Wall clock time and date at job start Tue Mar 31 2020 21:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00492 * 2 1 4 4 H 1.48499 * 109.47194 * 270.00450 * 3 2 1 5 5 H 1.48503 * 109.46838 * 29.99952 * 3 2 1 6 6 H 1.48496 * 109.47351 * 149.99610 * 3 2 1 7 7 C 1.38812 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00619 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00325 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46993 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.46496 * 119.99759 * 90.00495 * 13 12 11 15 15 C 1.52998 * 109.47337 * 89.99861 * 14 13 12 16 16 C 1.54264 * 110.03126 * 292.90434 * 15 14 13 17 17 C 1.54966 * 104.16413 * 217.13469 * 16 15 14 18 18 C 1.54892 * 102.77500 * 37.89044 * 17 16 15 19 19 C 1.53883 * 110.03372 * 175.69040 * 15 14 13 20 20 C 1.34771 * 120.00084 * 270.00167 * 13 12 11 21 21 O 1.21280 * 119.99939 * 359.97438 * 20 13 12 22 22 C 1.50696 * 119.99966 * 180.02562 * 20 13 12 23 23 C 1.52998 * 109.47192 * 179.97438 * 22 20 13 24 24 O 1.42902 * 112.84863 * 53.80576 * 23 22 20 25 25 C 1.53773 * 113.61829 * 282.49524 * 23 22 20 26 26 C 1.53782 * 87.08601 * 220.02063 * 25 23 22 27 27 C 1.53784 * 87.07868 * 25.43191 * 26 25 23 28 28 H 0.97001 * 119.99453 * 359.97438 * 1 2 3 29 29 H 0.97010 * 119.99766 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.46764 * 60.00175 * 10 9 7 31 31 H 1.08996 * 109.46739 * 300.00083 * 10 9 7 32 32 H 1.09004 * 109.47298 * 60.00068 * 11 10 9 33 33 H 1.09004 * 109.47552 * 299.99940 * 11 10 9 34 34 H 1.09004 * 109.46930 * 59.99996 * 12 11 10 35 35 H 1.09000 * 109.47312 * 299.99939 * 12 11 10 36 36 H 1.09001 * 109.47057 * 210.00204 * 14 13 12 37 37 H 1.08999 * 109.47333 * 329.99764 * 14 13 12 38 38 H 1.09000 * 110.01675 * 54.29884 * 15 14 13 39 39 H 1.08999 * 110.49084 * 335.78789 * 16 15 14 40 40 H 1.08997 * 110.48677 * 98.42718 * 16 15 14 41 41 H 1.08992 * 110.72341 * 279.57930 * 17 16 15 42 42 H 1.09004 * 110.92442 * 156.29225 * 17 16 15 43 43 H 1.08999 * 110.48873 * 203.40477 * 18 17 16 44 44 H 1.09002 * 110.59922 * 80.81226 * 18 17 16 45 45 H 1.08991 * 110.03137 * 238.56912 * 19 15 14 46 46 H 1.09001 * 110.02659 * 359.97438 * 19 15 14 47 47 H 1.09004 * 109.47246 * 300.00009 * 22 20 13 48 48 H 1.08997 * 109.47440 * 59.99942 * 22 20 13 49 49 H 0.96703 * 113.99778 * 309.66353 * 24 23 22 50 50 H 1.09006 * 113.61331 * 334.56970 * 25 23 22 51 51 H 1.09003 * 113.61256 * 105.46625 * 25 23 22 52 52 H 1.09001 * 113.60929 * 270.88558 * 26 25 23 53 53 H 1.08998 * 113.61613 * 139.98284 * 26 25 23 54 54 H 1.09000 * 113.61349 * 220.01961 * 27 26 25 55 55 H 1.08997 * 113.69014 * 89.13253 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.8286 -6.1447 -0.0018 13 7 0.8765 -7.2582 -0.0018 14 6 0.4002 -7.8146 -1.2706 15 6 1.3307 -8.9457 -1.7128 16 6 2.7191 -8.3777 -2.0725 17 6 3.1735 -9.2272 -3.2863 18 6 1.8573 -9.4236 -4.0789 19 6 0.7829 -9.6109 -2.9878 20 6 0.4389 -7.7707 1.1653 21 8 0.8337 -7.3104 2.2156 22 6 -0.5400 -8.9165 1.1653 23 6 -0.8706 -9.3048 2.6078 24 8 -1.3221 -8.1980 3.3908 25 6 0.2289 -10.1363 3.2893 26 6 -0.9004 -10.9716 3.9154 27 6 -1.7703 -10.5469 2.7205 28 1 -0.4849 0.8401 0.0004 29 1 0.3554 -2.3880 -0.0005 30 1 2.6845 -3.7146 0.8894 31 1 2.6846 -3.7145 -0.8905 32 1 0.4373 -4.7617 -0.8914 33 1 0.4366 -4.7621 0.8886 34 1 2.4552 -6.2029 0.8882 35 1 2.4553 -6.2021 -0.8918 36 1 -0.6093 -8.2046 -1.1401 37 1 0.3922 -7.0328 -2.0300 38 1 1.4243 -9.6846 -0.9169 39 1 2.6409 -7.3266 -2.3506 40 1 3.4099 -8.5022 -1.2387 41 1 3.5732 -10.1864 -2.9577 42 1 3.9082 -8.6888 -3.8851 43 1 1.9200 -10.3109 -4.7088 44 1 1.6382 -8.5429 -4.6827 45 1 0.6116 -10.6726 -2.8109 46 1 -0.1460 -9.1280 -3.2911 47 1 -1.4527 -8.6145 0.6516 48 1 -0.0995 -9.7707 0.6513 49 1 -0.7477 -7.4216 3.3423 50 1 0.8498 -10.6961 2.5899 51 1 0.8123 -9.5744 4.0187 52 1 -1.2520 -10.5835 4.8713 53 1 -0.6888 -12.0405 3.9434 54 1 -2.8008 -10.3166 2.9907 55 1 -1.6971 -11.2183 1.8649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177312064.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:27 Heat of formation + Delta-G solvation = -95.196944 kcal Electronic energy + Delta-G solvation = -30777.615297 eV Core-core repulsion = 26813.669562 eV Total energy + Delta-G solvation = -3963.945735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.69658 -40.09040 -38.96333 -37.40974 -36.28673 -35.39453 -34.22197 -32.29488 -31.05979 -30.26139 -29.47834 -27.14076 -26.62989 -25.66967 -25.02935 -23.71091 -22.53168 -21.49349 -20.76075 -20.55626 -20.03831 -19.16703 -18.18045 -17.79095 -17.11339 -16.76469 -16.56279 -16.38290 -16.13855 -15.89614 -15.80770 -15.46567 -15.33391 -15.10803 -14.63610 -14.56768 -14.18176 -13.94078 -13.79314 -13.49185 -13.38775 -13.20260 -13.07464 -12.81690 -12.77673 -12.54960 -12.45278 -12.17547 -12.12551 -12.09457 -11.92162 -11.87036 -11.83508 -11.77112 -11.75108 -11.68514 -11.40958 -11.37026 -11.21907 -10.96931 -10.66141 -10.58288 -9.66681 -9.05206 -7.98370 -5.28508 1.45012 1.47775 1.55577 1.56560 1.95194 2.54048 3.15545 3.34926 3.36563 3.63862 3.70172 3.73252 3.74881 3.80193 3.88770 3.92800 3.99299 4.13452 4.23023 4.29823 4.38975 4.42473 4.48509 4.53073 4.58013 4.62872 4.65931 4.69227 4.71446 4.76560 4.79583 4.85409 4.85921 4.90312 4.93062 4.97668 5.05554 5.09211 5.14955 5.15159 5.26517 5.27241 5.32731 5.32823 5.38661 5.44043 5.45603 5.48151 5.55433 5.62862 6.23631 6.36777 6.71618 7.17158 7.29223 8.04105 8.27747 9.25462 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008682 B = 0.002907 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.255956 B = 9629.693997 C =12185.262578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.749 5.749 10 C 0.156 3.844 11 C -0.120 4.120 12 C 0.127 3.873 13 N -0.599 5.599 14 C 0.106 3.894 15 C -0.102 4.102 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.126 4.126 19 C -0.114 4.114 20 C 0.509 3.491 21 O -0.581 6.581 22 C -0.152 4.152 23 C 0.108 3.892 24 O -0.572 6.572 25 C -0.163 4.163 26 C -0.134 4.134 27 C -0.117 4.117 28 H 0.252 0.748 29 H 0.372 0.628 30 H 0.013 0.987 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.115 0.885 48 H 0.136 0.864 49 H 0.384 0.616 50 H 0.102 0.898 51 H 0.046 0.954 52 H 0.065 0.935 53 H 0.089 0.911 54 H 0.069 0.931 55 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.185 -31.242 -6.098 31.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.391 5.391 10 C 0.029 3.971 11 C -0.159 4.159 12 C 0.003 3.997 13 N -0.329 5.329 14 C -0.016 4.016 15 C -0.122 4.122 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.152 4.152 20 C 0.299 3.701 21 O -0.462 6.462 22 C -0.191 4.191 23 C 0.067 3.933 24 O -0.384 6.384 25 C -0.200 4.200 26 C -0.172 4.172 27 C -0.154 4.154 28 H 0.061 0.939 29 H 0.204 0.796 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.133 0.867 48 H 0.154 0.846 49 H 0.238 0.762 50 H 0.120 0.880 51 H 0.065 0.935 52 H 0.083 0.917 53 H 0.108 0.892 54 H 0.088 0.912 55 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.088 -31.305 -5.421 31.771 hybrid contribution 0.572 2.036 0.199 2.124 sum 0.660 -29.270 -5.222 29.739 Atomic orbital electron populations 1.69829 1.06738 1.26214 1.59361 1.25647 0.96484 1.01352 1.03463 0.85080 0.77619 0.79052 0.77648 1.20915 1.22085 1.19447 1.19666 0.91563 0.85352 1.41551 0.90560 1.42600 1.05608 1.01389 1.89516 1.20682 0.94001 0.84741 0.97689 1.21853 0.98520 0.94350 1.01218 1.21343 0.91036 0.83825 1.03484 1.48019 1.44823 1.33336 1.06731 1.22111 0.98599 0.96715 0.84184 1.22190 0.94731 0.96658 0.98578 1.22528 0.96311 0.99461 0.97921 1.22509 0.97626 0.99815 0.96333 1.22368 0.94561 1.01795 0.97631 1.22138 0.98708 1.01199 0.93163 1.21277 0.81492 0.84260 0.83040 1.90564 1.59811 1.63478 1.32394 1.22417 0.99485 0.97807 0.99387 1.22197 0.96327 0.86757 0.88054 1.86309 1.54829 1.26278 1.70948 1.23595 0.97091 0.98734 1.00608 1.22725 0.96278 1.00505 0.97649 1.23124 0.98410 0.93910 1.00000 0.93900 0.79636 0.96931 0.95133 0.91645 0.94165 0.91481 0.88176 0.88062 0.89813 0.90332 0.92008 0.92670 0.91301 0.91998 0.91020 0.92016 0.90322 0.90653 0.86710 0.84647 0.76225 0.87989 0.93475 0.91667 0.89238 0.91237 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.33 13.06 21.65 0.28 -61.05 16 2 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 3 Si 0.98 47.28 29.55 68.60 2.03 49.31 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.75 -40.33 5.60 -343.47 -1.92 -42.26 16 10 C 0.16 6.53 6.26 86.38 0.54 7.07 16 11 C -0.12 -4.08 5.65 30.59 0.17 -3.91 16 12 C 0.13 3.28 5.10 86.38 0.44 3.72 16 13 N -0.60 -12.41 2.39 -821.81 -1.96 -14.37 16 14 C 0.11 1.42 4.36 86.38 0.38 1.80 16 15 C -0.10 -1.10 3.14 -10.07 -0.03 -1.13 16 16 C -0.12 -1.73 5.23 31.70 0.17 -1.56 16 17 C -0.13 -1.48 6.91 31.91 0.22 -1.26 16 18 C -0.13 -1.25 6.83 31.67 0.22 -1.03 16 19 C -0.11 -0.91 6.46 31.32 0.20 -0.71 16 20 C 0.51 11.96 7.43 87.66 0.65 12.61 16 21 O -0.58 -18.71 13.17 15.91 0.21 -18.50 16 22 C -0.15 -2.36 3.90 29.85 0.12 -2.25 16 23 C 0.11 2.17 1.10 -10.27 -0.01 2.16 16 24 O -0.57 -16.49 13.39 -130.04 -1.74 -18.23 16 25 C -0.16 -3.08 7.16 31.12 0.22 -2.86 16 26 C -0.13 -2.15 8.02 31.12 0.25 -1.90 16 27 C -0.12 -1.68 7.47 31.12 0.23 -1.45 16 28 H 0.25 15.35 8.31 -92.71 -0.77 14.57 16 29 H 0.37 21.33 7.67 -92.70 -0.71 20.62 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.99 7.42 -2.38 -0.02 1.98 16 35 H 0.10 2.19 5.65 -2.39 -0.01 2.18 16 36 H 0.10 0.95 6.44 -2.39 -0.02 0.94 16 37 H 0.08 1.22 7.95 -2.39 -0.02 1.20 16 38 H 0.08 0.79 7.35 -2.39 -0.02 0.77 16 39 H 0.06 0.98 6.21 -2.39 -0.01 0.97 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.07 0.53 7.67 -2.39 -0.02 0.51 16 47 H 0.11 1.50 7.40 -2.38 -0.02 1.48 16 48 H 0.14 1.19 7.21 -2.39 -0.02 1.17 16 49 H 0.38 12.13 6.20 -74.06 -0.46 11.67 16 50 H 0.10 1.47 8.03 -2.38 -0.02 1.45 16 51 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 54 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 55 H 0.13 0.94 8.10 -2.39 -0.02 0.92 16 Total: -1.00 -74.46 422.42 1.66 -72.81 By element: Atomic # 1 Polarization: 41.12 SS G_CDS: -0.30 Total: 40.81 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.07 Total: -8.53 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -3.60 Total: -117.68 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.53 Total: -36.73 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -74.46 1.66 -72.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177312064.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.392 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds