Wall clock time and date at job start Tue Mar 31 2020 20:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99779 * 2 1 4 4 C 1.50693 * 109.47433 * 293.95064 * 3 2 1 5 5 O 1.21296 * 120.00191 * 0.02562 * 4 3 2 6 6 N 1.34783 * 120.00225 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99951 * 180.02562 * 6 4 3 8 8 H 1.08004 * 119.99862 * 0.02562 * 7 6 4 9 9 C 1.38947 * 119.99727 * 180.02562 * 7 6 4 10 10 N 1.31414 * 120.00020 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99996 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47124 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46931 * 120.00125 * 11 9 7 14 14 H 1.48497 * 109.47392 * 240.00286 * 11 9 7 15 15 C 1.46898 * 111.00027 * 123.95337 * 2 1 3 16 16 H 1.08996 * 110.88554 * 296.21705 * 15 2 1 17 17 C 1.55160 * 110.99969 * 60.09361 * 15 2 1 18 18 C 1.54325 * 102.94166 * 153.57416 * 17 15 2 19 19 N 1.47028 * 107.27197 * 337.80940 * 18 17 15 20 20 C 1.34774 * 125.64921 * 178.99285 * 19 18 17 21 21 O 1.21282 * 119.99604 * 179.97438 * 20 19 18 22 22 C 1.50701 * 120.00088 * 359.97438 * 20 19 18 23 23 N 1.46900 * 109.47136 * 179.97438 * 22 20 19 24 24 C 1.48539 * 110.99694 * 52.60276 * 23 22 20 25 25 C 1.54935 * 103.22410 * 159.72135 * 24 23 22 26 26 C 1.54595 * 102.92237 * 322.58343 * 25 24 23 27 27 C 1.47898 * 110.99928 * 169.99708 * 23 22 20 28 28 C 1.47469 * 108.71777 * 358.97156 * 19 18 17 29 29 H 1.09006 * 109.47067 * 54.89455 * 1 2 3 30 30 H 1.09009 * 109.46721 * 294.89734 * 1 2 3 31 31 H 1.08996 * 109.47287 * 174.89576 * 1 2 3 32 32 H 1.09004 * 109.47514 * 53.95717 * 3 2 1 33 33 H 1.09004 * 109.46694 * 173.95105 * 3 2 1 34 34 H 0.96999 * 119.99394 * 0.02562 * 6 4 3 35 35 H 0.97006 * 119.99810 * 180.02562 * 10 9 7 36 36 H 1.09006 * 110.72247 * 271.93408 * 17 15 2 37 37 H 1.09004 * 110.72279 * 35.21353 * 17 15 2 38 38 H 1.09007 * 109.88427 * 97.21917 * 18 17 15 39 39 H 1.08991 * 109.88540 * 218.38998 * 18 17 15 40 40 H 1.09000 * 109.46619 * 299.99592 * 22 20 19 41 41 H 1.09003 * 109.47060 * 59.99596 * 22 20 19 42 42 H 1.09005 * 110.66254 * 278.15312 * 24 23 22 43 43 H 1.09000 * 110.66849 * 41.28328 * 24 23 22 44 44 H 1.09003 * 110.72451 * 204.22402 * 25 24 23 45 45 H 1.09006 * 110.72239 * 80.94288 * 25 24 23 46 46 H 1.08998 * 110.31046 * 263.04121 * 26 25 24 47 47 H 1.09000 * 110.30658 * 140.87269 * 26 25 24 48 48 H 1.09002 * 109.91646 * 333.50974 * 27 23 22 49 49 H 1.08994 * 109.91458 * 94.80533 * 27 23 22 50 50 H 1.09001 * 110.34742 * 265.25270 * 28 19 18 51 51 H 1.09001 * 110.40144 * 142.91882 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6370 2.0472 -1.2984 5 8 1.0048 1.4456 -2.1408 6 7 2.0181 3.3203 -1.5232 7 6 1.6915 3.9352 -2.7043 8 1 1.1285 3.3995 -3.4544 9 6 2.0848 5.2475 -2.9363 10 7 2.7703 5.8990 -2.0238 11 14 1.6393 6.0855 -4.5452 12 1 0.8703 5.1436 -5.3976 13 1 0.8124 7.2868 -4.2651 14 1 2.8804 6.4926 -5.2516 15 6 1.9955 -0.7660 1.1376 16 1 1.7147 -0.3008 2.0825 17 6 1.5205 -2.2420 1.0816 18 6 2.6317 -2.9919 1.8461 19 7 3.8354 -2.1486 1.8049 20 6 5.0200 -2.4420 2.3769 21 8 5.9491 -1.6689 2.2779 22 6 5.1899 -3.7307 3.1394 23 7 6.5608 -3.8141 3.6608 24 6 6.9135 -2.5923 4.4283 25 6 8.1030 -3.0562 5.3060 26 6 7.7086 -4.5017 5.6867 27 6 6.6995 -4.9403 4.6094 28 6 3.5324 -0.9287 1.0337 29 1 -0.3633 0.5910 -0.8408 30 1 -0.3633 0.4327 0.9323 31 1 -0.3633 -1.0235 -0.0914 32 1 1.5611 1.9274 0.8310 33 1 3.0798 1.3444 0.1083 34 1 2.5234 3.8014 -0.8494 35 1 3.0445 6.8153 -2.1856 36 1 0.5606 -2.3577 1.5849 37 1 1.4606 -2.5890 0.0500 38 1 2.3268 -3.1523 2.8803 39 1 2.8326 -3.9486 1.3641 40 1 4.4831 -3.7580 3.9687 41 1 5.0025 -4.5738 2.4744 42 1 7.2208 -1.7911 3.7561 43 1 6.0771 -2.2741 5.0507 44 1 8.1915 -2.4334 6.1962 45 1 9.0309 -3.0474 4.7340 46 1 7.2422 -4.5197 6.6717 47 1 8.5850 -5.1497 5.6703 48 1 5.7360 -5.1586 5.0700 49 1 7.0728 -5.8214 4.0876 50 1 3.8312 -1.0543 -0.0070 51 1 4.0357 -0.0671 1.4724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194028433.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:30 Heat of formation + Delta-G solvation = -65.085119 kcal Electronic energy + Delta-G solvation = -29656.126264 eV Core-core repulsion = 25589.945933 eV Total energy + Delta-G solvation = -4066.180332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.45266 -40.48471 -39.62724 -38.55117 -36.73832 -35.78803 -33.41587 -33.28916 -31.95634 -30.23586 -29.72759 -29.31290 -27.59758 -26.70972 -24.97899 -23.90699 -22.30502 -21.70635 -21.41358 -20.91334 -20.22989 -19.83934 -18.31969 -17.94912 -17.58454 -17.03001 -16.76680 -16.57134 -16.54120 -16.07934 -15.85636 -15.50245 -15.43610 -15.10952 -14.84726 -14.62625 -14.40972 -14.13214 -13.90412 -13.70676 -13.62753 -13.45014 -13.22789 -13.11216 -13.09250 -12.81311 -12.59250 -12.52190 -12.42660 -12.34220 -12.20858 -12.12049 -11.90743 -11.87472 -11.83870 -11.46746 -11.45819 -10.71023 -10.29313 -10.00903 -9.71611 -9.39694 -9.26838 -8.47120 -5.95895 1.35835 1.40839 1.55285 1.55578 1.76247 2.03945 2.27725 2.74197 3.04506 3.19272 3.26789 3.39762 3.64398 3.69448 3.75750 3.95039 4.02515 4.09321 4.16694 4.24584 4.27759 4.31318 4.33261 4.37904 4.39914 4.47763 4.57451 4.61147 4.64850 4.73407 4.74288 4.78407 4.88411 4.94286 4.99209 4.99771 5.09724 5.16212 5.17485 5.26234 5.29598 5.32568 5.40898 5.83458 5.86550 5.96676 6.03693 6.18730 6.49144 6.59382 7.12234 7.12621 7.55401 8.10684 8.70622 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.002060 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.488981 B =13586.309121 C =14841.144578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.524 5.524 3 C 0.055 3.945 4 C 0.443 3.557 5 O -0.610 6.610 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.922 5.922 11 Si 0.994 3.006 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.073 3.927 16 H 0.067 0.933 17 C -0.115 4.115 18 C 0.101 3.899 19 N -0.618 5.618 20 C 0.519 3.481 21 O -0.571 6.571 22 C 0.041 3.959 23 N -0.527 5.527 24 C 0.032 3.968 25 C -0.126 4.126 26 C -0.127 4.127 27 C 0.034 3.966 28 C 0.115 3.885 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.394 0.606 35 H 0.277 0.723 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.087 0.913 50 H 0.058 0.942 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 -23.061 19.343 30.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C -0.076 4.076 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.196 1.196 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.036 4.036 16 H 0.085 0.915 17 C -0.153 4.153 18 C -0.021 4.021 19 N -0.352 5.352 20 C 0.309 3.691 21 O -0.450 6.450 22 C -0.089 4.089 23 N -0.253 5.253 24 C -0.095 4.095 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.093 4.093 28 C -0.009 4.009 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.228 0.772 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.077 0.923 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.006 -23.209 17.888 29.456 hybrid contribution -0.552 1.858 0.543 2.013 sum 2.455 -21.351 18.431 28.313 Atomic orbital electron populations 1.22429 0.85680 1.03315 1.00427 1.61539 1.09470 1.11687 1.42221 1.21739 1.01517 0.90015 0.94319 1.20664 0.83765 0.82187 0.90310 1.90461 1.45019 1.65252 1.48870 1.41966 1.50060 1.11631 1.17695 1.19707 1.34239 0.96348 0.95651 0.90095 1.26078 0.96312 0.96725 1.02463 1.69693 1.38218 1.12653 1.35794 0.84848 0.78199 0.77901 0.77252 1.19612 1.19548 1.19809 1.22802 0.92953 0.95885 0.91952 0.91503 1.22726 0.99057 0.91284 1.02255 1.22344 0.82829 0.94458 1.02451 1.48537 1.12079 1.21735 1.52894 1.20861 0.80477 0.88681 0.79115 1.90670 1.40296 1.52455 1.61602 1.22224 0.91611 0.95030 1.00077 1.64642 1.22059 1.04218 1.34356 1.23357 0.97310 0.93750 0.95079 1.22521 0.97760 0.96924 0.99200 1.22414 0.99558 0.96026 0.98527 1.23013 0.99635 0.94033 0.92629 1.22066 0.95317 0.87728 0.95775 0.92626 0.94931 0.89228 0.91446 0.88511 0.77217 0.91368 0.87248 0.89992 0.88432 0.88875 0.89269 0.85651 0.90567 0.94555 0.90147 0.91645 0.90143 0.90060 0.91976 0.89464 0.92337 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 8.97 127.69 1.15 1.98 16 2 N -0.52 -16.17 4.40 -893.42 -3.93 -20.10 16 3 C 0.06 1.97 5.34 85.55 0.46 2.43 16 4 C 0.44 21.38 7.46 87.65 0.65 22.04 16 5 O -0.61 -33.47 13.92 -3.08 -0.04 -33.51 16 6 N -0.58 -30.26 5.29 -306.98 -1.62 -31.88 16 7 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 9 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 10 N -0.92 -50.96 13.05 21.66 0.28 -50.68 16 11 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 15 C 0.07 1.64 2.71 46.31 0.13 1.77 16 16 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 17 C -0.12 -1.72 5.29 31.78 0.17 -1.55 16 18 C 0.10 1.20 6.49 86.73 0.56 1.76 16 19 N -0.62 -12.96 3.33 -811.67 -2.70 -15.66 16 20 C 0.52 12.45 7.56 87.66 0.66 13.11 16 21 O -0.57 -19.17 13.77 -3.04 -0.04 -19.21 16 22 C 0.04 0.64 4.71 85.56 0.40 1.04 16 23 N -0.53 -9.99 5.26 -887.55 -4.67 -14.66 16 24 C 0.03 0.68 5.30 86.65 0.46 1.14 16 25 C -0.13 -1.98 7.06 31.80 0.22 -1.75 16 26 C -0.13 -1.41 6.93 31.47 0.22 -1.19 16 27 C 0.03 0.41 6.70 86.45 0.58 0.99 16 28 C 0.11 3.00 5.43 86.84 0.47 3.48 16 29 H 0.05 2.12 5.81 -2.38 -0.01 2.11 16 30 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.09 2.07 7.19 -2.39 -0.02 2.05 16 32 H 0.07 2.15 8.12 -2.38 -0.02 2.13 16 33 H 0.10 3.29 6.77 -2.38 -0.02 3.28 16 34 H 0.39 19.92 7.90 -92.71 -0.73 19.19 16 35 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 36 H 0.11 1.08 8.11 -2.38 -0.02 1.06 16 37 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 38 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.93 7.81 -2.39 -0.02 0.91 16 41 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 2.18 5.97 -2.38 -0.01 2.17 16 43 H 0.04 0.73 8.02 -2.39 -0.02 0.71 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.53 7.57 -2.39 -0.02 0.51 16 49 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.06 1.76 7.69 -2.39 -0.02 1.74 16 Total: -1.00 -76.05 399.12 -3.10 -79.15 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.19 Total: 34.19 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 7.41 Total: 26.63 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -12.64 Total: -132.98 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.08 Total: -52.72 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -76.05 -3.10 -79.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194028433.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.061 kcal (2) G-P(sol) polarization free energy of solvation -76.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds