Wall clock time and date at job start Tue Mar 31 2020 21:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47432 * 2 1 4 4 C 1.53001 * 109.46915 * 239.99923 * 2 1 3 5 5 N 1.46500 * 109.47458 * 120.00115 * 2 1 3 6 6 N 1.28719 * 125.31830 * 359.97438 * 5 2 1 7 7 N 1.28985 * 108.99130 * 180.02562 * 6 5 2 8 8 C 1.34187 * 107.24860 * 359.97438 * 7 6 5 9 9 C 1.48008 * 126.69835 * 179.97438 * 8 7 6 10 10 O 1.21533 * 120.00028 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99670 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72365 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47000 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47510 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47271 * 180.02562 * 16 15 14 18 18 N 1.46499 * 109.46959 * 179.97438 * 17 16 15 19 19 C 1.36936 * 119.99757 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00471 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99709 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99873 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00209 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99559 * 23 21 19 25 25 H 1.48494 * 109.47201 * 209.99726 * 23 21 19 26 26 H 1.48498 * 109.47011 * 329.99700 * 23 21 19 27 27 N 1.28869 * 125.32316 * 180.28325 * 5 2 1 28 28 H 1.09008 * 109.46645 * 300.00113 * 1 2 3 29 29 H 1.08997 * 109.47115 * 59.99450 * 1 2 3 30 30 H 1.09004 * 109.47264 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47076 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46963 * 300.00087 * 3 2 1 33 33 H 1.09000 * 109.46991 * 60.00288 * 3 2 1 34 34 H 1.08996 * 109.47477 * 300.00104 * 4 2 1 35 35 H 1.08997 * 109.47172 * 60.00102 * 4 2 1 36 36 H 1.09001 * 109.47539 * 180.02562 * 4 2 1 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 39 39 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 40 40 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 41 41 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 42 42 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 43 43 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 44 44 H 1.09008 * 109.47165 * 300.00083 * 15 14 13 45 45 H 1.08998 * 109.47285 * 60.00156 * 15 14 13 46 46 H 1.09000 * 109.46793 * 300.00282 * 16 15 14 47 47 H 1.08998 * 109.47049 * 59.99608 * 16 15 14 48 48 H 1.08994 * 109.47190 * 299.99512 * 17 16 15 49 49 H 1.08998 * 109.47408 * 59.99824 * 17 16 15 50 50 H 0.97000 * 120.00380 * 0.02562 * 18 17 16 51 51 H 0.97005 * 120.00046 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2763 -1.2161 2.1072 7 7 2.0308 -1.7388 3.0133 8 6 3.3029 -1.5261 2.6432 9 6 4.5190 -1.9474 3.3740 10 8 5.6183 -1.6885 2.9249 11 7 4.4074 -2.6181 4.5377 12 6 5.6111 -3.0404 5.2581 13 6 5.2079 -3.7824 6.5340 14 6 6.4651 -4.2240 7.2859 15 6 6.0619 -4.9666 8.5615 16 6 7.3190 -5.4076 9.3139 17 6 6.9158 -6.1507 10.5891 18 7 8.1195 -6.5735 11.3092 19 6 8.0061 -7.2606 12.4882 20 1 7.0294 -7.4904 12.8876 21 6 9.1467 -7.6617 13.1703 22 7 9.0377 -8.3216 14.3038 23 14 10.8362 -7.2637 12.4800 24 1 11.2872 -5.9489 13.0026 25 1 11.7994 -8.3165 12.8909 26 1 10.7650 -7.2092 10.9977 27 7 3.2581 -0.8621 1.5035 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6766 -0.2075 -2.1392 36 1 3.1299 -0.7217 -1.2491 37 1 3.5301 -2.8251 4.8961 38 1 6.2008 -3.7024 4.6238 39 1 6.2044 -2.1642 5.5194 40 1 4.6184 -3.1205 7.1682 41 1 4.6147 -4.6588 6.2726 42 1 7.0543 -4.8861 6.6515 43 1 7.0587 -3.3479 7.5473 44 1 5.4724 -4.3048 9.1963 45 1 5.4686 -5.8426 8.2999 46 1 7.9088 -6.0692 8.6794 47 1 7.9120 -4.5314 9.5756 48 1 6.3259 -5.4895 11.2238 49 1 6.3230 -7.0270 10.3270 50 1 8.9969 -6.3662 10.9511 51 1 9.8347 -8.6016 14.7806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178535100.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:41 Heat of formation + Delta-G solvation = 52.996676 kcal Electronic energy + Delta-G solvation = -27493.479810 eV Core-core repulsion = 23464.712640 eV Total energy + Delta-G solvation = -4028.767170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.217 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.64238 -40.88376 -38.65758 -37.98445 -36.92769 -35.46391 -34.70489 -33.90486 -33.45283 -31.85051 -28.94712 -28.56208 -28.50059 -26.65193 -25.66464 -25.15360 -23.46390 -22.40723 -22.22858 -21.92345 -21.47970 -19.62387 -19.14061 -18.60328 -17.74826 -17.28800 -17.08122 -16.61287 -16.37635 -15.83969 -15.50313 -15.49112 -15.29624 -15.11812 -15.11075 -14.88090 -14.17388 -14.13623 -14.06237 -13.50920 -13.49249 -13.35387 -13.29944 -13.25452 -13.03375 -12.86935 -12.69119 -12.65689 -12.47307 -12.39397 -12.15095 -12.14083 -12.07319 -11.94255 -11.85279 -11.80450 -11.70463 -11.51912 -11.38718 -11.30629 -10.96634 -10.31712 -9.30374 -8.04075 -5.37843 -0.20474 0.20746 0.60113 1.37818 1.41715 1.49344 1.63680 1.82136 2.48237 2.75341 2.91789 3.27347 3.45888 3.53846 3.58009 3.61747 3.87797 3.97225 4.04494 4.21446 4.26117 4.27298 4.31169 4.38860 4.50199 4.56296 4.58093 4.61190 4.62275 4.70655 4.70940 4.77645 4.83264 4.98021 4.98109 4.99928 5.06932 5.08687 5.14167 5.14696 5.19901 5.21426 5.29815 5.39236 5.55760 5.58681 5.74575 6.15348 6.20624 6.77991 6.99718 7.07309 7.84249 8.03726 9.17642 Molecular weight = 338.22amu Principal moments of inertia in cm(-1) A = 0.041901 B = 0.001209 C = 0.001187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.077437 B =23144.544183 C =23589.701152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 C -0.158 4.158 4 C -0.158 4.158 5 N -0.109 5.109 6 N -0.058 5.058 7 N -0.266 5.266 8 C 0.110 3.890 9 C 0.616 3.384 10 O -0.545 6.545 11 N -0.690 5.690 12 C 0.120 3.880 13 C -0.122 4.122 14 C -0.111 4.111 15 C -0.108 4.108 16 C -0.120 4.120 17 C 0.149 3.851 18 N -0.763 5.763 19 C -0.242 4.242 20 H 0.054 0.946 21 C -0.065 4.065 22 N -0.985 5.985 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.251 1.251 27 N -0.259 5.259 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.128 0.872 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.022 0.978 49 H 0.021 0.979 50 H 0.366 0.634 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.247 22.776 -39.162 49.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.082 3.918 3 C -0.216 4.216 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.050 5.050 7 N -0.140 5.140 8 C -0.173 4.173 9 C 0.396 3.604 10 O -0.419 6.419 11 N -0.343 5.343 12 C -0.003 4.003 13 C -0.160 4.160 14 C -0.149 4.149 15 C -0.146 4.146 16 C -0.158 4.158 17 C 0.023 3.977 18 N -0.409 5.409 19 C -0.373 4.373 20 H 0.072 0.928 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.786 3.214 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.175 1.175 27 N -0.113 5.113 28 H 0.089 0.911 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.259 0.741 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.040 0.960 49 H 0.039 0.961 50 H 0.199 0.801 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.197 22.936 -39.435 49.891 hybrid contribution 1.219 -0.422 0.723 1.479 sum -18.978 22.514 -38.712 48.638 Atomic orbital electron populations 1.22184 0.87954 1.04807 1.05902 1.22202 0.98045 0.93353 0.78246 1.22312 1.02556 0.91069 1.05695 1.22312 1.02548 1.01178 0.95591 1.51317 1.00051 1.32865 1.18377 1.78827 1.21527 1.08998 0.95667 1.76096 0.99742 1.18121 1.20022 1.25267 0.94665 1.03280 0.94124 1.16192 0.84279 0.78704 0.81187 1.90845 1.26556 1.56474 1.68074 1.45696 1.12394 1.55205 1.20973 1.21613 0.85816 0.99611 0.93227 1.21737 0.98889 1.00883 0.94449 1.21440 0.97225 1.00508 0.95774 1.21436 0.96412 1.00509 0.96207 1.21698 0.99188 0.99773 0.95162 1.20876 0.88347 0.96014 0.92445 1.42799 1.04667 1.68554 1.24849 1.19099 0.93657 1.26900 0.97649 0.92777 1.25567 1.01999 1.00665 0.97373 1.69896 1.29479 1.45638 1.18511 0.85344 0.79414 0.77462 0.79196 1.20233 1.22001 1.17550 1.74962 1.04058 1.17108 1.15175 0.91103 0.85613 0.91092 0.91749 0.85400 0.91898 0.91894 0.85392 0.91758 0.74135 0.91020 0.90991 0.90002 0.90032 0.91368 0.91318 0.91392 0.91433 0.91912 0.91768 0.96006 0.96113 0.80060 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.32 7.90 71.98 0.57 0.25 16 2 C 0.16 1.01 1.30 3.60 0.00 1.02 16 3 C -0.16 -0.61 8.66 71.98 0.62 0.01 16 4 C -0.16 -0.61 8.66 71.98 0.62 0.01 16 5 N -0.11 -1.69 3.72 -152.26 -0.57 -2.25 16 6 N -0.06 -1.04 12.21 37.02 0.45 -0.59 16 7 N -0.27 -5.38 12.26 -52.36 -0.64 -6.02 16 8 C 0.11 2.40 8.14 137.15 1.12 3.51 16 9 C 0.62 13.77 7.84 86.83 0.68 14.45 16 10 O -0.55 -15.73 17.10 -3.82 -0.07 -15.79 16 11 N -0.69 -11.13 5.55 -465.80 -2.59 -13.71 16 12 C 0.12 1.77 5.67 86.38 0.49 2.26 16 13 C -0.12 -1.49 5.33 30.59 0.16 -1.33 16 14 C -0.11 -1.73 5.21 30.59 0.16 -1.57 16 15 C -0.11 -2.17 5.21 30.60 0.16 -2.02 16 16 C -0.12 -3.35 5.33 30.59 0.16 -3.19 16 17 C 0.15 5.76 6.26 86.38 0.54 6.30 16 18 N -0.76 -37.12 5.41 -343.47 -1.86 -38.97 16 19 C -0.24 -14.38 10.47 84.03 0.88 -13.50 16 20 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 21 C -0.06 -3.92 5.50 84.86 0.47 -3.45 16 22 N -0.98 -64.50 13.97 21.65 0.30 -64.20 16 23 Si 0.96 46.33 27.74 68.60 1.90 48.23 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 27 N -0.26 -5.37 11.85 -52.31 -0.62 -5.99 16 28 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 36 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.42 5.23 8.22 -92.71 -0.76 4.47 16 38 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.37 16.80 5.53 -92.71 -0.51 16.28 16 51 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 Total: -1.00 -81.12 423.12 2.54 -78.57 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.42 Total: 17.96 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: 6.64 Total: 2.76 kcal Atomic # 7 Polarization: -126.22 SS G_CDS: -5.52 Total: -131.74 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.07 Total: -15.79 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -81.12 2.54 -78.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178535100.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.570 kcal (2) G-P(sol) polarization free energy of solvation -81.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds