Wall clock time and date at job start Tue Mar 31 2020 20:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99798 * 2 1 4 4 H 1.08006 * 119.99348 * 204.58951 * 3 2 1 5 5 C 1.38805 * 120.00049 * 24.59059 * 3 2 1 6 6 N 1.31613 * 120.00460 * 11.01828 * 5 3 2 7 7 Si 1.86807 * 120.00014 * 191.02198 * 5 3 2 8 8 H 1.48487 * 109.47231 * 94.97668 * 7 5 3 9 9 H 1.48499 * 109.46960 * 214.98216 * 7 5 3 10 10 H 1.48504 * 109.46591 * 334.97696 * 7 5 3 11 11 C 1.46504 * 119.99857 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.88294 * 179.30103 * 11 2 1 13 13 C 1.55150 * 111.00353 * 55.41613 * 11 2 1 14 14 C 1.54374 * 102.92089 * 206.45105 * 13 11 2 15 15 N 1.47026 * 107.28632 * 22.14297 * 14 13 11 16 16 C 1.34779 * 125.64528 * 181.05576 * 15 14 13 17 17 O 1.21279 * 119.99345 * 184.77558 * 16 15 14 18 18 C 1.50697 * 120.00091 * 4.77621 * 16 15 14 19 19 N 1.46494 * 109.47283 * 319.42261 * 18 16 15 20 20 C 1.34774 * 119.99923 * 298.09217 * 19 18 16 21 21 N 1.34775 * 120.00125 * 185.55553 * 20 19 18 22 22 O 1.21588 * 120.00167 * 5.54596 * 20 19 18 23 23 C 1.53002 * 109.47020 * 199.41957 * 18 16 15 24 24 C 1.53000 * 109.47096 * 180.02562 * 23 18 16 25 25 C 1.52993 * 109.47291 * 60.00090 * 24 23 18 26 26 C 1.53004 * 109.47331 * 300.00090 * 25 24 23 27 27 C 1.53000 * 109.47006 * 59.99736 * 26 25 24 28 28 C 1.47422 * 108.70301 * 1.08865 * 15 14 13 29 29 H 1.09000 * 109.47112 * 267.65537 * 1 2 3 30 30 H 1.09002 * 109.47249 * 27.65971 * 1 2 3 31 31 H 1.09009 * 109.47074 * 147.65877 * 1 2 3 32 32 H 0.97004 * 120.00656 * 180.02562 * 6 5 3 33 33 H 1.09001 * 110.72641 * 324.78895 * 13 11 2 34 34 H 1.09007 * 110.71566 * 88.06401 * 13 11 2 35 35 H 1.09002 * 109.84760 * 262.73764 * 14 13 11 36 36 H 1.09001 * 109.90116 * 141.58336 * 14 13 11 37 37 H 0.97004 * 120.00020 * 118.09407 * 19 18 16 38 38 H 0.97001 * 120.00117 * 359.97438 * 21 20 19 39 39 H 0.97007 * 120.00422 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47158 * 300.00298 * 23 18 16 41 41 H 1.08998 * 109.47104 * 60.00069 * 23 18 16 42 42 H 1.09001 * 109.47131 * 300.00034 * 24 23 18 43 43 H 1.08998 * 109.47017 * 180.02562 * 24 23 18 44 44 H 1.09003 * 109.47487 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47079 * 59.99912 * 25 24 23 46 46 H 1.09001 * 109.46893 * 299.99936 * 26 25 24 47 47 H 1.08998 * 109.47459 * 180.02562 * 26 25 24 48 48 H 1.08998 * 109.47017 * 180.02562 * 27 26 25 49 49 H 1.09001 * 109.47131 * 60.00345 * 27 26 25 50 50 H 1.08993 * 110.36651 * 217.03417 * 28 15 14 51 51 H 1.09000 * 110.36421 * 94.71034 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1563 1.2283 -0.3892 5 6 1.5500 2.3335 0.5002 6 7 0.4193 2.2475 1.1683 7 14 2.3479 4.0001 0.2252 8 1 1.7550 4.6405 -0.9761 9 1 2.1150 4.8622 1.4117 10 1 3.8081 3.8221 0.0215 11 6 2.1975 -1.2688 0.0006 12 1 3.2737 -1.0961 -0.0119 13 6 1.7636 -2.1620 -1.1915 14 6 2.0553 -3.5884 -0.6782 15 7 2.0780 -3.5280 0.7906 16 6 2.3214 -4.5655 1.6157 17 8 2.2298 -4.4199 2.8162 18 6 2.7074 -5.9064 1.0465 19 7 1.9021 -6.1808 -0.1461 20 6 0.5617 -6.2792 -0.0461 21 7 -0.1694 -6.6416 -1.1188 22 8 0.0118 -6.0411 1.0119 23 6 2.4578 -6.9952 2.0921 24 6 2.8503 -8.3565 1.5144 25 6 4.3328 -8.3422 1.1370 26 6 4.5825 -7.2534 0.0914 27 6 4.1901 -5.8921 0.6691 28 6 1.7897 -2.1448 1.2114 29 1 -0.3633 -0.0420 1.0268 30 1 -0.3634 0.9102 -0.4771 31 1 -0.3634 -0.8683 -0.5498 32 1 0.0000 3.0495 1.5175 33 1 0.7010 -2.0373 -1.4002 34 1 2.3601 -1.9404 -2.0765 35 1 3.0229 -3.9249 -1.0504 36 1 1.2712 -4.2694 -1.0092 37 1 2.3336 -6.2917 -1.0077 38 1 0.2692 -6.8313 -1.9629 39 1 -1.1342 -6.7120 -1.0469 40 1 3.0570 -6.7910 2.9794 41 1 1.4017 -7.0052 2.3613 42 1 2.2514 -8.5610 0.6269 43 1 2.6721 -9.1322 2.2591 44 1 4.6124 -9.3119 0.7250 45 1 4.9317 -8.1378 2.0245 46 1 3.9836 -7.4578 -0.7961 47 1 5.6387 -7.2435 -0.1778 48 1 4.3675 -5.1165 -0.0759 49 1 4.7890 -5.6877 1.5566 50 1 2.3843 -1.8828 2.0865 51 1 0.7273 -2.0267 1.4243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192672732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:48 Heat of formation + Delta-G solvation = -63.373321 kcal Electronic energy + Delta-G solvation = -32262.902131 eV Core-core repulsion = 28196.796028 eV Total energy + Delta-G solvation = -4066.106102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.39839 -40.30911 -39.33188 -38.35366 -36.62480 -35.11763 -34.29670 -33.34739 -31.84636 -31.28641 -30.55852 -29.43171 -28.10238 -25.84610 -24.34591 -23.73271 -23.41500 -22.58576 -21.01755 -20.69738 -20.19488 -19.35525 -18.96928 -18.36739 -17.60026 -17.54216 -16.96285 -16.48346 -16.27928 -15.97800 -15.57938 -15.38218 -15.18205 -15.01172 -14.77354 -14.65663 -14.43915 -14.24027 -14.14594 -13.62969 -13.45139 -13.28392 -13.23161 -13.11671 -13.08390 -12.80385 -12.52122 -12.40569 -12.22380 -12.10463 -12.06509 -11.87074 -11.74329 -11.51093 -11.45990 -11.35451 -11.15682 -10.85065 -10.65263 -10.61149 -9.90884 -9.65081 -8.80727 -7.87582 -5.38164 1.44242 1.47054 1.47954 1.57753 1.85829 2.04256 2.20329 2.50163 3.26486 3.39540 3.53096 3.58078 3.66039 3.72855 3.89498 3.98101 4.14431 4.17429 4.23123 4.25820 4.28541 4.42034 4.48452 4.51693 4.60046 4.69034 4.75402 4.79490 4.82538 4.98649 5.03766 5.12704 5.14921 5.18897 5.22961 5.22977 5.26995 5.30617 5.38665 5.40087 5.43970 5.55605 5.59954 5.65173 5.92100 6.03813 6.29844 6.59358 7.09517 7.12076 7.14588 7.69244 7.79797 8.26342 9.17479 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.003102 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.174581 B = 9025.528331 C = 9438.971831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.599 5.599 3 C -0.267 4.267 4 H 0.081 0.919 5 C -0.054 4.054 6 N -0.942 5.942 7 Si 0.975 3.025 8 H -0.283 1.283 9 H -0.300 1.300 10 H -0.263 1.263 11 C 0.169 3.831 12 H 0.082 0.918 13 C -0.140 4.140 14 C 0.112 3.888 15 N -0.604 5.604 16 C 0.520 3.480 17 O -0.596 6.596 18 C 0.205 3.795 19 N -0.715 5.715 20 C 0.699 3.301 21 N -0.844 5.844 22 O -0.635 6.635 23 C -0.116 4.116 24 C -0.104 4.104 25 C -0.120 4.120 26 C -0.106 4.106 27 C -0.118 4.118 28 C 0.097 3.903 29 H -0.017 1.017 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.248 0.752 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.420 0.580 38 H 0.417 0.583 39 H 0.419 0.581 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.037 0.963 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.658 -25.776 -13.260 30.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.320 5.320 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.803 3.197 8 H -0.210 1.210 9 H -0.227 1.227 10 H -0.187 1.187 11 C 0.060 3.940 12 H 0.100 0.900 13 C -0.180 4.180 14 C -0.010 4.010 15 N -0.337 5.337 16 C 0.309 3.691 17 O -0.475 6.475 18 C 0.114 3.886 19 N -0.376 5.376 20 C 0.397 3.603 21 N -0.413 5.413 22 O -0.516 6.516 23 C -0.155 4.155 24 C -0.142 4.142 25 C -0.157 4.157 26 C -0.144 4.144 27 C -0.156 4.156 28 C -0.029 4.029 29 H 0.001 0.999 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.260 0.740 38 H 0.248 0.752 39 H 0.252 0.748 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.092 0.908 50 H 0.055 0.945 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.230 -25.406 -11.609 29.120 hybrid contribution -0.675 1.480 0.445 1.686 sum 7.555 -23.926 -11.165 27.462 Atomic orbital electron populations 1.20446 0.83061 0.96858 0.96047 1.44039 1.01846 1.01038 1.85074 1.19668 0.99849 0.86465 1.33746 0.90171 1.25952 0.98573 1.02524 0.97860 1.70262 1.20864 1.28075 1.39591 0.85124 0.78686 0.79297 0.76563 1.20967 1.22720 1.18704 1.21625 0.96056 0.84573 0.91715 0.90025 1.23096 1.02451 0.93226 0.99185 1.22389 1.03098 0.97589 0.77939 1.48436 1.68682 1.07940 1.08627 1.21451 0.75656 0.86292 0.85742 1.90644 1.54605 1.84655 1.17638 1.20122 0.93477 0.88773 0.86252 1.44987 1.04250 1.77168 1.11213 1.16218 0.82192 0.77585 0.84327 1.42770 1.11274 1.74960 1.12340 1.91038 1.71899 1.58227 1.30420 1.21700 1.01718 0.94990 0.97056 1.21437 0.97758 0.94082 1.00874 1.21593 0.94672 1.00049 0.99415 1.21529 1.03197 0.91147 0.98477 1.21886 0.89233 1.01415 1.03102 1.22646 0.98301 0.82204 0.99758 0.99854 0.94908 0.95412 0.94256 0.91773 0.87604 0.87784 0.90679 0.73959 0.75156 0.74845 0.92234 0.93359 0.91185 0.91895 0.89643 0.92406 0.89507 0.88977 0.88871 0.90760 0.94458 0.95340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.31 7.85 127.77 1.00 10.31 16 2 N -0.60 -30.16 2.96 -695.00 -2.05 -32.22 16 3 C -0.27 -14.57 9.60 84.03 0.81 -13.76 16 4 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 5 C -0.05 -3.05 5.09 84.86 0.43 -2.62 16 6 N -0.94 -57.43 10.74 21.65 0.23 -57.20 16 7 Si 0.98 45.13 29.57 68.60 2.03 47.16 16 8 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 9 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 11 C 0.17 6.82 3.54 46.38 0.16 6.99 16 12 H 0.08 3.20 7.95 -2.39 -0.02 3.18 16 13 C -0.14 -4.06 6.51 31.80 0.21 -3.86 16 14 C 0.11 2.64 5.43 86.75 0.47 3.11 16 15 N -0.60 -20.93 3.33 -811.69 -2.70 -23.63 16 16 C 0.52 18.87 5.37 87.66 0.47 19.34 16 17 O -0.60 -28.33 16.32 -3.03 -0.05 -28.38 16 18 C 0.20 4.75 0.32 2.86 0.00 4.75 16 19 N -0.71 -11.49 1.81 -441.46 -0.80 -12.29 16 20 C 0.70 15.48 6.60 179.06 1.18 16.67 16 21 N -0.84 -9.74 8.88 -184.75 -1.64 -11.38 16 22 O -0.64 -23.09 14.43 -3.99 -0.06 -23.14 16 23 C -0.12 -3.00 3.95 30.59 0.12 -2.88 16 24 C -0.10 -1.66 5.77 30.59 0.18 -1.49 16 25 C -0.12 -1.25 5.92 30.59 0.18 -1.07 16 26 C -0.11 -0.81 5.75 30.60 0.18 -0.63 16 27 C -0.12 -1.78 4.75 30.60 0.15 -1.63 16 28 C 0.10 4.26 6.47 86.86 0.56 4.82 16 29 H -0.02 -0.99 7.60 -2.39 -0.02 -1.01 16 30 H 0.03 1.80 6.89 -2.39 -0.02 1.78 16 31 H 0.03 1.23 6.11 -2.38 -0.01 1.22 16 32 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.06 2.04 6.11 -2.39 -0.01 2.03 16 34 H 0.11 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.10 1.58 6.80 -2.39 -0.02 1.56 16 36 H 0.08 1.56 5.50 -2.39 -0.01 1.55 16 37 H 0.42 2.80 7.33 -92.71 -0.68 2.12 16 38 H 0.42 1.15 8.85 -92.71 -0.82 0.33 16 39 H 0.42 4.87 8.93 -92.70 -0.83 4.04 16 40 H 0.06 1.73 7.90 -2.39 -0.02 1.72 16 41 H 0.05 1.66 6.22 -2.39 -0.01 1.65 16 42 H 0.07 0.99 7.61 -2.39 -0.02 0.97 16 43 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.09 0.29 6.90 -2.39 -0.02 0.27 16 47 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.09 1.12 6.80 -2.39 -0.02 1.10 16 49 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.04 1.83 8.08 -2.39 -0.02 1.81 16 51 H 0.03 1.44 7.10 -2.39 -0.02 1.42 16 Total: -1.00 -88.73 379.97 -0.29 -89.02 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -1.35 Total: 14.00 kcal Atomic # 6 Polarization: 31.95 SS G_CDS: 6.10 Total: 38.05 kcal Atomic # 7 Polarization: -129.75 SS G_CDS: -6.96 Total: -136.71 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.11 Total: -51.53 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -88.73 -0.29 -89.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192672732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.651 kcal (2) G-P(sol) polarization free energy of solvation -88.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds