Wall clock time and date at job start Tue Mar 31 2020 20:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99798 * 2 1 4 4 H 1.08006 * 119.99348 * 204.58951 * 3 2 1 5 5 C 1.38805 * 120.00049 * 24.59059 * 3 2 1 6 6 N 1.31613 * 120.00460 * 11.01828 * 5 3 2 7 7 Si 1.86807 * 120.00014 * 191.02198 * 5 3 2 8 8 H 1.48487 * 109.47231 * 94.97668 * 7 5 3 9 9 H 1.48499 * 109.46960 * 214.98216 * 7 5 3 10 10 H 1.48504 * 109.46591 * 334.97696 * 7 5 3 11 11 C 1.46504 * 119.99857 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.88294 * 179.30103 * 11 2 1 13 13 C 1.55150 * 111.00353 * 55.41613 * 11 2 1 14 14 C 1.54374 * 102.92089 * 206.45105 * 13 11 2 15 15 N 1.47026 * 107.28632 * 22.14297 * 14 13 11 16 16 C 1.34779 * 125.64528 * 181.05576 * 15 14 13 17 17 O 1.21279 * 119.99345 * 184.77558 * 16 15 14 18 18 C 1.50697 * 120.00091 * 4.77621 * 16 15 14 19 19 N 1.46494 * 109.47283 * 319.42261 * 18 16 15 20 20 C 1.34774 * 119.99923 * 298.09217 * 19 18 16 21 21 N 1.34775 * 120.00125 * 185.55553 * 20 19 18 22 22 O 1.21588 * 120.00167 * 5.54596 * 20 19 18 23 23 C 1.53002 * 109.47020 * 199.41957 * 18 16 15 24 24 C 1.53000 * 109.47096 * 180.02562 * 23 18 16 25 25 C 1.52993 * 109.47291 * 60.00090 * 24 23 18 26 26 C 1.53004 * 109.47331 * 300.00090 * 25 24 23 27 27 C 1.53000 * 109.47006 * 59.99736 * 26 25 24 28 28 C 1.47422 * 108.70301 * 1.08865 * 15 14 13 29 29 H 1.09000 * 109.47112 * 267.65537 * 1 2 3 30 30 H 1.09002 * 109.47249 * 27.65971 * 1 2 3 31 31 H 1.09009 * 109.47074 * 147.65877 * 1 2 3 32 32 H 0.97004 * 120.00656 * 180.02562 * 6 5 3 33 33 H 1.09001 * 110.72641 * 324.78895 * 13 11 2 34 34 H 1.09007 * 110.71566 * 88.06401 * 13 11 2 35 35 H 1.09002 * 109.84760 * 262.73764 * 14 13 11 36 36 H 1.09001 * 109.90116 * 141.58336 * 14 13 11 37 37 H 0.97004 * 120.00020 * 118.09407 * 19 18 16 38 38 H 0.97001 * 120.00117 * 359.97438 * 21 20 19 39 39 H 0.97007 * 120.00422 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47158 * 300.00298 * 23 18 16 41 41 H 1.08998 * 109.47104 * 60.00069 * 23 18 16 42 42 H 1.09001 * 109.47131 * 300.00034 * 24 23 18 43 43 H 1.08998 * 109.47017 * 180.02562 * 24 23 18 44 44 H 1.09003 * 109.47487 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47079 * 59.99912 * 25 24 23 46 46 H 1.09001 * 109.46893 * 299.99936 * 26 25 24 47 47 H 1.08998 * 109.47459 * 180.02562 * 26 25 24 48 48 H 1.08998 * 109.47017 * 180.02562 * 27 26 25 49 49 H 1.09001 * 109.47131 * 60.00345 * 27 26 25 50 50 H 1.08993 * 110.36651 * 217.03417 * 28 15 14 51 51 H 1.09000 * 110.36421 * 94.71034 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1563 1.2283 -0.3892 5 6 1.5500 2.3335 0.5002 6 7 0.4193 2.2475 1.1683 7 14 2.3479 4.0001 0.2252 8 1 1.7550 4.6405 -0.9761 9 1 2.1150 4.8622 1.4117 10 1 3.8081 3.8221 0.0215 11 6 2.1975 -1.2688 0.0006 12 1 3.2737 -1.0961 -0.0119 13 6 1.7636 -2.1620 -1.1915 14 6 2.0553 -3.5884 -0.6782 15 7 2.0780 -3.5280 0.7906 16 6 2.3214 -4.5655 1.6157 17 8 2.2298 -4.4199 2.8162 18 6 2.7074 -5.9064 1.0465 19 7 1.9021 -6.1808 -0.1461 20 6 0.5617 -6.2792 -0.0461 21 7 -0.1694 -6.6416 -1.1188 22 8 0.0118 -6.0411 1.0119 23 6 2.4578 -6.9952 2.0921 24 6 2.8503 -8.3565 1.5144 25 6 4.3328 -8.3422 1.1370 26 6 4.5825 -7.2534 0.0914 27 6 4.1901 -5.8921 0.6691 28 6 1.7897 -2.1448 1.2114 29 1 -0.3633 -0.0420 1.0268 30 1 -0.3634 0.9102 -0.4771 31 1 -0.3634 -0.8683 -0.5498 32 1 0.0000 3.0495 1.5175 33 1 0.7010 -2.0373 -1.4002 34 1 2.3601 -1.9404 -2.0765 35 1 3.0229 -3.9249 -1.0504 36 1 1.2712 -4.2694 -1.0092 37 1 2.3336 -6.2917 -1.0077 38 1 0.2692 -6.8313 -1.9629 39 1 -1.1342 -6.7120 -1.0469 40 1 3.0570 -6.7910 2.9794 41 1 1.4017 -7.0052 2.3613 42 1 2.2514 -8.5610 0.6269 43 1 2.6721 -9.1322 2.2591 44 1 4.6124 -9.3119 0.7250 45 1 4.9317 -8.1378 2.0245 46 1 3.9836 -7.4578 -0.7961 47 1 5.6387 -7.2435 -0.1778 48 1 4.3675 -5.1165 -0.0759 49 1 4.7890 -5.6877 1.5566 50 1 2.3843 -1.8828 2.0865 51 1 0.7273 -2.0267 1.4243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192672732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:49 Heat of formation + Delta-G solvation = -35.166085 kcal Electronic energy + Delta-G solvation = -32261.678973 eV Core-core repulsion = 28196.796028 eV Total energy + Delta-G solvation = -4064.882945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.32881 -39.03115 -38.18596 -37.00251 -34.84804 -34.08129 -33.45597 -31.56171 -31.02090 -29.90780 -29.51978 -27.83602 -26.03043 -24.43967 -22.99412 -22.76846 -22.21403 -21.68801 -19.78136 -19.24124 -19.12804 -18.49124 -17.35694 -17.00966 -16.56038 -15.97279 -15.71084 -15.29370 -15.01951 -14.68898 -14.49353 -14.38090 -13.91745 -13.73010 -13.51886 -13.29774 -13.03904 -12.65514 -12.62770 -12.47768 -12.42861 -12.23974 -12.05191 -11.86774 -11.47577 -11.36282 -10.90205 -10.87399 -10.81511 -10.79496 -10.55882 -10.45928 -10.41307 -10.24518 -10.16328 -9.94786 -9.85621 -9.77313 -9.66211 -8.83013 -8.56203 -8.15794 -6.76884 -5.76884 -3.24414 2.53165 3.04103 3.13376 3.34705 3.38412 3.43851 3.45368 4.28291 4.41384 4.43467 4.46694 4.51119 4.85481 4.92445 5.02429 5.05187 5.16115 5.22196 5.28464 5.31639 5.38802 5.50112 5.50854 5.64251 5.70773 5.75644 5.83492 5.86919 5.88412 5.91842 5.99063 6.06268 6.08470 6.27912 6.33032 6.36947 6.46450 6.52924 6.63365 6.73202 6.76455 6.86604 6.93193 7.36522 7.70174 7.78108 7.78669 7.97051 8.37433 8.50932 8.55998 9.19772 9.81602 10.31860 11.29023 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.003102 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.174581 B = 9025.528331 C = 9438.971831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.584 5.584 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.174 3.826 12 H 0.076 0.924 13 C -0.156 4.156 14 C 0.111 3.889 15 N -0.604 5.604 16 C 0.532 3.468 17 O -0.537 6.537 18 C 0.192 3.808 19 N -0.734 5.734 20 C 0.704 3.296 21 N -0.868 5.868 22 O -0.572 6.572 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.114 4.114 27 C -0.122 4.122 28 C 0.088 3.912 29 H 0.021 0.979 30 H 0.055 0.945 31 H -0.002 1.002 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.397 0.603 38 H 0.395 0.605 39 H 0.415 0.585 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.070 0.930 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -23.397 -8.959 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.304 5.304 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.738 3.262 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.094 0.906 13 C -0.196 4.196 14 C -0.013 4.013 15 N -0.338 5.338 16 C 0.318 3.682 17 O -0.413 6.413 18 C 0.102 3.898 19 N -0.394 5.394 20 C 0.403 3.597 21 N -0.437 5.437 22 O -0.448 6.448 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.152 4.152 27 C -0.160 4.160 28 C -0.036 4.036 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.016 0.984 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.232 0.768 38 H 0.222 0.778 39 H 0.247 0.753 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.106 0.894 50 H 0.088 0.912 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.570 -22.956 -7.167 24.686 hybrid contribution 0.185 0.808 -0.957 1.267 sum 5.755 -22.148 -8.124 24.283 Atomic orbital electron populations 1.20792 0.82471 0.96876 0.98229 1.43842 1.01869 0.99841 1.84844 1.19237 0.99498 0.85538 1.34847 0.91251 1.25105 0.97840 0.98811 0.97609 1.70068 1.19121 1.27652 1.37896 0.86192 0.78856 0.83962 0.77230 1.21481 1.21687 1.20370 1.21449 0.96200 0.85842 0.90205 0.90555 1.23222 1.02743 0.93364 1.00276 1.22106 0.99875 0.98572 0.80767 1.48350 1.69081 1.09637 1.06721 1.20217 0.77073 0.84596 0.86271 1.90683 1.52271 1.83513 1.14810 1.20313 0.91112 0.92822 0.85600 1.45298 1.05107 1.78013 1.10968 1.15934 0.81568 0.77841 0.84381 1.43010 1.11229 1.76810 1.12634 1.91045 1.70607 1.55579 1.27584 1.21775 1.04657 0.92195 0.97006 1.21482 0.95828 0.96971 1.00791 1.21580 0.96834 0.98366 0.99111 1.21502 1.01388 0.93899 0.98362 1.21820 0.92526 0.98646 1.02966 1.23059 1.01251 0.79057 1.00233 0.96034 0.92590 0.98362 0.93573 0.90584 0.90799 0.92494 0.92458 0.76784 0.77802 0.75307 0.90180 0.89246 0.92183 0.91838 0.91997 0.91672 0.91947 0.91218 0.90482 0.89416 0.91197 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 7.85 59.85 0.47 4.45 16 2 N -0.58 -14.47 2.96 -171.02 -0.51 -14.98 16 3 C -0.26 -7.10 9.60 -15.06 -0.14 -7.24 16 4 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 5 C 0.01 0.15 5.09 -17.44 -0.09 0.06 16 6 N -0.90 -26.45 10.74 55.49 0.60 -25.85 16 7 Si 0.91 21.71 29.57 -169.99 -5.03 16.68 16 8 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.17 3.53 3.54 -65.78 -0.23 3.30 16 12 H 0.08 1.55 7.95 -51.93 -0.41 1.13 16 13 C -0.16 -2.50 6.51 -24.87 -0.16 -2.66 16 14 C 0.11 1.50 5.43 -3.04 -0.02 1.48 16 15 N -0.60 -10.49 3.33 -170.49 -0.57 -11.06 16 16 C 0.53 9.41 5.37 -10.99 -0.06 9.36 16 17 O -0.54 -11.84 16.32 5.56 0.09 -11.75 16 18 C 0.19 2.34 0.32 -132.97 -0.04 2.29 16 19 N -0.73 -7.04 1.81 -53.51 -0.10 -7.14 16 20 C 0.70 8.44 6.60 -86.92 -0.57 7.87 16 21 N -0.87 -6.37 8.88 27.63 0.25 -6.13 16 22 O -0.57 -10.16 14.43 5.29 0.08 -10.09 16 23 C -0.12 -1.49 3.95 -26.73 -0.11 -1.60 16 24 C -0.11 -1.01 5.77 -26.73 -0.15 -1.17 16 25 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 26 C -0.11 -0.73 5.75 -26.73 -0.15 -0.88 16 27 C -0.12 -1.11 4.75 -26.73 -0.13 -1.24 16 28 C 0.09 1.85 6.47 -2.53 -0.02 1.83 16 29 H 0.02 0.58 7.60 -51.93 -0.39 0.19 16 30 H 0.06 1.49 6.89 -51.93 -0.36 1.13 16 31 H 0.00 -0.04 6.11 -51.92 -0.32 -0.36 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.31 6.11 -51.93 -0.32 0.99 16 34 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 36 H 0.06 0.71 5.50 -51.93 -0.29 0.43 16 37 H 0.40 2.46 7.33 -40.82 -0.30 2.16 16 38 H 0.39 1.49 8.85 -40.82 -0.36 1.13 16 39 H 0.41 2.90 8.93 -40.82 -0.36 2.54 16 40 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 41 H 0.09 1.44 6.22 -51.93 -0.32 1.11 16 42 H 0.06 0.52 7.61 -51.93 -0.39 0.13 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.32 6.90 -51.93 -0.36 -0.04 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.66 6.80 -51.93 -0.35 0.31 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.07 1.59 8.08 -51.93 -0.42 1.17 16 51 H 0.07 1.53 7.10 -51.93 -0.37 1.16 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -36.15 379.97 -9.20 -45.35 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -8.17 Total: 4.38 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: -1.57 Total: 14.85 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -0.33 Total: -65.16 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.17 Total: -21.83 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.15 -9.20 -45.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192672732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.183 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds