Wall clock time and date at job start Tue Mar 31 2020 20:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 110.99627 * 2 1 4 4 C 1.46903 * 110.99975 * 123.94933 * 2 1 3 5 5 C 1.52998 * 109.46894 * 66.04772 * 4 2 1 6 6 C 1.50696 * 109.47376 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99867 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00518 * 180.02562 * 6 5 4 9 9 C 1.46729 * 125.23775 * 0.02562 * 8 6 5 10 10 C 1.54040 * 106.52909 * 160.79147 * 9 8 6 11 11 C 1.53879 * 103.86523 * 28.03341 * 10 9 8 12 12 H 1.09000 * 111.75330 * 95.30874 * 11 10 9 13 13 C 1.53567 * 110.01594 * 220.92486 * 11 10 9 14 14 N 1.47760 * 107.10398 * 117.81059 * 13 11 10 15 15 C 1.46895 * 111.26626 * 212.00677 * 14 13 11 16 16 C 1.50699 * 109.47052 * 301.08128 * 15 14 13 17 17 O 1.21292 * 120.00190 * 354.01911 * 16 15 14 18 18 N 1.34779 * 120.00081 * 174.02434 * 16 15 14 19 19 C 1.37095 * 120.00257 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99597 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00146 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99574 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47037 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47125 * 119.99819 * 23 21 19 26 26 H 1.48499 * 109.47612 * 240.00027 * 23 21 19 27 27 C 1.48335 * 105.77343 * 332.64161 * 14 13 11 28 28 C 1.46773 * 125.24315 * 179.72344 * 8 6 5 29 29 H 1.09000 * 112.20638 * 58.45617 * 28 8 6 30 30 H 1.09000 * 109.47454 * 296.04990 * 1 2 3 31 31 H 1.08997 * 109.47091 * 56.04865 * 1 2 3 32 32 H 1.08996 * 109.46797 * 176.04405 * 1 2 3 33 33 H 1.09004 * 109.46600 * 183.95102 * 3 2 1 34 34 H 1.08997 * 109.46929 * 303.94864 * 3 2 1 35 35 H 1.09000 * 109.47018 * 63.95821 * 3 2 1 36 36 H 1.08996 * 109.47398 * 306.05078 * 4 2 1 37 37 H 1.09001 * 109.47396 * 186.04867 * 4 2 1 38 38 H 1.09001 * 109.47176 * 300.00229 * 5 4 2 39 39 H 1.09002 * 109.46778 * 60.00397 * 5 4 2 40 40 H 1.08997 * 110.04390 * 280.05752 * 9 8 6 41 41 H 1.09002 * 110.04323 * 41.51761 * 9 8 6 42 42 H 1.09000 * 110.54690 * 146.63004 * 10 9 8 43 43 H 1.09004 * 110.54540 * 269.29250 * 10 9 8 44 44 H 1.09002 * 109.97169 * 237.69669 * 13 11 10 45 45 H 1.08994 * 109.96992 * 358.97007 * 13 11 10 46 46 H 1.09006 * 109.46984 * 61.07863 * 15 14 13 47 47 H 1.08996 * 109.47126 * 181.07906 * 15 14 13 48 48 H 0.97001 * 119.99773 * 359.97438 * 18 16 15 49 49 H 0.97004 * 119.99693 * 180.02562 * 22 21 19 50 50 H 1.08995 * 110.53100 * 279.63628 * 27 14 13 51 51 H 1.09002 * 110.65043 * 156.93603 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6315 -2.2425 0.9705 6 6 2.1720 -3.0284 2.1371 7 8 2.7874 -2.4630 3.0162 8 7 1.9717 -4.3595 2.2039 9 6 1.2470 -5.1576 1.2084 10 6 1.6779 -6.6210 1.4219 11 6 2.0426 -6.6838 2.9155 12 1 1.2083 -7.0389 3.5205 13 6 3.3098 -7.5288 3.1121 14 7 4.3395 -6.6400 3.6891 15 6 5.6857 -7.0257 3.2453 16 6 5.9624 -8.4483 3.6586 17 8 5.1677 -9.0428 4.3558 18 7 7.0931 -9.0598 3.2536 19 6 7.3452 -10.3538 3.6300 20 1 6.6379 -10.8829 4.2514 21 6 8.5107 -10.9845 3.2119 22 7 9.3710 -10.3407 2.4554 23 14 8.8545 -12.7473 3.7254 24 1 7.7381 -13.2436 4.5695 25 1 8.9770 -13.6002 2.5159 26 1 10.1213 -12.7997 4.4984 27 6 3.9982 -5.2730 3.2253 28 6 2.4501 -5.2351 3.2803 29 1 2.0704 -4.9332 4.2564 30 1 -0.3634 0.4513 0.9232 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0828 1.3433 -0.0708 34 1 1.5898 1.9163 -0.8525 35 1 1.7044 1.8724 0.9233 36 1 1.5611 -0.3872 2.0628 37 1 3.0797 -0.6610 1.1758 38 1 0.5472 -2.3474 0.9324 39 1 2.0659 -2.6213 0.0453 40 1 0.1723 -5.0585 1.3607 41 1 1.5138 -4.8323 0.2028 42 1 0.8535 -7.2987 1.2005 43 1 2.5438 -6.8588 0.8040 44 1 3.1031 -8.3579 3.7889 45 1 3.6561 -7.9094 2.1513 46 1 5.7477 -6.9440 2.1601 47 1 6.4221 -6.3648 3.7022 48 1 7.7285 -8.5844 2.6957 49 1 10.1844 -10.7811 2.1632 50 1 4.3484 -5.1169 2.2050 51 1 4.4228 -4.5233 3.8930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189035383.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:15 Heat of formation + Delta-G solvation = -47.270109 kcal Electronic energy + Delta-G solvation = -29848.061577 eV Core-core repulsion = 25782.653762 eV Total energy + Delta-G solvation = -4065.407815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91350 -39.12635 -38.07908 -37.46599 -35.69891 -33.86009 -32.41361 -31.61503 -31.23910 -30.11193 -27.99596 -27.64471 -26.63067 -25.34742 -24.24841 -23.15803 -21.63727 -21.16938 -20.17175 -19.41076 -18.93568 -17.81616 -17.60803 -16.52886 -16.12672 -15.98612 -15.80217 -15.28010 -15.05459 -14.98897 -14.65915 -14.47557 -14.33491 -13.91842 -13.77674 -13.49510 -13.15888 -13.12125 -12.81813 -12.71429 -12.60549 -12.25191 -12.15843 -12.06809 -11.98353 -11.89956 -11.78727 -11.49743 -11.30734 -11.23580 -11.04698 -10.92807 -10.79825 -10.67547 -10.34148 -10.22373 -10.00055 -9.49785 -8.86712 -8.79492 -8.42568 -7.99078 -7.90067 -6.41409 -3.82151 2.44171 2.67751 3.16339 3.26931 3.34063 3.56219 3.91129 4.06895 4.11796 4.25791 4.40441 4.48794 4.56629 4.63786 4.74711 4.78659 4.87229 4.97215 5.06919 5.08273 5.11781 5.12888 5.19840 5.23745 5.25717 5.30733 5.44423 5.47286 5.48262 5.50351 5.55254 5.62927 5.69413 5.73425 5.87104 5.87852 5.97809 6.03793 6.07832 6.27485 6.28945 6.51063 6.56739 6.58218 7.19345 7.23067 7.32939 7.55673 7.97883 8.06664 8.62002 9.18393 9.54747 10.06321 10.76440 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.002017 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.867355 B =13875.414496 C =14407.513589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.550 5.550 3 C 0.025 3.975 4 C 0.069 3.931 5 C -0.132 4.132 6 C 0.528 3.472 7 O -0.536 6.536 8 N -0.613 5.613 9 C 0.101 3.899 10 C -0.128 4.128 11 C -0.106 4.106 12 H 0.097 0.903 13 C 0.055 3.945 14 N -0.493 5.493 15 C 0.039 3.961 16 C 0.443 3.557 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.033 3.967 28 C 0.140 3.860 29 H 0.097 0.903 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.043 0.957 46 H 0.046 0.954 47 H 0.091 0.909 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.043 0.957 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.338 18.191 -8.525 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.059 4.059 5 C -0.173 4.173 6 C 0.317 3.683 7 O -0.413 6.413 8 N -0.348 5.348 9 C -0.022 4.022 10 C -0.166 4.166 11 C -0.126 4.126 12 H 0.115 0.885 13 C -0.073 4.073 14 N -0.217 5.217 15 C -0.092 4.092 16 C 0.229 3.771 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.096 4.096 28 C 0.037 3.963 29 H 0.115 0.885 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.120 0.880 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.061 0.939 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.175 17.851 -7.535 26.566 hybrid contribution 0.481 -0.189 -0.432 0.674 sum -17.694 17.661 -7.968 26.239 Atomic orbital electron populations 1.22465 0.87522 1.02350 1.00614 1.61969 1.07992 1.14175 1.43240 1.22372 1.01032 0.88370 1.00540 1.21846 1.01263 0.91454 0.91336 1.21612 1.02550 0.95420 0.97674 1.20299 0.79790 0.80588 0.87671 1.90731 1.41147 1.68794 1.40607 1.48412 1.55612 1.06563 1.24170 1.22061 0.96367 0.91274 0.92470 1.22580 1.02631 0.95171 0.96230 1.22688 0.99613 0.94153 0.96110 0.88475 1.22832 0.88927 0.96249 0.99246 1.64332 1.01213 1.00798 1.55400 1.22066 0.91698 0.97267 0.98196 1.19704 0.84100 0.87629 0.85700 1.90499 1.47770 1.66642 1.41325 1.41873 1.18619 1.13501 1.46108 1.19747 1.04977 0.88402 1.29600 0.87838 1.25270 0.95676 1.00308 0.96779 1.69625 1.11184 1.37913 1.35583 0.85799 0.78454 0.81776 0.78304 1.19218 1.20809 1.20747 1.23516 0.94521 0.92332 0.99259 1.22368 0.94067 0.88739 0.91158 0.88483 0.95519 0.91303 0.91185 0.91107 0.91259 0.95496 0.93819 0.89770 0.89025 0.88068 0.91380 0.90633 0.89513 0.90404 0.88035 0.93858 0.93572 0.89074 0.77500 0.91935 0.93875 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.32 60.07 0.56 0.67 16 2 N -0.55 -4.26 5.02 -251.25 -1.26 -5.53 16 3 C 0.03 0.17 9.57 60.07 0.57 0.74 16 4 C 0.07 0.61 4.25 -3.82 -0.02 0.60 16 5 C -0.13 -1.07 4.64 -27.89 -0.13 -1.20 16 6 C 0.53 6.07 7.62 -10.99 -0.08 5.98 16 7 O -0.54 -8.16 15.96 5.55 0.09 -8.07 16 8 N -0.61 -6.54 2.92 -162.82 -0.48 -7.02 16 9 C 0.10 0.77 6.59 -3.37 -0.02 0.75 16 10 C -0.13 -1.13 6.48 -25.73 -0.17 -1.29 16 11 C -0.11 -1.23 3.87 -88.89 -0.34 -1.57 16 12 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 13 C 0.06 0.88 5.03 -3.06 -0.02 0.86 16 14 N -0.49 -8.57 5.11 -232.46 -1.19 -9.76 16 15 C 0.04 0.74 5.31 -4.98 -0.03 0.71 16 16 C 0.44 10.54 7.41 -10.98 -0.08 10.46 16 17 O -0.58 -15.47 14.06 5.55 0.08 -15.39 16 18 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.03 0.48 5.61 -2.00 -0.01 0.47 16 28 C 0.14 1.77 3.89 -65.78 -0.26 1.52 16 29 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.37 6.47 -51.93 -0.34 0.03 16 33 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 35 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.08 0.84 8.02 -51.93 -0.42 0.43 16 38 H 0.09 0.58 6.55 -51.93 -0.34 0.24 16 39 H 0.10 0.74 7.85 -51.93 -0.41 0.33 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.47 7.57 -51.93 -0.39 0.07 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.76 7.34 -51.93 -0.38 0.38 16 44 H 0.10 1.89 6.93 -51.93 -0.36 1.53 16 45 H 0.04 0.71 6.82 -51.93 -0.35 0.35 16 46 H 0.05 0.79 7.99 -51.93 -0.41 0.38 16 47 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 48 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 49 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 50 H 0.04 0.64 7.84 -51.93 -0.41 0.23 16 51 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 401.37 15.07 6.05 6.05 Total: -1.00 -32.97 401.37 -10.04 -43.00 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.71 Total: 8.32 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -0.26 Total: 10.72 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -2.26 Total: -60.67 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.17 Total: -23.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.97 -10.04 -43.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189035383.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.267 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds