Wall clock time and date at job start Tue Mar 31 2020 20:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36943 * 120.00195 * 2 1 4 4 H 1.07989 * 120.00658 * 203.96336 * 3 2 1 5 5 C 1.38818 * 119.99107 * 23.96503 * 3 2 1 6 6 N 1.31614 * 120.00455 * 9.76395 * 5 3 2 7 7 Si 1.86807 * 119.99473 * 189.77105 * 5 3 2 8 8 H 1.48494 * 109.47243 * 64.99543 * 7 5 3 9 9 H 1.48500 * 109.47040 * 184.99888 * 7 5 3 10 10 H 1.48498 * 109.46737 * 304.99573 * 7 5 3 11 11 C 1.46497 * 120.00257 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46805 * 263.89626 * 11 2 1 13 13 H 1.08994 * 109.58472 * 298.13551 * 12 11 2 14 14 C 1.53194 * 109.58411 * 58.56355 * 12 11 2 15 15 C 1.53046 * 109.30820 * 174.42148 * 14 12 11 16 16 C 1.53033 * 109.53994 * 298.63162 * 15 14 12 17 17 C 1.52765 * 109.38322 * 61.24298 * 16 15 14 18 18 N 1.46926 * 109.58487 * 177.85234 * 12 11 2 19 19 C 1.34772 * 120.63522 * 6.58411 * 18 12 11 20 20 O 1.21280 * 119.99674 * 4.21082 * 19 18 12 21 21 C 1.50697 * 120.00390 * 184.21666 * 19 18 12 22 22 N 1.46901 * 109.47160 * 174.22993 * 21 19 18 23 23 C 1.47192 * 110.99621 * 178.84340 * 22 21 19 24 24 C 1.52981 * 108.72922 * 54.36852 * 23 22 21 25 25 N 1.46009 * 110.04334 * 50.29289 * 24 23 22 26 26 C 1.33709 * 122.92576 * 342.08995 * 25 24 23 27 27 O 1.21283 * 118.62284 * 181.42837 * 26 25 24 28 28 C 1.46902 * 110.99967 * 301.72942 * 22 21 19 29 29 H 1.09006 * 109.46479 * 275.75770 * 1 2 3 30 30 H 1.08998 * 109.47980 * 35.75747 * 1 2 3 31 31 H 1.08998 * 109.47088 * 155.76866 * 1 2 3 32 32 H 0.97002 * 119.99833 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47737 * 143.89830 * 11 2 1 34 34 H 1.09002 * 109.47178 * 23.89334 * 11 2 1 35 35 H 1.09001 * 109.49926 * 294.36949 * 14 12 11 36 36 H 1.08995 * 109.49834 * 54.47588 * 14 12 11 37 37 H 1.08998 * 109.46158 * 58.66012 * 15 14 12 38 38 H 1.09001 * 109.45550 * 178.61338 * 15 14 12 39 39 H 1.08999 * 109.49861 * 181.31562 * 16 15 14 40 40 H 1.09001 * 109.50130 * 301.38406 * 16 15 14 41 41 H 1.08997 * 109.51420 * 185.70222 * 17 16 15 42 42 H 1.09002 * 109.43260 * 65.42126 * 17 16 15 43 43 H 1.09003 * 109.47321 * 54.22913 * 21 19 18 44 44 H 1.08997 * 109.46959 * 294.23079 * 21 19 18 45 45 H 1.08998 * 109.59471 * 294.59513 * 23 22 21 46 46 H 1.09001 * 109.58964 * 174.14066 * 23 22 21 47 47 H 1.09002 * 109.37867 * 290.11088 * 24 23 22 48 48 H 1.09007 * 109.37559 * 170.46679 * 24 23 22 49 49 H 0.97005 * 118.53339 * 161.81835 * 25 24 23 50 50 H 1.09001 * 109.38370 * 47.09309 * 28 22 21 51 51 H 1.08997 * 109.38488 * 166.87391 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1598 1.2263 -0.3798 5 6 1.5452 2.3362 0.4884 6 7 0.3959 2.2564 1.1246 7 14 2.3632 3.9976 0.2423 8 1 2.4088 4.3170 -1.2072 9 1 1.5856 5.0426 0.9553 10 1 3.7455 3.9536 0.7832 11 6 2.1975 -1.2687 -0.0006 12 6 2.5853 -1.6342 1.4337 13 1 3.2443 -0.8673 1.8407 14 6 1.3233 -1.7414 2.2954 15 6 1.7042 -2.2419 3.6906 16 6 2.3339 -3.6324 3.5814 17 6 3.6024 -3.5493 2.7342 18 7 3.2752 -2.9314 1.4419 19 6 3.5968 -3.5456 0.2862 20 8 3.3860 -2.9935 -0.7729 21 6 4.2182 -4.9183 0.3098 22 7 4.3449 -5.4221 -1.0643 23 6 4.9746 -6.7524 -1.0823 24 6 4.1844 -7.6825 -0.1599 25 7 2.7611 -7.6114 -0.4778 26 6 2.2222 -6.6088 -1.1793 27 8 1.0254 -6.6148 -1.3760 28 6 3.0361 -5.4721 -1.7295 29 1 -0.3632 0.1031 1.0226 30 1 -0.3635 0.8339 -0.6005 31 1 -0.3633 -0.9371 -0.4218 32 1 -0.0263 3.0602 1.4661 33 1 3.0982 -1.1680 -0.6060 34 1 1.5655 -2.0530 -0.4172 35 1 0.8536 -0.7611 2.3762 36 1 0.6269 -2.4423 1.8351 37 1 2.4196 -1.5535 4.1406 38 1 0.8112 -2.2956 4.3134 39 1 2.5836 -3.9980 4.5774 40 1 1.6278 -4.3156 3.1095 41 1 3.9971 -4.5520 2.5703 42 1 4.3451 -2.9422 3.2518 43 1 3.5865 -5.5932 0.8874 44 1 5.2052 -4.8624 0.7688 45 1 6.0030 -6.6749 -0.7293 46 1 4.9632 -7.1485 -2.0977 47 1 4.3390 -7.3812 0.8762 48 1 4.5340 -8.7063 -0.2930 49 1 2.1812 -8.3254 -0.1695 50 1 2.5093 -4.5326 -1.5625 51 1 3.1796 -5.6210 -2.7997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158316242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:36 Heat of formation + Delta-G solvation = -5.981483 kcal Electronic energy + Delta-G solvation = -32206.634756 eV Core-core repulsion = 28143.017350 eV Total energy + Delta-G solvation = -4063.617406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.16451 -39.92169 -37.72981 -36.88699 -35.41720 -34.31875 -32.68581 -31.97003 -30.14024 -30.05275 -28.89488 -26.50839 -25.64382 -25.20196 -24.27567 -23.20378 -22.20370 -20.86949 -20.36115 -19.57485 -18.54801 -17.60613 -17.30037 -16.61413 -16.24255 -16.10330 -15.59349 -15.36125 -15.08951 -14.58767 -14.54832 -14.30431 -14.14680 -13.92319 -13.60181 -13.37688 -13.16322 -13.00775 -12.88260 -12.75892 -12.59229 -12.27060 -11.90561 -11.81324 -11.59418 -11.47749 -11.04588 -10.90950 -10.78819 -10.63551 -10.55360 -10.50074 -10.36120 -10.18575 -10.01682 -9.79894 -9.67072 -9.45348 -8.86705 -8.53110 -8.34994 -8.12309 -6.57720 -5.59753 -3.06345 2.41653 2.81781 2.83864 3.10874 3.45845 3.50710 3.52592 3.64293 4.21008 4.47274 4.49732 4.51674 4.61570 4.75036 4.84712 4.94561 5.01983 5.10013 5.16449 5.17964 5.31516 5.37735 5.47216 5.54433 5.55774 5.59493 5.73512 5.81221 5.97112 6.02018 6.10008 6.23254 6.25139 6.31152 6.49278 6.57698 6.60153 6.60485 6.74773 6.92946 6.98184 7.05586 7.09808 7.42388 7.53691 7.73305 7.88555 7.93669 7.95473 8.44738 8.59125 9.38437 10.02958 10.52942 11.43919 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.003457 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.041074 B = 8097.828049 C = 8563.169787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.601 5.601 3 C -0.246 4.246 4 H 0.065 0.935 5 C 0.001 3.999 6 N -0.911 5.911 7 Si 0.902 3.098 8 H -0.286 1.286 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.164 3.836 12 C 0.125 3.875 13 H 0.071 0.929 14 C -0.122 4.122 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.508 3.492 20 O -0.507 6.507 21 C 0.025 3.975 22 N -0.504 5.504 23 C 0.036 3.964 24 C 0.071 3.929 25 N -0.729 5.729 26 C 0.485 3.515 27 O -0.546 6.546 28 C 0.027 3.973 29 H 0.031 0.969 30 H 0.038 0.962 31 H -0.006 1.006 32 H 0.250 0.750 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.082 0.918 49 H 0.397 0.603 50 H 0.142 0.858 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.333 -22.318 4.001 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.377 4.377 4 H 0.083 0.917 5 C -0.196 4.196 6 N -0.557 5.557 7 Si 0.732 3.268 8 H -0.213 1.213 9 H -0.218 1.218 10 H -0.210 1.210 11 C 0.037 3.963 12 C 0.021 3.979 13 H 0.089 0.911 14 C -0.160 4.160 15 C -0.157 4.157 16 C -0.171 4.171 17 C -0.017 4.017 18 N -0.338 5.338 19 C 0.295 3.705 20 O -0.383 6.383 21 C -0.106 4.106 22 N -0.228 5.228 23 C -0.093 4.093 24 C -0.055 4.055 25 N -0.383 5.383 26 C 0.271 3.729 27 O -0.421 6.421 28 C -0.103 4.103 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.013 0.987 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.233 0.767 50 H 0.160 0.840 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.915 -21.325 3.018 23.710 hybrid contribution -0.228 -0.098 0.974 1.005 sum 9.687 -21.424 3.992 23.848 Atomic orbital electron populations 1.20845 0.83004 0.95086 0.99286 1.44207 1.01789 1.01122 1.85289 1.19184 0.98700 0.85951 1.33822 0.91675 1.25021 0.97689 0.98335 0.98580 1.70032 1.18004 1.27162 1.40470 0.86374 0.78576 0.84134 0.77701 1.21263 1.21813 1.21026 1.21510 0.96898 0.87194 0.90676 1.22536 0.92359 0.80975 1.02053 0.91055 1.21924 0.97484 1.03127 0.93447 1.21531 1.00319 0.95411 0.98423 1.21834 0.97275 0.98709 0.99331 1.21611 0.97357 0.97756 0.84937 1.48473 1.58243 1.22333 1.04770 1.20227 0.79118 0.86938 0.84264 1.90749 1.52934 1.64387 1.30185 1.22247 1.02457 0.95178 0.90739 1.62256 1.21439 1.23258 1.15803 1.22658 0.98900 0.86896 1.00805 1.22126 0.81127 1.02033 1.00246 1.45684 1.09792 1.25875 1.56963 1.21580 0.89271 0.84156 0.77874 1.90779 1.15659 1.77792 1.57904 1.22857 0.88403 0.98448 1.00612 0.95053 0.94317 0.98748 0.93927 0.91090 0.93823 0.88391 0.93047 0.92011 0.92275 0.91355 0.91998 0.90877 0.91319 0.91919 0.87455 0.88075 0.89105 0.91382 0.89923 0.76745 0.84030 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 8.14 59.85 0.49 4.69 16 2 N -0.60 -15.73 2.51 -181.12 -0.45 -16.18 16 3 C -0.25 -6.96 9.65 -15.05 -0.15 -7.11 16 4 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 5 C 0.00 0.04 5.17 -17.43 -0.09 -0.05 16 6 N -0.91 -26.62 10.59 55.49 0.59 -26.03 16 7 Si 0.90 22.36 29.57 -169.99 -5.03 17.33 16 8 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.16 3.73 3.64 -4.04 -0.01 3.71 16 12 C 0.13 2.40 3.18 -67.60 -0.21 2.19 16 13 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 14 C -0.12 -2.25 4.64 -26.61 -0.12 -2.37 16 15 C -0.12 -1.71 5.89 -26.69 -0.16 -1.86 16 16 C -0.13 -1.49 6.06 -26.83 -0.16 -1.65 16 17 C 0.11 1.16 6.32 -3.93 -0.02 1.14 16 18 N -0.60 -9.07 2.98 -165.48 -0.49 -9.57 16 19 C 0.51 7.66 7.02 -10.99 -0.08 7.59 16 20 O -0.51 -9.53 9.60 5.56 0.05 -9.48 16 21 C 0.02 0.25 3.19 -4.98 -0.02 0.24 16 22 N -0.50 -5.18 4.88 -237.56 -1.16 -6.34 16 23 C 0.04 0.22 6.06 -3.67 -0.02 0.20 16 24 C 0.07 0.36 6.44 -4.32 -0.03 0.33 16 25 N -0.73 -6.26 5.32 -61.07 -0.33 -6.59 16 26 C 0.49 6.24 7.20 -11.69 -0.08 6.16 16 27 O -0.55 -9.55 17.82 5.56 0.10 -9.45 16 28 C 0.03 0.34 5.44 -5.20 -0.03 0.31 16 29 H 0.03 0.84 6.12 -51.93 -0.32 0.53 16 30 H 0.04 1.07 7.36 -51.93 -0.38 0.69 16 31 H -0.01 -0.14 7.78 -51.93 -0.40 -0.55 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 33 H 0.07 1.73 6.25 -51.93 -0.32 1.41 16 34 H 0.04 1.01 6.81 -51.93 -0.35 0.66 16 35 H 0.10 2.20 6.32 -51.93 -0.33 1.87 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.58 5.91 -51.93 -0.31 0.27 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.59 5.34 -51.93 -0.28 0.31 16 44 H 0.11 0.84 8.02 -51.93 -0.42 0.42 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 47 H 0.07 0.29 6.90 -51.93 -0.36 -0.06 16 48 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 49 H 0.40 3.07 8.84 -40.82 -0.36 2.71 16 50 H 0.14 2.30 5.23 -51.93 -0.27 2.03 16 51 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -34.59 379.18 -10.00 -44.59 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.30 Total: 2.49 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -0.70 Total: 13.51 kcal Atomic # 7 Polarization: -62.86 SS G_CDS: -1.84 Total: -64.70 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.15 Total: -18.93 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.59 -10.00 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158316242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.608 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds