Wall clock time and date at job start Tue Mar 31 2020 20:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99779 * 2 1 4 4 C 1.50693 * 109.47433 * 293.95064 * 3 2 1 5 5 O 1.21296 * 120.00191 * 0.02562 * 4 3 2 6 6 N 1.34783 * 120.00225 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99951 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99862 * 0.02562 * 7 6 4 9 9 C 1.38947 * 119.99727 * 180.02562 * 7 6 4 10 10 N 1.31414 * 120.00020 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99996 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47124 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46931 * 120.00125 * 11 9 7 14 14 H 1.48497 * 109.47392 * 240.00286 * 11 9 7 15 15 C 1.46898 * 111.00027 * 123.95337 * 2 1 3 16 16 H 1.08996 * 110.88554 * 296.21705 * 15 2 1 17 17 C 1.55160 * 110.99969 * 60.09361 * 15 2 1 18 18 C 1.54325 * 102.94166 * 153.57416 * 17 15 2 19 19 N 1.47028 * 107.27197 * 337.80940 * 18 17 15 20 20 C 1.34774 * 125.64921 * 178.99285 * 19 18 17 21 21 O 1.21282 * 119.99604 * 179.97438 * 20 19 18 22 22 C 1.50701 * 120.00088 * 359.97438 * 20 19 18 23 23 N 1.46900 * 109.47136 * 179.97438 * 22 20 19 24 24 C 1.48539 * 110.99694 * 52.60276 * 23 22 20 25 25 C 1.54935 * 103.22410 * 159.72135 * 24 23 22 26 26 C 1.54595 * 102.92237 * 322.58343 * 25 24 23 27 27 C 1.47898 * 110.99928 * 169.99708 * 23 22 20 28 28 C 1.47469 * 108.71777 * 358.97156 * 19 18 17 29 29 H 1.09006 * 109.47067 * 54.89455 * 1 2 3 30 30 H 1.09009 * 109.46721 * 294.89734 * 1 2 3 31 31 H 1.08996 * 109.47287 * 174.89576 * 1 2 3 32 32 H 1.09004 * 109.47514 * 53.95717 * 3 2 1 33 33 H 1.09004 * 109.46694 * 173.95105 * 3 2 1 34 34 H 0.96999 * 119.99394 * 0.02562 * 6 4 3 35 35 H 0.97006 * 119.99810 * 180.02562 * 10 9 7 36 36 H 1.09006 * 110.72247 * 271.93408 * 17 15 2 37 37 H 1.09004 * 110.72279 * 35.21353 * 17 15 2 38 38 H 1.09007 * 109.88427 * 97.21917 * 18 17 15 39 39 H 1.08991 * 109.88540 * 218.38998 * 18 17 15 40 40 H 1.09000 * 109.46619 * 299.99592 * 22 20 19 41 41 H 1.09003 * 109.47060 * 59.99596 * 22 20 19 42 42 H 1.09005 * 110.66254 * 278.15312 * 24 23 22 43 43 H 1.09000 * 110.66849 * 41.28328 * 24 23 22 44 44 H 1.09003 * 110.72451 * 204.22402 * 25 24 23 45 45 H 1.09006 * 110.72239 * 80.94288 * 25 24 23 46 46 H 1.08998 * 110.31046 * 263.04121 * 26 25 24 47 47 H 1.09000 * 110.30658 * 140.87269 * 26 25 24 48 48 H 1.09002 * 109.91646 * 333.50974 * 27 23 22 49 49 H 1.08994 * 109.91458 * 94.80533 * 27 23 22 50 50 H 1.09001 * 110.34742 * 265.25270 * 28 19 18 51 51 H 1.09001 * 110.40144 * 142.91882 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0048 1.4456 -2.1408 6 7 2.0181 3.3203 -1.5232 7 6 1.6915 3.9352 -2.7043 8 1 1.1285 3.3995 -3.4544 9 6 2.0848 5.2475 -2.9363 10 7 2.7703 5.8990 -2.0238 11 14 1.6393 6.0855 -4.5452 12 1 0.8703 5.1436 -5.3976 13 1 0.8124 7.2868 -4.2651 14 1 2.8804 6.4926 -5.2516 15 6 1.9955 -0.7660 1.1376 16 1 1.7147 -0.3008 2.0825 17 6 1.5205 -2.2420 1.0816 18 6 2.6317 -2.9919 1.8461 19 7 3.8354 -2.1486 1.8049 20 6 5.0200 -2.4420 2.3769 21 8 5.9491 -1.6689 2.2779 22 6 5.1899 -3.7307 3.1394 23 7 6.5608 -3.8141 3.6608 24 6 6.9135 -2.5923 4.4283 25 6 8.1030 -3.0562 5.3060 26 6 7.7086 -4.5017 5.6867 27 6 6.6995 -4.9403 4.6094 28 6 3.5324 -0.9287 1.0337 29 1 -0.3633 0.5910 -0.8408 30 1 -0.3633 0.4327 0.9323 31 1 -0.3633 -1.0235 -0.0914 32 1 1.5611 1.9274 0.8310 33 1 3.0798 1.3444 0.1083 34 1 2.5234 3.8014 -0.8494 35 1 3.0445 6.8153 -2.1856 36 1 0.5606 -2.3577 1.5849 37 1 1.4606 -2.5890 0.0500 38 1 2.3268 -3.1523 2.8803 39 1 2.8326 -3.9486 1.3641 40 1 4.4831 -3.7580 3.9687 41 1 5.0025 -4.5738 2.4744 42 1 7.2208 -1.7911 3.7561 43 1 6.0771 -2.2741 5.0507 44 1 8.1915 -2.4334 6.1962 45 1 9.0309 -3.0474 4.7340 46 1 7.2422 -4.5197 6.6717 47 1 8.5850 -5.1497 5.6703 48 1 5.7360 -5.1586 5.0700 49 1 7.0728 -5.8214 4.0876 50 1 3.8312 -1.0543 -0.0070 51 1 4.0357 -0.0671 1.4724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194028433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:31 Heat of formation + Delta-G solvation = -39.394394 kcal Electronic energy + Delta-G solvation = -29655.012231 eV Core-core repulsion = 25589.945933 eV Total energy + Delta-G solvation = -4065.066298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55393 -39.25807 -38.36959 -37.45156 -35.48005 -33.82698 -32.69910 -31.28413 -30.99124 -29.31429 -29.08256 -27.86491 -26.79407 -24.91595 -23.78734 -22.92560 -21.57510 -21.14240 -20.28986 -19.48972 -19.04604 -17.84098 -17.41342 -16.94625 -16.29927 -16.17057 -15.75936 -15.60519 -14.83904 -14.63877 -14.60757 -14.49582 -14.18821 -13.83339 -13.68714 -13.55723 -13.38149 -13.08054 -12.88364 -12.78324 -12.48889 -12.42830 -12.13618 -11.88826 -11.83319 -11.62297 -11.52703 -11.40676 -11.28623 -11.20014 -11.08388 -10.98302 -10.89129 -10.78407 -10.33383 -10.21558 -9.77286 -9.47934 -8.83629 -8.70434 -8.48238 -7.99451 -7.90237 -6.40720 -3.81568 2.45504 2.62397 3.17134 3.27774 3.34731 3.69372 3.88877 3.92557 4.09955 4.22822 4.34727 4.41660 4.47383 4.61533 4.65014 4.76236 4.89624 4.98523 5.00380 5.05150 5.12509 5.17145 5.22362 5.27012 5.31260 5.34805 5.48485 5.54835 5.57310 5.62449 5.68254 5.71564 5.76393 5.86023 5.87792 5.88369 5.90787 5.98414 6.04235 6.15582 6.28095 6.50048 6.56167 6.59083 7.17453 7.29231 7.36025 7.56384 8.02396 8.07213 8.62317 9.18951 9.55203 10.06598 10.77016 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.002060 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.488981 B =13586.309121 C =14841.144578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.507 5.507 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.069 3.931 16 H 0.054 0.946 17 C -0.123 4.123 18 C 0.102 3.898 19 N -0.619 5.619 20 C 0.528 3.472 21 O -0.522 6.522 22 C 0.034 3.966 23 N -0.503 5.503 24 C 0.030 3.970 25 C -0.126 4.126 26 C -0.132 4.132 27 C 0.034 3.966 28 C 0.114 3.886 29 H 0.098 0.902 30 H 0.014 0.986 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.392 0.608 35 H 0.271 0.729 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.044 0.956 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -20.828 17.439 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.542 5.542 11 Si 0.757 3.243 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.207 1.207 15 C -0.041 4.041 16 H 0.072 0.928 17 C -0.161 4.161 18 C -0.022 4.022 19 N -0.355 5.355 20 C 0.316 3.684 21 O -0.398 6.398 22 C -0.098 4.098 23 N -0.228 5.228 24 C -0.097 4.097 25 C -0.164 4.164 26 C -0.170 4.170 27 C -0.093 4.093 28 C -0.008 4.008 29 H 0.116 0.884 30 H 0.033 0.967 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.225 0.775 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.970 -20.940 15.956 26.624 hybrid contribution -0.846 1.217 1.137 1.868 sum 3.124 -19.723 17.093 26.286 Atomic orbital electron populations 1.22538 0.86179 1.02288 1.01416 1.61607 1.08888 1.12904 1.39680 1.21925 1.00847 0.88766 0.97379 1.19669 0.85534 0.82943 0.88861 1.90485 1.43975 1.64648 1.47085 1.41877 1.49333 1.10734 1.18077 1.19744 1.32851 0.95416 0.94749 0.87823 1.25273 0.96823 0.96696 0.99233 1.69626 1.37997 1.12205 1.34396 0.85800 0.78210 0.78993 0.81334 1.19218 1.20814 1.20740 1.22781 0.94004 0.94313 0.93002 0.92808 1.22701 0.97282 0.93976 1.02117 1.22081 0.84959 0.94627 1.00505 1.48442 1.11122 1.22056 1.53832 1.20100 0.80983 0.87947 0.79373 1.90673 1.38590 1.50723 1.59780 1.22181 0.91427 0.96723 0.99431 1.64691 1.21052 1.03769 1.33243 1.23545 0.96465 0.94133 0.95529 1.22533 0.99135 0.95395 0.99383 1.22402 0.99166 0.97398 0.98006 1.22936 0.98515 0.95003 0.92889 1.22266 0.94453 0.87089 0.97029 0.88358 0.96733 0.91926 0.93346 0.89301 0.77485 0.91917 0.90037 0.88921 0.91529 0.90998 0.91910 0.87733 0.86865 0.94543 0.91127 0.90608 0.91594 0.90932 0.93773 0.90098 0.89775 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 8.97 60.07 0.54 0.89 16 2 N -0.51 -7.97 4.40 -233.74 -1.03 -9.00 16 3 C 0.04 0.74 5.34 -4.98 -0.03 0.72 16 4 C 0.44 10.37 7.46 -10.99 -0.08 10.29 16 5 O -0.58 -15.24 13.92 5.54 0.08 -15.17 16 6 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 11 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 15 C 0.07 0.83 2.71 -65.57 -0.18 0.65 16 16 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 17 C -0.12 -1.12 5.29 -24.89 -0.13 -1.25 16 18 C 0.10 0.80 6.49 -3.06 -0.02 0.78 16 19 N -0.62 -6.94 3.33 -170.48 -0.57 -7.51 16 20 C 0.53 6.51 7.56 -10.99 -0.08 6.43 16 21 O -0.52 -8.39 13.77 5.56 0.08 -8.31 16 22 C 0.03 0.30 4.71 -4.98 -0.02 0.28 16 23 N -0.50 -5.12 5.26 -231.89 -1.22 -6.34 16 24 C 0.03 0.32 5.30 -1.90 -0.01 0.31 16 25 C -0.13 -1.03 7.06 -24.87 -0.18 -1.21 16 26 C -0.13 -0.88 6.93 -25.37 -0.18 -1.06 16 27 C 0.03 0.25 6.70 -2.76 -0.02 0.24 16 28 C 0.11 1.49 5.43 -2.51 -0.01 1.48 16 29 H 0.10 1.85 5.81 -51.93 -0.30 1.55 16 30 H 0.01 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.06 0.79 7.19 -51.93 -0.37 0.42 16 32 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.09 1.47 6.77 -51.93 -0.35 1.12 16 34 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 35 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.46 7.81 -51.93 -0.41 0.05 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.11 1.51 5.97 -51.93 -0.31 1.20 16 43 H 0.04 0.37 8.02 -51.93 -0.42 -0.04 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.04 0.28 7.57 -51.93 -0.39 -0.12 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 51 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 LS Contribution 399.12 15.07 6.01 6.01 Total: -1.00 -32.98 399.12 -10.34 -43.32 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.70 Total: 8.58 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.64 Total: 10.59 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -2.15 Total: -61.13 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.15 Total: -23.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.98 -10.34 -43.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194028433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.928 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds