Wall clock time and date at job start Tue Mar 31 2020 21:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99902 * 2 1 4 4 C 1.52998 * 109.46856 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88692 * 125.01755 * 5 4 3 7 7 C 1.35371 * 107.22924 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50187 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.51803 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00207 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00345 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47336 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47280 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46967 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47280 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47336 * 179.97438 * 17 16 15 19 19 C 1.36938 * 120.00014 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99927 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99635 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00385 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99792 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47153 * 59.99530 * 23 21 19 25 25 H 1.48496 * 109.47322 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47248 * 299.99781 * 23 21 19 27 27 N 1.28468 * 124.88202 * 305.02338 * 5 4 3 28 28 H 1.08996 * 109.47408 * 60.00063 * 1 2 3 29 29 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47279 * 299.99940 * 1 2 3 31 31 H 1.08996 * 109.47578 * 59.99843 * 3 2 1 32 32 H 1.09005 * 109.47176 * 299.99619 * 3 2 1 33 33 H 1.08991 * 109.47644 * 59.99853 * 4 3 2 34 34 H 1.09004 * 109.47035 * 299.99209 * 4 3 2 35 35 H 1.07998 * 126.38339 * 0.02562 * 6 5 4 36 36 H 1.07999 * 127.24829 * 179.97438 * 7 6 5 37 37 H 0.96998 * 120.00006 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.47171 * 300.00083 * 12 11 9 39 39 H 1.09007 * 109.46888 * 60.00198 * 12 11 9 40 40 H 1.09010 * 109.47219 * 300.00345 * 13 12 11 41 41 H 1.08999 * 109.47020 * 60.00035 * 13 12 11 42 42 H 1.08996 * 109.47075 * 300.00122 * 14 13 12 43 43 H 1.08999 * 109.47190 * 59.99987 * 14 13 12 44 44 H 1.08996 * 109.47321 * 299.99969 * 15 14 13 45 45 H 1.08999 * 109.47178 * 59.99978 * 15 14 13 46 46 H 1.08996 * 109.47075 * 300.00120 * 16 15 14 47 47 H 1.08999 * 109.47190 * 59.99985 * 16 15 14 48 48 H 1.08996 * 109.47166 * 300.00066 * 17 16 15 49 49 H 1.09007 * 109.46863 * 60.00161 * 17 16 15 50 50 H 0.96998 * 119.99689 * 359.97438 * 18 17 16 51 51 H 0.96993 * 119.99824 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3355 4.2445 0.5689 8 6 4.5714 4.5259 -0.5883 9 6 4.5553 5.7951 -1.3437 10 8 5.2472 6.7269 -0.9816 11 7 3.7727 5.9206 -2.4338 12 6 3.7563 7.1796 -3.1827 13 6 2.7933 7.0571 -4.3652 14 6 2.7766 8.3718 -5.1478 15 6 1.8130 8.2494 -6.3299 16 6 1.7969 9.5638 -7.1128 17 6 0.8338 9.4413 -8.2954 18 7 0.8179 10.7001 -9.0446 19 6 0.0228 10.8276 -10.1523 20 1 -0.5921 10.0000 -10.4737 21 6 0.0082 12.0202 -10.8625 22 7 0.7580 13.0286 -10.4710 23 14 -1.0758 12.1939 -12.3739 24 1 -2.4957 11.9866 -11.9912 25 1 -0.9116 13.5538 -12.9472 26 1 -0.6824 11.1794 -13.3844 27 7 3.8773 3.4399 -0.8644 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6438 -0.8907 34 1 3.8574 0.6436 0.8892 35 1 5.4223 2.4147 1.7428 36 1 6.0202 4.9071 1.0773 37 1 3.2204 5.1774 -2.7225 38 1 3.4280 7.9873 -2.5285 39 1 4.7589 7.3958 -3.5520 40 1 3.1220 6.2494 -5.0194 41 1 1.7907 6.8407 -3.9964 42 1 2.4482 9.1796 -4.4939 43 1 3.7793 8.5878 -5.5166 44 1 2.1410 7.4415 -6.9839 45 1 0.8105 8.0336 -5.9607 46 1 1.4691 10.3720 -6.4591 47 1 2.7995 9.7791 -7.4821 48 1 1.1620 8.6332 -8.9490 49 1 -0.1690 9.2258 -7.9264 50 1 1.3699 11.4435 -8.7557 51 1 0.7480 13.8617 -10.9676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178993805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:51 Heat of formation + Delta-G solvation = -12.570586 kcal Electronic energy + Delta-G solvation = -27096.585633 eV Core-core repulsion = 23032.682502 eV Total energy + Delta-G solvation = -4063.903131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.17317 -39.66069 -38.66878 -36.78563 -35.36557 -34.56581 -33.89992 -31.96463 -31.21140 -30.32310 -29.70616 -27.34399 -26.76279 -24.99073 -23.89467 -22.75309 -22.03736 -21.92617 -21.16253 -20.61701 -20.09247 -18.43229 -17.50403 -16.99081 -16.92510 -16.67338 -16.32619 -16.14436 -16.01015 -15.42810 -15.04603 -14.65072 -14.51495 -14.30733 -14.12231 -13.82150 -13.57198 -13.43775 -13.31193 -12.92655 -12.69952 -12.67587 -12.36092 -12.30284 -12.05322 -11.67972 -11.41572 -11.29672 -11.16506 -10.87562 -10.70081 -10.68908 -10.49669 -10.46200 -10.31470 -10.21751 -9.94728 -9.79342 -9.60845 -9.58757 -9.28456 -8.81287 -6.85900 -5.71187 -2.99558 1.12530 1.64693 1.72083 2.85456 3.09112 3.14354 3.47393 3.51138 3.52750 3.78070 4.09671 4.20286 4.29372 4.43217 4.58128 4.62803 4.66805 4.68873 4.75698 4.81055 4.88024 4.96837 5.02723 5.05187 5.18836 5.28098 5.30115 5.43136 5.44981 5.59414 5.68293 5.74922 5.78293 5.90307 5.98744 6.01226 6.15579 6.17975 6.19059 6.31501 6.38506 6.38851 6.45464 6.52859 6.95655 6.99682 7.13081 7.44169 7.73991 7.93147 8.48246 9.58708 10.18689 10.53286 11.51889 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.001307 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.633690 B =21415.168634 C =23203.659824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.124 3.876 5 N -0.281 5.281 6 C -0.014 4.014 7 C -0.177 4.177 8 C -0.013 4.013 9 C 0.602 3.398 10 O -0.532 6.532 11 N -0.717 5.717 12 C 0.117 3.883 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.127 4.127 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 N -0.262 5.262 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.185 0.815 36 H 0.165 0.835 37 H 0.406 0.594 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.383 0.617 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.518 -29.448 29.155 41.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.003 3.997 5 N -0.071 5.071 6 C -0.156 4.156 7 C -0.205 4.205 8 C -0.173 4.173 9 C 0.386 3.614 10 O -0.406 6.406 11 N -0.369 5.369 12 C -0.006 4.006 13 C -0.169 4.169 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.165 4.165 17 C 0.024 3.976 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 N -0.098 5.098 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.202 0.798 36 H 0.182 0.818 37 H 0.241 0.759 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.034 0.966 49 H 0.034 0.966 50 H 0.217 0.783 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.176 -29.514 28.513 41.500 hybrid contribution -0.341 0.469 -0.288 0.648 sum 5.835 -29.045 28.225 40.918 Atomic orbital electron populations 1.22818 0.79528 1.03365 1.00606 1.87776 1.20902 1.26507 1.95639 1.22636 0.92017 0.85790 1.02387 1.21714 0.93191 0.78375 1.06393 1.45316 1.31179 1.11520 1.19079 1.22925 0.97711 0.96621 0.98337 1.21824 1.04416 0.95972 0.98248 1.21989 1.01749 0.93958 0.99635 1.16882 0.79727 0.84923 0.79824 1.90818 1.42300 1.39276 1.68207 1.45896 1.45434 1.17237 1.28310 1.21506 1.00670 0.85417 0.93010 1.21829 0.99313 0.99600 0.96124 1.21517 1.00612 0.96173 0.97101 1.21499 0.99060 0.98380 0.96198 1.21728 1.00498 0.96729 0.97497 1.20659 0.95664 0.90008 0.91230 1.42389 1.52821 1.11544 1.31157 1.19220 1.17636 0.97753 1.02507 0.91282 1.24747 1.00396 0.96283 0.99704 1.69653 1.43178 1.03848 1.41677 0.86253 0.80187 0.76720 0.82948 1.21307 1.21667 1.21297 1.73463 1.22808 0.97744 1.15823 0.93426 0.88968 0.93697 0.92424 0.91214 0.87738 0.86794 0.79816 0.81760 0.75904 0.91089 0.91078 0.91229 0.91267 0.91591 0.91568 0.92108 0.92122 0.92084 0.92077 0.96598 0.96621 0.78328 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.08 10.70 -35.23 -0.38 -2.45 16 3 C 0.05 0.22 6.04 37.16 0.22 0.44 16 4 C 0.12 0.43 6.77 -4.04 -0.03 0.40 16 5 N -0.28 -1.72 3.41 -61.33 -0.21 -1.93 16 6 C -0.01 -0.07 11.40 -17.17 -0.20 -0.27 16 7 C -0.18 -1.42 10.81 -39.36 -0.43 -1.85 16 8 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 9 C 0.60 7.03 7.83 -12.39 -0.10 6.93 16 10 O -0.53 -7.88 16.93 5.30 0.09 -7.79 16 11 N -0.72 -6.85 5.55 -61.29 -0.34 -7.19 16 12 C 0.12 1.12 5.67 -4.04 -0.02 1.09 16 13 C -0.13 -1.13 5.33 -26.73 -0.14 -1.27 16 14 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 15 C -0.11 -1.43 5.21 -26.73 -0.14 -1.57 16 16 C -0.13 -2.10 5.33 -26.73 -0.14 -2.24 16 17 C 0.15 3.20 6.26 -4.04 -0.03 3.18 16 18 N -0.74 -19.61 5.60 -59.91 -0.34 -19.95 16 19 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -29.07 13.06 55.49 0.72 -28.34 16 23 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 N -0.26 -2.25 11.36 33.42 0.38 -1.87 16 28 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 0.12 8.04 -51.93 -0.42 -0.30 16 35 H 0.18 0.26 8.06 -52.49 -0.42 -0.17 16 36 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.41 3.20 8.20 -40.82 -0.33 2.86 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 51 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 429.64 15.07 6.47 6.47 Total: -1.00 -36.27 429.64 -8.54 -44.80 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -9.06 Total: 4.06 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.86 Total: -3.71 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.22 Total: -59.27 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.29 Total: -10.24 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -36.27 -8.54 -44.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178993805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.234 kcal (2) G-P(sol) polarization free energy of solvation -36.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds