Wall clock time and date at job start Tue Mar 31 2020 21:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99902 * 2 1 4 4 C 1.52998 * 109.46856 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.88692 * 125.01755 * 5 4 3 7 7 C 1.35371 * 107.22924 * 180.02562 * 6 5 4 8 8 C 1.41496 * 105.50187 * 0.02562 * 7 6 5 9 9 C 1.47705 * 126.51803 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00207 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00345 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00304 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47336 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47280 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46967 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47280 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47336 * 179.97438 * 17 16 15 19 19 C 1.36938 * 120.00014 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99927 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99635 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00385 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99792 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47153 * 59.99530 * 23 21 19 25 25 H 1.48496 * 109.47322 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47248 * 299.99781 * 23 21 19 27 27 N 1.28468 * 124.88202 * 305.02338 * 5 4 3 28 28 H 1.08996 * 109.47408 * 60.00063 * 1 2 3 29 29 H 1.09000 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47279 * 299.99940 * 1 2 3 31 31 H 1.08996 * 109.47578 * 59.99843 * 3 2 1 32 32 H 1.09005 * 109.47176 * 299.99619 * 3 2 1 33 33 H 1.08991 * 109.47644 * 59.99853 * 4 3 2 34 34 H 1.09004 * 109.47035 * 299.99209 * 4 3 2 35 35 H 1.07998 * 126.38339 * 0.02562 * 6 5 4 36 36 H 1.07999 * 127.24829 * 179.97438 * 7 6 5 37 37 H 0.96998 * 120.00006 * 359.97438 * 11 9 8 38 38 H 1.08996 * 109.47171 * 300.00083 * 12 11 9 39 39 H 1.09007 * 109.46888 * 60.00198 * 12 11 9 40 40 H 1.09010 * 109.47219 * 300.00345 * 13 12 11 41 41 H 1.08999 * 109.47020 * 60.00035 * 13 12 11 42 42 H 1.08996 * 109.47075 * 300.00122 * 14 13 12 43 43 H 1.08999 * 109.47190 * 59.99987 * 14 13 12 44 44 H 1.08996 * 109.47321 * 299.99969 * 15 14 13 45 45 H 1.08999 * 109.47178 * 59.99978 * 15 14 13 46 46 H 1.08996 * 109.47075 * 300.00120 * 16 15 14 47 47 H 1.08999 * 109.47190 * 59.99985 * 16 15 14 48 48 H 1.08996 * 109.47166 * 300.00066 * 17 16 15 49 49 H 1.09007 * 109.46863 * 60.00161 * 17 16 15 50 50 H 0.96998 * 119.99689 * 359.97438 * 18 17 16 51 51 H 0.96993 * 119.99824 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0266 2.9701 0.9054 7 6 5.3355 4.2445 0.5689 8 6 4.5714 4.5259 -0.5883 9 6 4.5553 5.7951 -1.3437 10 8 5.2472 6.7269 -0.9816 11 7 3.7727 5.9206 -2.4338 12 6 3.7563 7.1796 -3.1827 13 6 2.7933 7.0571 -4.3652 14 6 2.7766 8.3718 -5.1478 15 6 1.8130 8.2494 -6.3299 16 6 1.7969 9.5638 -7.1128 17 6 0.8338 9.4413 -8.2954 18 7 0.8179 10.7001 -9.0446 19 6 0.0228 10.8276 -10.1523 20 1 -0.5921 10.0000 -10.4737 21 6 0.0082 12.0202 -10.8625 22 7 0.7580 13.0286 -10.4710 23 14 -1.0758 12.1939 -12.3739 24 1 -2.4957 11.9866 -11.9912 25 1 -0.9116 13.5538 -12.9472 26 1 -0.6824 11.1794 -13.3844 27 7 3.8773 3.4399 -0.8644 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6438 -0.8907 34 1 3.8574 0.6436 0.8892 35 1 5.4223 2.4147 1.7428 36 1 6.0202 4.9071 1.0773 37 1 3.2204 5.1774 -2.7225 38 1 3.4280 7.9873 -2.5285 39 1 4.7589 7.3958 -3.5520 40 1 3.1220 6.2494 -5.0194 41 1 1.7907 6.8407 -3.9964 42 1 2.4482 9.1796 -4.4939 43 1 3.7793 8.5878 -5.5166 44 1 2.1410 7.4415 -6.9839 45 1 0.8105 8.0336 -5.9607 46 1 1.4691 10.3720 -6.4591 47 1 2.7995 9.7791 -7.4821 48 1 1.1620 8.6332 -8.9490 49 1 -0.1690 9.2258 -7.9264 50 1 1.3699 11.4435 -8.7557 51 1 0.7480 13.8617 -10.9676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178993805.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:50 Heat of formation + Delta-G solvation = -38.169899 kcal Electronic energy + Delta-G solvation = -27097.695702 eV Core-core repulsion = 23032.682502 eV Total energy + Delta-G solvation = -4065.013200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.70020 -40.52326 -39.00199 -37.91565 -36.76407 -35.34718 -34.97901 -33.52448 -31.94888 -31.43456 -30.48403 -28.42411 -27.32359 -26.06910 -25.07026 -23.77212 -22.96474 -22.47108 -22.15539 -21.94158 -20.81613 -19.13613 -18.93145 -17.98508 -17.45233 -17.09756 -17.06042 -16.93846 -16.67795 -16.57890 -16.21212 -15.68699 -15.38190 -15.31839 -15.19942 -15.03864 -14.74567 -14.27119 -14.07887 -14.00868 -13.87504 -13.43303 -13.04277 -13.03672 -12.92386 -12.65137 -12.62418 -12.40864 -12.34453 -12.21646 -12.02313 -11.94877 -11.81803 -11.79675 -11.56256 -11.34339 -11.20429 -10.92608 -10.78717 -10.40557 -10.17397 -10.01240 -9.01651 -7.96157 -5.25975 0.45701 1.14480 1.30297 1.46439 1.50468 1.56801 2.12384 2.32529 2.55846 2.77492 3.35732 3.36949 3.71014 3.74232 3.81861 3.96082 4.00019 4.01213 4.13683 4.20879 4.24539 4.30184 4.34357 4.44129 4.47624 4.59724 4.61376 4.63155 4.65230 4.72299 4.74816 4.78345 4.84365 4.86215 4.96787 4.98773 5.06146 5.14563 5.28508 5.28851 5.33838 5.40887 5.47427 5.53749 5.56627 5.78155 6.00423 6.26262 6.38840 6.84178 7.11848 7.31643 8.08823 8.31956 9.27428 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.001307 C = 0.001206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.633690 B =21415.168634 C =23203.659824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.276 5.276 6 C 0.009 3.991 7 C -0.203 4.203 8 C -0.041 4.041 9 C 0.598 3.402 10 O -0.574 6.574 11 N -0.707 5.707 12 C 0.119 3.881 13 C -0.118 4.118 14 C -0.112 4.112 15 C -0.104 4.104 16 C -0.117 4.117 17 C 0.148 3.852 18 N -0.751 5.751 19 C -0.253 4.253 20 H 0.076 0.924 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.276 1.276 27 N -0.273 5.273 28 H 0.047 0.953 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.146 0.854 35 H 0.229 0.771 36 H 0.164 0.836 37 H 0.415 0.585 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.373 0.627 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.903 -32.155 29.970 44.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.066 5.066 6 C -0.134 4.134 7 C -0.231 4.231 8 C -0.200 4.200 9 C 0.383 3.617 10 O -0.452 6.452 11 N -0.358 5.358 12 C -0.004 4.004 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.142 4.142 16 C -0.155 4.155 17 C 0.022 3.978 18 N -0.394 5.394 19 C -0.385 4.385 20 H 0.094 0.906 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.806 3.194 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.202 1.202 27 N -0.110 5.110 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.164 0.836 35 H 0.245 0.755 36 H 0.182 0.818 37 H 0.252 0.748 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.204 0.796 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.524 -32.288 29.322 43.964 hybrid contribution -0.179 1.193 -0.488 1.301 sum 5.345 -31.095 28.834 42.742 Atomic orbital electron populations 1.22961 0.78761 1.04262 1.00919 1.87749 1.21850 1.26871 1.95680 1.22590 0.92718 0.85463 1.01807 1.21978 0.92423 0.77122 1.08280 1.45633 1.30769 1.11790 1.18418 1.23517 0.95942 0.95629 0.98279 1.22034 1.05163 0.97547 0.98323 1.21872 1.03554 0.93867 1.00755 1.17217 0.79215 0.85239 0.80013 1.90780 1.44124 1.40846 1.69436 1.45835 1.44885 1.17450 1.27674 1.21447 1.00477 0.85289 0.93191 1.21693 0.99602 0.98775 0.95470 1.21444 0.99906 0.97230 0.96447 1.21416 1.00211 0.96077 0.96478 1.21635 0.98766 0.98946 0.96103 1.20876 0.96957 0.87747 0.92254 1.42658 1.52358 1.13072 1.31287 1.19668 1.17655 0.98006 1.03184 0.90634 1.25648 1.02182 0.96049 1.03051 1.69822 1.44978 1.04237 1.43102 0.85144 0.78562 0.76505 0.79139 1.20237 1.21926 1.20238 1.73408 1.22951 0.97874 1.16780 0.93465 0.87858 0.93064 0.92340 0.92529 0.87261 0.83564 0.75457 0.81803 0.74836 0.91903 0.91946 0.90218 0.90181 0.91710 0.91725 0.91329 0.91299 0.92661 0.92679 0.96325 0.96327 0.79569 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -3.64 10.70 -148.98 -1.59 -5.23 16 3 C 0.05 0.38 6.04 71.98 0.43 0.81 16 4 C 0.12 0.52 6.77 86.38 0.58 1.10 16 5 N -0.28 -2.80 3.41 -347.95 -1.19 -3.99 16 6 C 0.01 0.07 11.40 83.54 0.95 1.02 16 7 C -0.20 -3.14 10.81 22.41 0.24 -2.90 16 8 C -0.04 -0.83 7.13 42.45 0.30 -0.52 16 9 C 0.60 14.42 7.83 86.75 0.68 15.09 16 10 O -0.57 -17.90 16.93 -3.96 -0.07 -17.97 16 11 N -0.71 -13.51 5.55 -466.10 -2.59 -16.10 16 12 C 0.12 2.25 5.67 86.38 0.49 2.75 16 13 C -0.12 -1.85 5.33 30.59 0.16 -1.68 16 14 C -0.11 -2.20 5.21 30.60 0.16 -2.04 16 15 C -0.10 -2.44 5.21 30.60 0.16 -2.28 16 16 C -0.12 -3.81 5.33 30.59 0.16 -3.64 16 17 C 0.15 6.16 6.26 86.38 0.54 6.71 16 18 N -0.75 -40.41 5.60 -343.45 -1.92 -42.33 16 19 C -0.25 -14.79 9.99 84.03 0.84 -13.95 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 22 N -0.97 -61.17 13.06 21.65 0.28 -60.89 16 23 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 27 N -0.27 -4.45 11.36 -48.18 -0.55 -4.99 16 28 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.05 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.55 8.08 -2.38 -0.02 0.53 16 33 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.15 -0.29 8.04 -2.38 -0.02 -0.31 16 35 H 0.23 -0.37 8.06 -2.91 -0.02 -0.40 16 36 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.42 6.31 8.20 -92.71 -0.76 5.55 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.02 0.77 8.14 -2.38 -0.02 0.76 16 50 H 0.37 21.21 7.67 -92.71 -0.71 20.50 16 51 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -79.34 429.64 1.27 -78.07 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.56 Total: 26.60 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 7.43 Total: -2.25 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -5.96 Total: -128.30 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -1.66 Total: -23.19 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -79.34 1.27 -78.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178993805.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.901 kcal (2) G-P(sol) polarization free energy of solvation -79.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds