Wall clock time and date at job start Tue Mar 31 2020 21:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47432 * 2 1 4 4 C 1.53001 * 109.46915 * 239.99923 * 2 1 3 5 5 N 1.46500 * 109.47458 * 120.00115 * 2 1 3 6 6 N 1.28719 * 125.31830 * 359.97438 * 5 2 1 7 7 N 1.28985 * 108.99130 * 180.02562 * 6 5 2 8 8 C 1.34187 * 107.24860 * 359.97438 * 7 6 5 9 9 C 1.48008 * 126.69835 * 179.97438 * 8 7 6 10 10 O 1.21533 * 120.00028 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99670 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72365 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47510 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47271 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.46959 * 179.97438 * 17 16 15 19 19 C 1.36936 * 119.99757 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00471 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99709 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99873 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48494 * 109.47201 * 209.99726 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99700 * 23 21 19 27 27 N 1.28869 * 125.32316 * 180.28325 * 5 2 1 28 28 H 1.09008 * 109.46645 * 300.00113 * 1 2 3 29 29 H 1.08997 * 109.47115 * 59.99450 * 1 2 3 30 30 H 1.09004 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47076 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46963 * 300.00087 * 3 2 1 33 33 H 1.09000 * 109.46991 * 60.00288 * 3 2 1 34 34 H 1.08996 * 109.47477 * 300.00104 * 4 2 1 35 35 H 1.08997 * 109.47172 * 60.00102 * 4 2 1 36 36 H 1.09001 * 109.47539 * 180.02562 * 4 2 1 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 39 39 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 40 40 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 41 41 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 42 42 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 43 43 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 44 44 H 1.09008 * 109.47165 * 300.00083 * 15 14 13 45 45 H 1.08998 * 109.47285 * 60.00156 * 15 14 13 46 46 H 1.09000 * 109.46793 * 300.00282 * 16 15 14 47 47 H 1.08998 * 109.47049 * 59.99608 * 16 15 14 48 48 H 1.08994 * 109.47190 * 299.99512 * 17 16 15 49 49 H 1.08998 * 109.47408 * 59.99824 * 17 16 15 50 50 H 0.97000 * 120.00380 * 0.02562 * 18 17 16 51 51 H 0.97005 * 120.00046 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2763 -1.2161 2.1072 7 7 2.0308 -1.7388 3.0133 8 6 3.3029 -1.5261 2.6432 9 6 4.5190 -1.9474 3.3740 10 8 5.6183 -1.6885 2.9249 11 7 4.4074 -2.6181 4.5377 12 6 5.6111 -3.0404 5.2581 13 6 5.2079 -3.7824 6.5340 14 6 6.4651 -4.2240 7.2859 15 6 6.0619 -4.9666 8.5615 16 6 7.3190 -5.4076 9.3139 17 6 6.9158 -6.1507 10.5891 18 7 8.1195 -6.5735 11.3092 19 6 8.0061 -7.2606 12.4882 20 1 7.0294 -7.4904 12.8876 21 6 9.1467 -7.6617 13.1703 22 7 9.0377 -8.3216 14.3038 23 14 10.8362 -7.2637 12.4800 24 1 11.2872 -5.9489 13.0026 25 1 11.7994 -8.3165 12.8909 26 1 10.7650 -7.2092 10.9977 27 7 3.2581 -0.8621 1.5035 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7217 -1.2491 37 1 3.5301 -2.8251 4.8961 38 1 6.2008 -3.7024 4.6238 39 1 6.2044 -2.1642 5.5194 40 1 4.6184 -3.1205 7.1682 41 1 4.6147 -4.6588 6.2726 42 1 7.0543 -4.8861 6.6515 43 1 7.0587 -3.3479 7.5473 44 1 5.4724 -4.3048 9.1963 45 1 5.4686 -5.8426 8.2999 46 1 7.9088 -6.0692 8.6794 47 1 7.9120 -4.5314 9.5756 48 1 6.3259 -5.4895 11.2238 49 1 6.3230 -7.0270 10.3270 50 1 8.9969 -6.3662 10.9511 51 1 9.8347 -8.6016 14.7806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178535100.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:42 Heat of formation + Delta-G solvation = 79.274030 kcal Electronic energy + Delta-G solvation = -27492.340338 eV Core-core repulsion = 23464.712640 eV Total energy + Delta-G solvation = -4027.627698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.95164 -40.05611 -38.28567 -36.95317 -35.62337 -34.24512 -33.92786 -33.03783 -31.89613 -30.40303 -28.45896 -28.36222 -27.59568 -25.66773 -25.02392 -23.80492 -22.07841 -21.63656 -21.28057 -20.83802 -20.74611 -18.50170 -17.93508 -17.45510 -17.29548 -16.45684 -16.33185 -15.46428 -15.08504 -14.93693 -14.79173 -14.54080 -14.41546 -14.32650 -13.88319 -13.73096 -13.32274 -13.24076 -13.16972 -13.05661 -12.75655 -12.68366 -12.65027 -12.41645 -12.33567 -11.96893 -11.82625 -11.63768 -11.57321 -11.51451 -11.44676 -11.00266 -10.89100 -10.87968 -10.77818 -10.76817 -10.34155 -10.27697 -10.05285 -9.56650 -9.54670 -8.84580 -7.17815 -5.72855 -3.07759 0.51350 0.96791 1.10290 2.34477 2.65131 3.36469 3.40989 3.44084 3.48362 3.50642 3.69734 3.81047 4.06728 4.47354 4.60031 4.62893 4.63293 4.64108 4.70259 4.73254 4.79938 4.83750 4.85681 4.88214 5.05819 5.16036 5.20165 5.25526 5.28172 5.32850 5.38613 5.50358 5.53886 5.57541 5.59733 5.65801 5.78404 5.88694 5.94270 6.04843 6.15050 6.24434 6.27885 6.41655 6.82753 6.86844 6.88527 7.52723 7.72818 8.04579 8.46666 9.26464 9.99084 10.19497 11.45797 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.041901 B = 0.001209 C = 0.001187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.077437 B =23144.544183 C =23589.701152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.161 4.161 5 N -0.123 5.123 6 N -0.053 5.053 7 N -0.257 5.257 8 C 0.124 3.876 9 C 0.616 3.384 10 O -0.508 6.508 11 N -0.705 5.705 12 C 0.118 3.882 13 C -0.132 4.132 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.131 4.131 17 C 0.156 3.844 18 N -0.759 5.759 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.003 3.997 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 N -0.243 5.243 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.412 0.588 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.025 0.975 49 H 0.025 0.975 50 H 0.360 0.640 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.848 21.226 -36.465 46.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.095 3.905 3 C -0.220 4.220 4 C -0.219 4.219 5 N -0.038 5.038 6 N -0.045 5.045 7 N -0.132 5.132 8 C -0.160 4.160 9 C 0.396 3.604 10 O -0.379 6.379 11 N -0.358 5.358 12 C -0.004 4.004 13 C -0.170 4.170 14 C -0.154 4.154 15 C -0.152 4.152 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 N -0.096 5.096 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.248 0.752 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.193 0.807 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.738 21.375 -36.716 46.846 hybrid contribution 1.261 0.041 -0.091 1.265 sum -18.477 21.415 -36.808 46.420 Atomic orbital electron populations 1.22126 0.89615 1.04850 1.04617 1.21583 0.96741 0.92915 0.79228 1.22275 1.03567 0.91741 1.04369 1.22274 1.03560 1.01182 0.94933 1.50801 1.00858 1.34053 1.18102 1.78898 1.21497 1.08737 0.95393 1.76139 0.99999 1.17597 1.19435 1.25296 0.94559 1.02507 0.93673 1.16085 0.84660 0.78854 0.80822 1.90873 1.25323 1.54695 1.66982 1.45743 1.11645 1.56505 1.21928 1.21603 0.86075 0.99714 0.93017 1.21848 0.99541 1.00510 0.95121 1.21516 0.96449 1.00648 0.96792 1.21494 0.98157 0.99985 0.95558 1.21781 0.97393 1.00313 0.97372 1.20638 0.89987 0.95784 0.90717 1.42749 1.02751 1.69027 1.25894 1.19099 0.94975 1.27128 0.96184 0.89263 1.24679 0.97328 1.00359 0.96923 1.69708 1.28236 1.43839 1.16648 0.86521 0.85584 0.77775 0.78524 1.21085 1.21727 1.20327 1.74993 1.02794 1.16779 1.15080 0.90414 0.88910 0.90406 0.90165 0.88779 0.91205 0.91205 0.88771 0.90174 0.75233 0.90689 0.90677 0.90895 0.90908 0.91575 0.91564 0.91829 0.91832 0.92147 0.92130 0.95690 0.95743 0.80724 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.31 7.90 37.16 0.29 -0.02 16 2 C 0.18 0.67 1.30 -131.82 -0.17 0.50 16 3 C -0.16 -0.43 8.66 37.16 0.32 -0.11 16 4 C -0.16 -0.43 8.66 37.16 0.32 -0.11 16 5 N -0.12 -0.97 3.72 0.52 0.00 -0.97 16 6 N -0.05 -0.48 12.21 60.35 0.74 0.25 16 7 N -0.26 -2.62 12.26 32.10 0.39 -2.23 16 8 C 0.12 1.33 8.14 -156.24 -1.27 0.06 16 9 C 0.62 6.86 7.84 -12.25 -0.10 6.76 16 10 O -0.51 -7.19 17.10 5.34 0.09 -7.10 16 11 N -0.71 -5.98 5.55 -61.19 -0.34 -6.32 16 12 C 0.12 0.96 5.67 -4.04 -0.02 0.94 16 13 C -0.13 -0.97 5.33 -26.73 -0.14 -1.11 16 14 C -0.12 -1.05 5.21 -26.73 -0.14 -1.19 16 15 C -0.11 -1.29 5.21 -26.73 -0.14 -1.43 16 16 C -0.13 -1.97 5.33 -26.73 -0.14 -2.11 16 17 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 18 N -0.76 -18.80 5.41 -59.92 -0.32 -19.13 16 19 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.94 -30.03 13.97 55.49 0.78 -29.26 16 23 Si 0.89 22.62 27.74 -169.99 -4.71 17.91 16 24 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 27 N -0.24 -2.49 11.85 32.11 0.38 -2.11 16 28 H 0.08 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.00 8.14 -51.93 -0.42 -0.42 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.41 2.80 8.22 -40.82 -0.34 2.47 16 38 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.36 8.66 5.53 -40.82 -0.23 8.43 16 51 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 423.12 15.07 6.38 6.38 Total: -1.00 -36.60 423.12 -7.12 -43.72 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.03 Total: 0.94 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -1.47 Total: -2.10 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 1.62 Total: -59.75 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.09 Total: -7.10 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -36.60 -7.12 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178535100.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.996 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds