 4.21864 4.26721 4.35440 4.45820 4.52161 4.53478 4.58719 4.63226 4.64397 4.68194 4.71468 4.74142 4.74240 4.80488 4.86529 4.88221 4.91430 5.04929 5.13822 5.14707 5.18326 5.22122 5.24341 5.28234 5.33037 5.39084 5.40929 5.45791 5.46875 5.49367 5.56370 5.60230 5.69091 5.74278 6.34463 6.62712 6.74433 7.13134 7.31908 7.85221 8.26577 9.15410 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020556 B = 0.001887 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.793394 B =14833.833358 C =15185.343267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.269 4.269 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.185 3.815 11 C -0.165 4.165 12 C 0.092 3.908 13 O -0.391 6.391 14 C 0.088 3.912 15 H 0.046 0.954 16 C 0.142 3.858 17 N -0.715 5.715 18 C 0.505 3.495 19 O -0.592 6.592 20 C -0.132 4.132 21 C -0.094 4.094 22 C -0.080 4.080 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.116 4.116 28 C 0.122 3.878 29 H 0.250 0.750 30 H -0.008 1.008 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.414 0.586 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.062 0.938 52 H 0.058 0.942 53 H 0.054 0.946 54 H 0.041 0.959 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.434 -19.222 -10.872 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.242 4.242 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.399 4.399 8 H 0.086 0.914 9 N -0.327 5.327 10 C 0.060 3.940 11 C -0.204 4.204 12 C 0.016 3.984 13 O -0.310 6.310 14 C 0.026 3.974 15 H 0.064 0.936 16 C 0.017 3.983 17 N -0.366 5.366 18 C 0.294 3.706 19 O -0.473 6.473 20 C -0.171 4.171 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.154 4.154 28 C -0.006 4.006 29 H 0.059 0.941 30 H 0.010 0.990 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.250 0.750 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.081 0.919 52 H 0.077 0.923 53 H 0.073 0.927 54 H 0.060 0.940 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.140 -19.645 -10.148 27.977 hybrid contribution -0.319 1.748 0.342 1.809 sum 16.821 -17.897 -9.807 26.447 Atomic orbital electron populations 1.70230 1.06604 1.25815 1.55383 1.25787 0.96034 1.01454 1.00974 0.85295 0.78052 0.79618 0.77644 1.20925 1.22418 1.19422 1.19511 0.92577 0.85865 1.41912 0.91429 1.44028 1.31521 1.02097 1.55076 1.20774 0.86942 0.96109 0.90128 1.22633 0.98893 0.99157 0.99702 1.22077 0.91230 0.91615 0.93506 1.86100 1.70524 1.37926 1.36478 1.22261 0.93602 0.94382 0.87126 0.93594 1.21131 0.89453 0.94823 0.92904 1.45946 1.35732 1.31895 1.23061 1.21479 0.82763 0.79113 0.87290 1.90675 1.70851 1.59290 1.26474 1.21769 0.96356 1.00022 0.98977 1.21316 0.97470 0.96141 0.98296 1.21137 0.96161 0.97820 0.94733 1.21668 0.97836 1.00681 0.95325 1.21536 0.97689 0.98354 0.98064 1.21555 0.99526 0.98025 0.96770 1.21530 0.97498 1.00631 0.95862 1.21588 0.97628 0.97909 0.98260 1.21575 0.95781 0.87794 0.95438 0.94118 0.98976 0.93491 0.89673 0.92219 0.94107 0.87283 0.90710 0.91970 0.74976 0.86697 0.86675 0.92758 0.92960 0.90295 0.92701 0.90965 0.91629 0.91745 0.91620 0.92537 0.91725 0.91915 0.92275 0.92691 0.94047 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 11.00 21.65 0.24 -54.08 16 2 C -0.05 -2.56 4.89 84.86 0.41 -2.14 16 3 Si 0.97 43.89 29.58 68.60 2.03 45.91 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.27 -14.25 9.46 84.03 0.80 -13.46 16 8 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 9 N -0.61 -29.37 2.23 -698.15 -1.55 -30.93 16 10 C 0.19 8.78 4.70 86.38 0.41 9.19 16 11 C -0.16 -5.90 5.79 30.31 0.18 -5.72 16 12 C 0.09 2.94 6.37 71.50 0.46 3.40 16 13 O -0.39 -12.70 9.38 -117.91 -1.11 -13.81 16 14 C 0.09 2.94 2.68 31.21 0.08 3.02 16 15 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 16 C 0.14 4.20 5.34 86.38 0.46 4.67 16 17 N -0.71 -17.38 5.49 -463.03 -2.54 -19.92 16 18 C 0.50 12.70 7.83 87.66 0.69 13.39 16 19 O -0.59 -20.22 15.98 -3.02 -0.05 -20.26 16 20 C -0.13 -2.07 5.46 29.85 0.16 -1.91 16 21 C -0.09 -1.63 3.97 30.59 0.12 -1.51 16 22 C -0.08 -1.02 2.19 -10.80 -0.02 -1.05 16 23 C -0.12 -1.36 4.96 30.60 0.15 -1.21 16 24 C -0.12 -1.21 5.92 30.60 0.18 -1.03 16 25 C -0.12 -1.27 5.92 30.60 0.18 -1.08 16 26 C -0.12 -1.29 5.93 30.61 0.18 -1.11 16 27 C -0.12 -1.53 5.21 30.61 0.16 -1.37 16 28 C 0.12 5.01 5.12 87.25 0.45 5.45 16 29 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 30 H -0.01 -0.42 8.04 -2.39 -0.02 -0.44 16 31 H 0.05 2.47 6.37 -2.39 -0.02 2.46 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.06 2.13 8.01 -2.39 -0.02 2.11 16 34 H 0.04 1.50 7.40 -2.39 -0.02 1.49 16 35 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.41 8.14 8.46 -92.72 -0.78 7.36 16 39 H 0.11 1.37 6.56 -2.39 -0.02 1.35 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 42 H 0.05 1.08 8.10 -2.38 -0.02 1.06 16 43 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.72 6.56 -2.39 -0.02 0.71 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 54 H 0.04 1.70 8.11 -2.38 -0.02 1.68 16 55 H 0.05 2.07 7.98 -2.38 -0.02 2.05 16 Total: -1.00 -66.55 416.87 2.11 -64.44 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.05 Total: 21.11 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.04 Total: 7.53 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -3.86 Total: -104.92 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.15 Total: -34.08 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.55 2.11 -64.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150669915.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.273 kcal (2) G-P(sol) polarization free energy of solvation -66.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds