Wall clock time and date at job start Tue Mar 31 2020 21:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00267 * 2 1 4 4 H 1.48505 * 109.47321 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47382 * 299.99740 * 3 2 1 6 6 H 1.48501 * 109.47266 * 59.99887 * 3 2 1 7 7 C 1.38811 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99777 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00377 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00177 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47099 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47129 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47129 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47079 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46748 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46768 * 179.97438 * 15 14 13 17 17 C 1.34775 * 119.99905 * 180.02562 * 16 15 14 18 18 O 1.21276 * 120.00004 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99885 * 180.02562 * 17 16 15 20 20 C 1.54206 * 105.66402 * 61.45368 * 19 17 16 21 21 C 1.55336 * 101.75353 * 126.80267 * 20 19 17 22 22 O 1.44952 * 102.94916 * 324.27627 * 21 20 19 23 23 C 1.45803 * 104.82180 * 44.46204 * 22 21 20 24 24 H 1.09000 * 108.54537 * 207.45404 * 23 22 21 25 25 C 1.51600 * 107.23812 * 89.24255 * 23 22 21 26 26 C 1.52207 * 112.89052 * 207.21612 * 25 23 22 27 27 C 1.53440 * 108.03782 * 58.80990 * 26 25 23 28 28 C 1.49428 * 105.64436 * 301.28872 * 19 17 16 29 29 H 0.96998 * 119.99311 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99568 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47155 * 60.00423 * 10 9 7 32 32 H 1.09005 * 109.47059 * 299.99982 * 10 9 7 33 33 H 1.09001 * 109.46847 * 60.00142 * 11 10 9 34 34 H 1.09000 * 109.47174 * 300.00333 * 11 10 9 35 35 H 1.09004 * 109.46859 * 59.99909 * 12 11 10 36 36 H 1.08993 * 109.47128 * 300.00383 * 12 11 10 37 37 H 1.08991 * 109.46892 * 59.99729 * 13 12 11 38 38 H 1.09005 * 109.47075 * 300.00062 * 13 12 11 39 39 H 1.09004 * 109.47179 * 59.99743 * 14 13 12 40 40 H 1.08999 * 109.46537 * 299.99869 * 14 13 12 41 41 H 1.09001 * 109.46883 * 60.00143 * 15 14 13 42 42 H 1.08988 * 109.47276 * 299.99737 * 15 14 13 43 43 H 0.97002 * 120.00095 * 359.97438 * 16 15 14 44 44 H 1.08999 * 110.96772 * 8.68027 * 20 19 17 45 45 H 1.08997 * 110.96723 * 244.91897 * 20 19 17 46 46 H 1.09002 * 110.75128 * 82.69355 * 21 20 19 47 47 H 1.08999 * 110.75127 * 205.86221 * 21 20 19 48 48 H 1.09002 * 108.79968 * 328.09370 * 25 23 22 49 49 H 1.09001 * 108.80111 * 86.33460 * 25 23 22 50 50 H 1.09003 * 109.74691 * 178.44540 * 26 25 23 51 51 H 1.08999 * 109.74654 * 299.17674 * 26 25 23 52 52 H 1.09005 * 109.83572 * 51.11793 * 27 26 25 53 53 H 1.09001 * 109.83633 * 172.00622 * 27 26 25 54 54 H 1.09007 * 108.71066 * 329.56444 * 28 19 17 55 55 H 1.09003 * 108.71148 * 87.57786 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.0637 -4.8198 -0.0001 12 6 1.8286 -6.1448 -0.0008 13 6 0.8343 -7.3077 -0.0008 14 6 1.5993 -8.6327 -0.0008 15 6 0.6049 -9.7956 -0.0001 16 7 1.3374 -11.0643 -0.0007 17 6 0.6635 -12.2315 -0.0008 18 8 -0.5493 -12.2314 0.0000 19 6 1.4169 -13.5366 -0.0009 20 6 2.2395 -13.5425 1.3034 21 6 1.8187 -14.8970 1.9368 22 8 0.4211 -15.0076 1.5684 23 6 0.3741 -14.6215 0.1632 24 1 -0.6132 -14.2124 -0.0510 25 6 0.5894 -15.8791 -0.6556 26 6 1.2092 -15.6000 -2.0174 27 6 2.5558 -14.8999 -1.7920 28 6 2.2657 -13.5119 -1.2305 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 2.6846 -3.7147 0.8906 32 1 2.6847 -3.7146 -0.8895 33 1 0.4374 -4.7618 -0.8904 34 1 0.4366 -4.7622 0.8896 35 1 2.4552 -6.2030 0.8893 36 1 2.4553 -6.2021 -0.8906 37 1 0.2074 -7.2496 -0.8904 38 1 0.2079 -7.2502 0.8895 39 1 2.2260 -8.6905 0.8892 40 1 2.2259 -8.6904 -0.8908 41 1 -0.0220 -9.7380 -0.8899 42 1 -0.0213 -9.7376 0.8900 43 1 2.3074 -11.0644 -0.0018 44 1 1.9588 -12.7076 1.9454 45 1 3.3084 -13.5267 1.0905 46 1 2.3962 -15.7181 1.5118 47 1 1.9313 -14.8681 3.0206 48 1 1.2456 -16.5507 -0.1020 49 1 -0.3718 -16.3721 -0.8015 50 1 1.3663 -16.5381 -2.5498 51 1 0.5501 -14.9530 -2.5964 52 1 3.1541 -15.4690 -1.0804 53 1 3.0904 -14.8129 -2.7380 54 1 1.7566 -12.9248 -1.9950 55 1 3.2119 -13.0260 -0.9925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179000463.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:15 Heat of formation + Delta-G solvation = -127.288135 kcal Electronic energy + Delta-G solvation = -29137.431030 eV Core-core repulsion = 25172.093717 eV Total energy + Delta-G solvation = -3965.337313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.55941 -39.74561 -37.91486 -36.92745 -36.78735 -35.45185 -34.21455 -33.25595 -31.40972 -30.79626 -29.93720 -28.27667 -25.91978 -24.75572 -24.09415 -23.31831 -23.12714 -22.22611 -22.02060 -21.33530 -19.67323 -19.13460 -18.70529 -17.27402 -17.08580 -16.97722 -16.69018 -16.62104 -16.17589 -15.92961 -15.47717 -15.40756 -15.33202 -15.17632 -15.06526 -14.47094 -14.14478 -14.00748 -13.90966 -13.60856 -13.43244 -13.19889 -13.05064 -12.97321 -12.89386 -12.68657 -12.61869 -12.51759 -12.40662 -12.14896 -12.10106 -12.00576 -11.82939 -11.80718 -11.69801 -11.45350 -11.44054 -11.35738 -11.09193 -10.95301 -10.64802 -10.59744 -10.16091 -9.02287 -7.97275 -5.26918 1.46408 1.47951 1.54507 1.58242 2.04435 2.55042 2.87311 3.26312 3.35647 3.36440 3.70331 3.72829 3.92049 3.98805 4.00567 4.01068 4.05664 4.19612 4.21776 4.23255 4.27412 4.32160 4.34702 4.36941 4.53091 4.57376 4.62227 4.76814 4.77875 4.80518 4.84050 4.87709 4.91257 4.92965 4.96423 4.96448 4.97735 5.05709 5.12295 5.14666 5.14853 5.23671 5.27581 5.33517 5.34221 5.40352 5.47129 5.48463 5.52725 5.55644 5.80069 6.25610 6.46035 7.15371 7.30867 8.08073 8.30684 9.26819 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.032163 B = 0.001338 C = 0.001331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.350107 B =20919.864230 C =21031.557668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.077 0.923 9 N -0.752 5.752 10 C 0.148 3.852 11 C -0.118 4.118 12 C -0.102 4.102 13 C -0.114 4.114 14 C -0.115 4.115 15 C 0.119 3.881 16 N -0.712 5.712 17 C 0.506 3.494 18 O -0.585 6.585 19 C -0.079 4.079 20 C -0.141 4.141 21 C 0.034 3.966 22 O -0.404 6.404 23 C 0.082 3.918 24 H 0.084 0.916 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.103 4.103 29 H 0.252 0.748 30 H 0.372 0.628 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.417 0.583 44 H 0.073 0.927 45 H 0.127 0.873 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.053 0.947 52 H 0.081 0.919 53 H 0.086 0.914 54 H 0.057 0.943 55 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.828 -39.130 -1.673 40.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.381 4.381 8 H 0.095 0.905 9 N -0.394 5.394 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.140 4.140 13 C -0.152 4.152 14 C -0.153 4.153 15 C -0.005 4.005 16 N -0.364 5.364 17 C 0.294 3.706 18 O -0.465 6.465 19 C -0.083 4.083 20 C -0.179 4.179 21 C -0.042 4.042 22 O -0.324 6.324 23 C 0.025 3.975 24 H 0.102 0.898 25 C -0.166 4.166 26 C -0.158 4.158 27 C -0.150 4.150 28 C -0.141 4.141 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.255 0.745 44 H 0.092 0.908 45 H 0.145 0.855 46 H 0.102 0.898 47 H 0.120 0.880 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.072 0.928 52 H 0.099 0.901 53 H 0.105 0.895 54 H 0.076 0.924 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.957 -39.064 -1.522 40.342 hybrid contribution -0.397 1.444 0.057 1.498 sum 9.560 -37.621 -1.465 38.844 Atomic orbital electron populations 1.69840 1.06765 1.26102 1.59549 1.25652 0.96479 1.01375 1.03577 0.85008 0.78233 0.79368 0.76750 1.18835 1.21870 1.21900 1.19744 0.91626 0.85494 1.41279 0.90507 1.42686 1.05694 1.01595 1.89458 1.20883 0.94408 0.85005 0.97518 1.21646 0.98114 0.94496 1.01300 1.21408 0.97871 0.91926 1.02831 1.21455 0.98124 0.93375 1.02282 1.21681 0.97636 0.91809 1.04178 1.21346 0.95222 0.82660 1.01245 1.45859 1.11138 1.04834 1.74538 1.21362 0.87814 0.87128 0.74346 1.90667 1.16443 1.87727 1.51705 1.20814 0.96252 0.91464 0.99726 1.23420 1.02144 0.98987 0.93344 1.23927 0.82062 0.96658 1.01583 1.89578 1.27089 1.89436 1.26266 1.22327 0.99466 0.93586 0.82131 0.89802 1.21506 1.01993 0.96304 0.96814 1.21495 0.97176 1.01635 0.95494 1.21545 0.96731 0.94486 1.02214 1.20824 0.99657 0.99920 0.93663 0.93955 0.79626 0.96222 0.96189 0.92815 0.92872 0.91167 0.91070 0.92058 0.92197 0.89861 0.89674 0.92715 0.93018 0.74544 0.90820 0.85482 0.89752 0.88017 0.90428 0.92226 0.89881 0.92834 0.90055 0.89527 0.92377 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 N -0.75 -39.90 5.60 -343.43 -1.92 -41.83 16 10 C 0.15 6.02 6.26 86.38 0.54 6.56 16 11 C -0.12 -3.74 5.33 30.59 0.16 -3.57 16 12 C -0.10 -2.25 5.21 30.59 0.16 -2.09 16 13 C -0.11 -2.09 5.21 30.60 0.16 -1.93 16 14 C -0.12 -1.47 5.33 30.59 0.16 -1.31 16 15 C 0.12 1.97 5.67 86.38 0.49 2.46 16 16 N -0.71 -9.53 5.13 -463.08 -2.37 -11.90 16 17 C 0.51 9.68 5.43 87.66 0.48 10.16 16 18 O -0.59 -17.40 14.83 -3.02 -0.04 -17.45 16 19 C -0.08 -0.98 0.76 -54.19 -0.04 -1.02 16 20 C -0.14 -1.15 6.01 31.81 0.19 -0.96 16 21 C 0.03 0.36 7.42 72.78 0.54 0.90 16 22 O -0.40 -8.22 11.26 -148.98 -1.68 -9.90 16 23 C 0.08 1.48 3.10 29.60 0.09 1.57 16 24 H 0.08 2.16 6.01 -2.39 -0.01 2.14 16 25 C -0.13 -1.63 5.36 29.87 0.16 -1.47 16 26 C -0.12 -1.05 5.97 30.48 0.18 -0.87 16 27 C -0.11 -0.54 6.06 30.58 0.19 -0.36 16 28 C -0.10 -0.69 4.31 29.29 0.13 -0.56 16 29 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.37 20.99 7.67 -92.70 -0.71 20.28 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.42 2.63 7.97 -92.71 -0.74 1.89 16 44 H 0.07 0.78 7.45 -2.39 -0.02 0.76 16 45 H 0.13 0.11 7.55 -2.39 -0.02 0.09 16 46 H 0.08 0.55 7.42 -2.39 -0.02 0.53 16 47 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 0.82 7.07 -2.39 -0.02 0.81 16 49 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.05 0.61 8.10 -2.39 -0.02 0.59 16 52 H 0.08 0.22 8.11 -2.38 -0.02 0.20 16 53 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 54 H 0.06 0.56 7.57 -2.38 -0.02 0.54 16 55 H 0.10 0.11 7.50 -2.39 -0.02 0.09 16 Total: -1.00 -78.21 422.51 0.59 -77.62 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.59 Total: 25.61 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.89 Total: -10.24 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -4.02 Total: -114.39 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.72 Total: -27.34 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -78.21 0.59 -77.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179000463.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.669 kcal (2) G-P(sol) polarization free energy of solvation -78.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds