Wall clock time and date at job start Tue Mar 31 2020 20:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 110.99627 * 2 1 4 4 C 1.46903 * 110.99975 * 123.94933 * 2 1 3 5 5 C 1.52998 * 109.46894 * 66.04772 * 4 2 1 6 6 C 1.50696 * 109.47376 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99867 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00518 * 180.02562 * 6 5 4 9 9 C 1.46729 * 125.23775 * 0.02562 * 8 6 5 10 10 C 1.54040 * 106.52909 * 160.79147 * 9 8 6 11 11 C 1.53879 * 103.86523 * 28.03341 * 10 9 8 12 12 H 1.09000 * 111.75330 * 95.30874 * 11 10 9 13 13 C 1.53567 * 110.01594 * 220.92486 * 11 10 9 14 14 N 1.47760 * 107.10398 * 117.81059 * 13 11 10 15 15 C 1.46895 * 111.26626 * 212.00677 * 14 13 11 16 16 C 1.50699 * 109.47052 * 301.08128 * 15 14 13 17 17 O 1.21292 * 120.00190 * 354.01911 * 16 15 14 18 18 N 1.34779 * 120.00081 * 174.02434 * 16 15 14 19 19 C 1.37095 * 120.00257 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99597 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00146 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99574 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47037 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47125 * 119.99819 * 23 21 19 26 26 H 1.48499 * 109.47612 * 240.00027 * 23 21 19 27 27 C 1.48335 * 105.77343 * 332.64161 * 14 13 11 28 28 C 1.46773 * 125.24315 * 179.72344 * 8 6 5 29 29 H 1.09000 * 112.20638 * 58.45617 * 28 8 6 30 30 H 1.09000 * 109.47454 * 296.04990 * 1 2 3 31 31 H 1.08997 * 109.47091 * 56.04865 * 1 2 3 32 32 H 1.08996 * 109.46797 * 176.04405 * 1 2 3 33 33 H 1.09004 * 109.46600 * 183.95102 * 3 2 1 34 34 H 1.08997 * 109.46929 * 303.94864 * 3 2 1 35 35 H 1.09000 * 109.47018 * 63.95821 * 3 2 1 36 36 H 1.08996 * 109.47398 * 306.05078 * 4 2 1 37 37 H 1.09001 * 109.47396 * 186.04867 * 4 2 1 38 38 H 1.09001 * 109.47176 * 300.00229 * 5 4 2 39 39 H 1.09002 * 109.46778 * 60.00397 * 5 4 2 40 40 H 1.08997 * 110.04390 * 280.05752 * 9 8 6 41 41 H 1.09002 * 110.04323 * 41.51761 * 9 8 6 42 42 H 1.09000 * 110.54690 * 146.63004 * 10 9 8 43 43 H 1.09004 * 110.54540 * 269.29250 * 10 9 8 44 44 H 1.09002 * 109.97169 * 237.69669 * 13 11 10 45 45 H 1.08994 * 109.96992 * 358.97007 * 13 11 10 46 46 H 1.09006 * 109.46984 * 61.07863 * 15 14 13 47 47 H 1.08996 * 109.47126 * 181.07906 * 15 14 13 48 48 H 0.97001 * 119.99773 * 359.97438 * 18 16 15 49 49 H 0.97004 * 119.99693 * 180.02562 * 22 21 19 50 50 H 1.08995 * 110.53100 * 279.63628 * 27 14 13 51 51 H 1.09002 * 110.65043 * 156.93603 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1377 5 6 1.6315 -2.2425 0.9705 6 6 2.1720 -3.0284 2.1371 7 8 2.7874 -2.4630 3.0162 8 7 1.9717 -4.3595 2.2039 9 6 1.2470 -5.1576 1.2084 10 6 1.6779 -6.6210 1.4219 11 6 2.0426 -6.6838 2.9155 12 1 1.2083 -7.0389 3.5205 13 6 3.3098 -7.5288 3.1121 14 7 4.3395 -6.6400 3.6891 15 6 5.6857 -7.0257 3.2453 16 6 5.9624 -8.4483 3.6586 17 8 5.1677 -9.0428 4.3558 18 7 7.0931 -9.0598 3.2536 19 6 7.3452 -10.3538 3.6300 20 1 6.6379 -10.8829 4.2514 21 6 8.5107 -10.9845 3.2119 22 7 9.3710 -10.3407 2.4554 23 14 8.8545 -12.7473 3.7254 24 1 7.7381 -13.2436 4.5695 25 1 8.9770 -13.6002 2.5159 26 1 10.1213 -12.7997 4.4984 27 6 3.9982 -5.2730 3.2253 28 6 2.4501 -5.2351 3.2803 29 1 2.0704 -4.9332 4.2564 30 1 -0.3634 0.4513 0.9232 31 1 -0.3633 0.5739 -0.8524 32 1 -0.3633 -1.0252 -0.0709 33 1 3.0828 1.3433 -0.0708 34 1 1.5898 1.9163 -0.8525 35 1 1.7044 1.8724 0.9233 36 1 1.5611 -0.3872 2.0628 37 1 3.0797 -0.6610 1.1758 38 1 0.5472 -2.3474 0.9324 39 1 2.0659 -2.6213 0.0453 40 1 0.1723 -5.0585 1.3607 41 1 1.5138 -4.8323 0.2028 42 1 0.8535 -7.2987 1.2005 43 1 2.5438 -6.8588 0.8040 44 1 3.1031 -8.3579 3.7889 45 1 3.6561 -7.9094 2.1513 46 1 5.7477 -6.9440 2.1601 47 1 6.4221 -6.3648 3.7022 48 1 7.7285 -8.5844 2.6957 49 1 10.1844 -10.7811 2.1632 50 1 4.3484 -5.1169 2.2050 51 1 4.4228 -4.5233 3.8930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189035383.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:13 Heat of formation + Delta-G solvation = -72.822016 kcal Electronic energy + Delta-G solvation = -29849.169590 eV Core-core repulsion = 25782.653762 eV Total energy + Delta-G solvation = -4066.515829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.89848 -40.42312 -39.52369 -38.20171 -36.91617 -35.86495 -33.48578 -33.18713 -32.35832 -31.23767 -28.72003 -28.46886 -28.14249 -26.31765 -25.82705 -23.93345 -22.62076 -22.17251 -21.17625 -20.92628 -20.13079 -19.78407 -18.44884 -17.71897 -17.41612 -16.91933 -16.79600 -16.55165 -16.32405 -16.03105 -15.86483 -15.67770 -15.41659 -15.19722 -14.88003 -14.85729 -14.32921 -14.08294 -13.84767 -13.76621 -13.56731 -13.31125 -13.27654 -13.18864 -13.00122 -12.91946 -12.77417 -12.60303 -12.46963 -12.41417 -12.41248 -12.11404 -11.96637 -11.92817 -11.84002 -11.59921 -11.48937 -10.93394 -10.32744 -10.03091 -9.75436 -9.37519 -9.34439 -8.47961 -5.96870 1.35787 1.41306 1.55650 1.58340 1.84279 2.01079 2.27754 2.79746 2.97914 3.14623 3.18829 3.44707 3.50626 3.64016 3.80946 3.92846 4.07704 4.10840 4.11057 4.23365 4.25016 4.29863 4.34831 4.39673 4.47815 4.49309 4.55506 4.57928 4.64256 4.67103 4.70814 4.76826 4.85024 4.90834 4.94987 4.97190 5.01397 5.07246 5.08666 5.12639 5.24304 5.35657 5.40087 5.79304 5.89736 5.98107 6.03511 6.05756 6.50064 6.57954 7.10758 7.11927 7.52879 8.08000 8.69790 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022835 B = 0.002017 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.867355 B =13875.414496 C =14407.513589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.555 5.555 3 C 0.023 3.977 4 C 0.073 3.927 5 C -0.119 4.119 6 C 0.523 3.477 7 O -0.583 6.583 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.123 4.123 11 C -0.096 4.096 12 H 0.112 0.888 13 C 0.058 3.942 14 N -0.514 5.514 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.611 6.611 18 N -0.573 5.573 19 C -0.331 4.331 20 H 0.081 0.919 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.041 3.959 28 C 0.142 3.858 29 H 0.087 0.913 30 H 0.022 0.978 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.023 0.977 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.102 0.898 48 H 0.395 0.605 49 H 0.278 0.722 50 H 0.046 0.954 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.995 18.451 -10.562 29.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.279 5.279 3 C -0.125 4.125 4 C -0.055 4.055 5 C -0.159 4.159 6 C 0.313 3.687 7 O -0.463 6.463 8 N -0.344 5.344 9 C -0.021 4.021 10 C -0.161 4.161 11 C -0.115 4.115 12 H 0.130 0.870 13 C -0.070 4.070 14 N -0.239 5.239 15 C -0.080 4.080 16 C 0.230 3.770 17 O -0.497 6.497 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.099 0.901 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.088 4.088 28 C 0.038 3.962 29 H 0.105 0.895 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.084 0.916 47 H 0.120 0.880 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.065 0.935 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.848 18.123 -9.612 28.545 hybrid contribution 0.995 -0.233 0.230 1.048 sum -18.853 17.890 -9.381 27.632 Atomic orbital electron populations 1.22554 0.86297 1.03369 1.00937 1.62014 1.09140 1.14512 1.42260 1.22425 1.00971 0.88137 1.01015 1.21725 1.00131 0.92424 0.91241 1.21568 1.03934 0.93979 0.96379 1.20944 0.79024 0.80750 0.87941 1.90715 1.43282 1.69769 1.42502 1.48478 1.55372 1.06426 1.24143 1.22317 0.97509 0.89606 0.92660 1.22588 1.03238 0.96859 0.93368 1.22610 0.97759 0.92265 0.98884 0.87021 1.22727 0.90651 0.95956 0.97673 1.64248 1.00863 1.02369 1.56412 1.21914 0.93049 0.93705 0.99330 1.20555 0.82887 0.89260 0.84341 1.90477 1.48616 1.68068 1.42570 1.41931 1.19332 1.13151 1.46597 1.19710 1.05628 0.89764 1.30960 0.90125 1.26076 0.94900 1.04136 0.96291 1.69688 1.11449 1.39411 1.35667 0.84843 0.78178 0.76886 0.78252 1.19684 1.19483 1.19734 1.23431 0.96376 0.90212 0.98777 1.22195 0.92355 0.89913 0.91766 0.89532 0.95888 0.90178 0.89955 0.91469 0.89823 0.95803 0.95421 0.91615 0.86450 0.86515 0.88580 0.88294 0.86915 0.91403 0.91440 0.94528 0.91620 0.87971 0.77134 0.91295 0.93528 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.32 127.69 1.19 1.35 16 2 N -0.56 -7.62 5.02 -948.83 -4.76 -12.38 16 3 C 0.02 0.27 9.57 127.69 1.22 1.50 16 4 C 0.07 1.23 4.25 86.30 0.37 1.60 16 5 C -0.12 -1.61 4.64 29.85 0.14 -1.47 16 6 C 0.52 11.26 7.62 87.66 0.67 11.93 16 7 O -0.58 -17.88 15.96 -3.05 -0.05 -17.93 16 8 N -0.61 -11.69 2.92 -787.42 -2.30 -13.99 16 9 C 0.10 1.12 6.59 86.69 0.57 1.69 16 10 C -0.12 -1.78 6.48 31.24 0.20 -1.58 16 11 C -0.10 -2.09 3.87 -9.67 -0.04 -2.12 16 12 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 13 C 0.06 1.86 5.03 86.33 0.43 2.29 16 14 N -0.51 -18.17 5.11 -889.37 -4.55 -22.72 16 15 C 0.05 1.94 5.31 85.56 0.45 2.40 16 16 C 0.44 21.66 7.41 87.66 0.65 22.31 16 17 O -0.61 -34.03 14.06 -3.07 -0.04 -34.08 16 18 N -0.57 -30.01 5.29 -306.98 -1.62 -31.63 16 19 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 20 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 21 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 22 N -0.92 -50.20 13.05 21.66 0.28 -49.92 16 23 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 27 C 0.04 1.20 5.61 86.69 0.49 1.69 16 28 C 0.14 3.47 3.89 46.24 0.18 3.65 16 29 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.08 0.60 8.12 -2.39 -0.02 0.58 16 32 H 0.08 0.58 6.47 -2.39 -0.02 0.56 16 33 H 0.07 0.84 8.12 -2.38 -0.02 0.82 16 34 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 35 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.03 0.54 8.08 -2.39 -0.02 0.53 16 37 H 0.07 1.33 8.02 -2.39 -0.02 1.31 16 38 H 0.12 1.02 6.55 -2.39 -0.02 1.00 16 39 H 0.12 1.29 7.85 -2.39 -0.02 1.27 16 40 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 0.73 7.57 -2.39 -0.02 0.71 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.16 7.34 -2.38 -0.02 1.14 16 44 H 0.07 2.62 6.93 -2.39 -0.02 2.61 16 45 H 0.04 1.20 6.82 -2.39 -0.02 1.19 16 46 H 0.07 2.22 7.99 -2.38 -0.02 2.21 16 47 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 48 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 49 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 50 H 0.05 1.34 7.84 -2.39 -0.02 1.32 16 51 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -74.15 401.37 -3.02 -77.17 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.19 Total: 33.53 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 7.81 Total: 26.77 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -12.95 Total: -130.64 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.09 Total: -52.00 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.15 -3.02 -77.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189035383.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.348 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds