Wall clock time and date at job start Tue Mar 31 2020 21:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48498 * 109.46944 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46888 * 300.00170 * 3 2 1 6 6 H 1.48499 * 109.46961 * 59.99759 * 3 2 1 7 7 C 1.38812 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00129 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46852 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46705 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.46577 * 180.02562 * 12 11 10 14 14 C 1.46505 * 120.00183 * 269.99750 * 13 12 11 15 15 C 1.52993 * 109.47213 * 279.85109 * 14 13 12 16 16 C 1.54265 * 110.03275 * 303.54742 * 15 14 13 17 17 C 1.54893 * 104.19677 * 217.10654 * 16 15 14 18 18 C 1.54889 * 102.74699 * 37.94288 * 17 16 15 19 19 C 1.53874 * 110.03184 * 186.38297 * 15 14 13 20 20 C 1.34779 * 119.99944 * 90.00498 * 13 12 11 21 21 O 1.21282 * 120.00290 * 6.22467 * 20 13 12 22 22 C 1.50704 * 120.00182 * 186.22913 * 20 13 12 23 23 C 1.52992 * 109.47471 * 173.32470 * 22 20 13 24 24 H 1.09002 * 110.55065 * 307.87766 * 23 22 20 25 25 C 1.54994 * 110.62046 * 184.99940 * 23 22 20 26 26 C 1.54809 * 102.09200 * 204.47339 * 25 23 22 27 27 C 1.54102 * 104.18594 * 20.88254 * 26 25 23 28 28 O 1.43736 * 107.42427 * 1.95183 * 27 26 25 29 29 H 0.97010 * 119.99789 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00122 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.46611 * 60.00534 * 10 9 7 32 32 H 1.08999 * 109.47355 * 300.00259 * 10 9 7 33 33 H 1.09001 * 109.46751 * 60.00388 * 11 10 9 34 34 H 1.08999 * 109.47445 * 300.00318 * 11 10 9 35 35 H 1.09003 * 109.46830 * 60.00604 * 12 11 10 36 36 H 1.08997 * 109.47092 * 299.99732 * 12 11 10 37 37 H 1.09003 * 109.47006 * 39.85189 * 14 13 12 38 38 H 1.09004 * 109.46600 * 159.84942 * 14 13 12 39 39 H 1.09004 * 110.01976 * 64.99313 * 15 14 13 40 40 H 1.08996 * 110.48678 * 335.78347 * 16 15 14 41 41 H 1.09002 * 110.48807 * 98.43055 * 16 15 14 42 42 H 1.09001 * 110.75312 * 279.63076 * 17 16 15 43 43 H 1.09001 * 110.91379 * 156.33281 * 17 16 15 44 44 H 1.09004 * 110.48487 * 203.38192 * 18 17 16 45 45 H 1.08990 * 110.60020 * 80.79223 * 18 17 16 46 46 H 1.09005 * 110.03102 * 238.57323 * 19 15 14 47 47 H 1.09002 * 110.03432 * 359.97438 * 19 15 14 48 48 H 1.09003 * 109.47303 * 53.31876 * 22 20 13 49 49 H 1.09007 * 109.46713 * 293.32733 * 22 20 13 50 50 H 1.08998 * 110.90761 * 86.27902 * 25 23 22 51 51 H 1.08995 * 110.93633 * 322.68426 * 25 23 22 52 52 H 1.08993 * 110.48931 * 262.20453 * 26 25 23 53 53 H 1.09003 * 110.60056 * 139.60898 * 26 25 23 54 54 H 1.09001 * 109.87871 * 121.45425 * 27 26 25 55 55 H 1.09007 * 109.87674 * 242.45133 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8286 -6.1448 0.0018 13 7 0.8765 -7.2582 0.0018 14 6 0.4001 -7.8146 1.2706 15 6 1.4532 -8.7695 1.8362 16 6 1.7756 -9.8711 0.8056 17 6 1.9845 -11.1441 1.6630 18 6 0.9095 -10.9922 2.7678 19 6 0.9025 -9.4823 3.0838 20 6 0.4391 -7.7708 -1.1654 21 8 0.9166 -7.3884 -2.2126 22 6 -0.6437 -8.8191 -1.1694 23 6 -1.0692 -9.1073 -2.6104 24 1 -1.3192 -8.1812 -3.1281 25 6 -2.2679 -10.0895 -2.6395 26 6 -2.1297 -10.7284 -4.0428 27 6 -0.6567 -10.4858 -4.4248 28 8 -0.0284 -9.8207 -3.3162 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 -0.0002 31 1 2.6845 -3.7145 0.8906 32 1 2.6846 -3.7146 -0.8894 33 1 0.4367 -4.7621 -0.8886 34 1 0.4372 -4.7618 0.8913 35 1 2.4552 -6.2020 0.8919 36 1 2.4552 -6.2030 -0.8882 37 1 0.2253 -7.0052 1.9795 38 1 -0.5300 -8.3577 1.1026 39 1 2.3586 -8.2183 2.0903 40 1 0.9404 -10.0069 0.1185 41 1 2.6857 -9.6266 0.2578 42 1 2.9845 -11.1580 2.0964 43 1 1.8080 -12.0437 1.0734 44 1 1.1876 -11.5657 3.6520 45 1 -0.0661 -11.3094 2.3997 46 1 1.5411 -9.2776 3.9431 47 1 -0.1149 -9.1476 3.2865 48 1 -1.5016 -8.4575 -0.6025 49 1 -0.2656 -9.7336 -0.7123 50 1 -3.2124 -9.5533 -2.5476 51 1 -2.1729 -10.8432 -1.8579 52 1 -2.7941 -10.2363 -4.7531 53 1 -2.3418 -11.7967 -4.0003 54 1 -0.1614 -11.4380 -4.6148 55 1 -0.6030 -9.8565 -5.3133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177231954.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:30 Heat of formation + Delta-G solvation = -111.278320 kcal Electronic energy + Delta-G solvation = -30636.344065 eV Core-core repulsion = 26671.700989 eV Total energy + Delta-G solvation = -3964.643076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45566 -40.06086 -38.97366 -37.45262 -36.21652 -34.24900 -33.34070 -32.68580 -31.69561 -30.45056 -29.44923 -28.13299 -26.70123 -25.62088 -24.56424 -22.93884 -22.43982 -22.06674 -21.53800 -20.71910 -19.75399 -19.14414 -18.35384 -17.63987 -17.35800 -16.71081 -16.64407 -16.43112 -16.33434 -15.95135 -15.89964 -15.50578 -15.28209 -15.12587 -14.53809 -14.48587 -14.26788 -14.21121 -13.65742 -13.55134 -13.39279 -13.10344 -13.03173 -12.81862 -12.67905 -12.60520 -12.45235 -12.23510 -12.15362 -12.06847 -11.95900 -11.91227 -11.86536 -11.84216 -11.80581 -11.72551 -11.54096 -11.29129 -11.22279 -10.98194 -10.73995 -10.57320 -9.60896 -9.05222 -7.98498 -5.28573 1.45155 1.47062 1.57313 1.67199 2.00413 2.54080 2.93232 3.34878 3.47754 3.61433 3.74097 3.76496 3.80211 3.86446 3.90182 4.03321 4.04111 4.10915 4.18696 4.22492 4.31305 4.44709 4.46647 4.48701 4.51355 4.56890 4.62326 4.65082 4.68327 4.73423 4.78023 4.85284 4.85972 4.91210 4.91740 4.95668 4.96602 4.99472 5.10028 5.13440 5.16811 5.24448 5.26869 5.28381 5.33074 5.40706 5.45805 5.54118 5.55689 5.62915 6.01623 6.23781 6.46034 7.24741 7.29339 8.03693 8.28141 9.25525 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010088 B = 0.002615 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.918094 B =10705.294608 C =12746.430416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.748 5.748 10 C 0.155 3.845 11 C -0.118 4.118 12 C 0.129 3.871 13 N -0.607 5.607 14 C 0.107 3.893 15 C -0.106 4.106 16 C -0.125 4.125 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.115 4.115 20 C 0.507 3.493 21 O -0.580 6.580 22 C -0.136 4.136 23 C 0.083 3.917 24 H 0.048 0.952 25 C -0.141 4.141 26 C -0.150 4.150 27 C 0.034 3.966 28 O -0.394 6.394 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.032 0.968 32 H 0.010 0.990 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.136 0.864 49 H 0.127 0.873 50 H 0.097 0.903 51 H 0.097 0.903 52 H 0.080 0.920 53 H 0.097 0.903 54 H 0.092 0.908 55 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 -31.915 3.764 32.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.391 5.391 10 C 0.028 3.972 11 C -0.157 4.157 12 C 0.005 3.995 13 N -0.339 5.339 14 C -0.015 4.015 15 C -0.126 4.126 16 C -0.162 4.162 17 C -0.162 4.162 18 C -0.157 4.157 19 C -0.153 4.153 20 C 0.296 3.704 21 O -0.459 6.459 22 C -0.175 4.175 23 C 0.025 3.975 24 H 0.066 0.934 25 C -0.179 4.179 26 C -0.188 4.188 27 C -0.043 4.043 28 O -0.314 6.314 29 H 0.061 0.939 30 H 0.204 0.796 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.154 0.846 49 H 0.145 0.855 50 H 0.116 0.884 51 H 0.115 0.885 52 H 0.099 0.901 53 H 0.116 0.884 54 H 0.110 0.890 55 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.688 -31.628 3.276 32.141 hybrid contribution 0.213 1.513 -0.560 1.627 sum -4.475 -30.115 2.716 30.567 Atomic orbital electron populations 1.69839 1.06692 1.26150 1.59423 1.25648 0.96522 1.01321 1.03465 0.85007 0.78159 0.79353 0.76838 1.19028 1.21984 1.21489 1.19701 0.91555 0.85357 1.41448 0.90642 1.42596 1.05638 1.01347 1.89498 1.20684 0.94032 0.84789 0.97653 1.21832 0.98474 0.94054 1.01310 1.21170 0.91185 0.84086 1.03025 1.48009 1.45419 1.33646 1.06776 1.22085 0.97854 0.97571 0.83978 1.22160 0.98650 0.95972 0.95811 1.22574 1.00799 0.95281 0.97597 1.22488 0.99374 0.97123 0.97192 1.22351 0.99195 0.95828 0.98368 1.22133 1.02015 0.95008 0.96125 1.21232 0.83663 0.82610 0.82856 1.90722 1.59347 1.62649 1.33168 1.22114 0.98497 0.99156 0.97687 1.22979 0.87660 0.95289 0.91580 0.93396 1.23178 0.97912 0.98555 0.98225 1.22929 0.95473 1.03246 0.97152 1.23303 0.94188 0.97370 0.89399 1.88994 1.33072 1.66467 1.42869 0.93874 0.79551 0.94996 0.97197 0.94373 0.91078 0.88458 0.92156 0.89594 0.87484 0.91692 0.90979 0.94336 0.92108 0.91328 0.91140 0.90550 0.91537 0.90027 0.84638 0.85533 0.88417 0.88454 0.90141 0.88445 0.88964 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.34 13.06 21.65 0.28 -61.06 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 7 C -0.25 -14.66 9.99 84.03 0.84 -13.82 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -40.83 5.60 -343.43 -1.92 -42.76 16 10 C 0.16 6.72 6.26 86.38 0.54 7.26 16 11 C -0.12 -4.16 5.65 30.60 0.17 -3.99 16 12 C 0.13 3.73 5.45 86.38 0.47 4.21 16 13 N -0.61 -14.58 2.18 -821.79 -1.79 -16.37 16 14 C 0.11 1.65 4.70 86.38 0.41 2.05 16 15 C -0.11 -1.52 3.19 -10.07 -0.03 -1.56 16 16 C -0.13 -2.02 5.60 31.67 0.18 -1.84 16 17 C -0.12 -1.56 6.91 31.89 0.22 -1.34 16 18 C -0.12 -1.12 6.83 31.67 0.22 -0.90 16 19 C -0.11 -1.17 6.46 31.32 0.20 -0.97 16 20 C 0.51 14.13 6.82 87.66 0.60 14.73 16 21 O -0.58 -22.68 15.16 5.44 0.08 -22.59 16 22 C -0.14 -2.45 3.76 29.85 0.11 -2.34 16 23 C 0.08 1.74 2.77 31.27 0.09 1.83 16 24 H 0.05 1.26 8.00 -2.39 -0.02 1.24 16 25 C -0.14 -1.70 6.59 31.89 0.21 -1.49 16 26 C -0.15 -1.81 7.01 31.58 0.22 -1.59 16 27 C 0.03 0.63 7.69 72.35 0.56 1.19 16 28 O -0.39 -10.36 10.76 -140.51 -1.51 -11.88 16 29 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 30 H 0.37 21.49 7.67 -92.71 -0.71 20.78 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.10 2.36 7.88 -2.39 -0.02 2.34 16 36 H 0.06 2.05 7.34 -2.39 -0.02 2.04 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.10 6.00 -2.39 -0.01 1.08 16 39 H 0.06 1.09 7.94 -2.38 -0.02 1.07 16 40 H 0.07 1.14 3.99 -2.39 -0.01 1.13 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.08 0.63 7.67 -2.39 -0.02 0.61 16 48 H 0.14 1.56 7.37 -2.39 -0.02 1.55 16 49 H 0.13 1.82 5.09 -2.38 -0.01 1.81 16 50 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.10 0.82 8.06 -2.39 -0.02 0.80 16 52 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 55 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -79.54 422.24 2.77 -76.77 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.14 Total: 31.01 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.47 Total: -2.72 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -3.43 Total: -120.18 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.43 Total: -34.47 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -79.54 2.77 -76.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177231954.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.505 kcal (2) G-P(sol) polarization free energy of solvation -79.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds